Basic Information

Insect: Cnaphalocrocis medinalis
Gene Symbol: -
Assembly: GCA_014851415.1
Location: Chr14:10806093-10813523[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0029 0.19 12.1 2.0 3 23 726 747 724 747 0.95

2 9 0.0075 0.49 10.8 2.2 5 23 765 782 761 782 0.91

3 9 0.0012 0.08 13.3 0.1 1 23 789 811 789 811 0.99

4 9 3.5e-05 0.0023 18.1 1.3 2 23 830 851 829 851 0.97

5 9 0.0054 0.36 11.2 0.1 1 23 864 886 864 886 0.96

6 9 3.3e-06 0.00022 21.3 6.4 1 23 892 914 892 914 0.98

7 9 0.00011 0.0072 16.5 1.2 1 23 920 942 920 942 0.99

8 9 0.15 9.7 6.7 1.5 1 21 947 967 947 968 0.96

9 9 0.001 0.068 13.5 0.6 2 22 993 1013 992 1013 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0029	0.19	12.1	2.0	3	23	726	747	724	747	0.95
2	9	0.0075	0.49	10.8	2.2	5	23	765	782	761	782	0.91
3	9	0.0012	0.08	13.3	0.1	1	23	789	811	789	811	0.99
4	9	3.5e-05	0.0023	18.1	1.3	2	23	830	851	829	851	0.97
5	9	0.0054	0.36	11.2	0.1	1	23	864	886	864	886	0.96
6	9	3.3e-06	0.00022	21.3	6.4	1	23	892	914	892	914	0.98
7	9	0.00011	0.0072	16.5	1.2	1	23	920	942	920	942	0.99
8	9	0.15	9.7	6.7	1.5	1	21	947	967	947	968	0.96
9	9	0.001	0.068	13.5	0.6	2	22	993	1013	992	1013	0.94

Sequence Information

Coding Sequence: ATGAGTTTCATGAAGGCAAGTCAAGACGAGTTATTAGACGGTTTTTGCAGAGGTTGTCTTAAGAAATACTACGACCCAGCAGAGTTATTGCACTATACAGAAAAGAATAGAAGATTATTTGTATATTCCACCGGTATTCAGGTGAAGCGCAATGACACATTGACATTCCAATTATGTAAAGACTGCTCCACAAACATGAAGATTTCCTGCAAGTTCAAAAAGCAATGCAGGTCATCGGAAAGACGGTTCAAGAGCTACCTGAGACTGAAAGAGCTTGGAGATAATATTGATCTCCTCACATTCCTGAGAAATAGTGATGATAATTTTAAGTTCCCATTATTAAGTGGTAATAGTACACCAGCAACGCAAAAGAACAGAGATGATGATAATGAATCAACATGCGCCAGTATGCGTAACTTCATATCGGACATCCTTCAGGGTGAGGAGATGCCCGACACAGAAGCTAGAATCATCAAGGAAGTGATCGAGGAAGAGGCAGATCTACTGGAGGATTCCCTGGACTCCCATTGGCTGCAAGATGATGCTTCCATGGATAATGATTATAGATTAGACTTTAGTTTTAGCCCATTTACAACGCCTCGTTCTGTGAACAACAATCTGTTTAACACACCAATCAAACAATTTGAGCCAAATCTGAATTATAAAAATAATCATGCCAAGAAAGTATTTCAACAACTTCCTACATCGCAATGCAGCGTTGACGATAATGTTGCTAAAATTATTCAATCAAAGAAATCAGAACAAAATTGCGACACTAAGCAAAAGGCTCGAATTGATCCAAATATTTTAATCAAAGAAGTCAAAAACGACGATTTAGCTATATTTTCAATGGACGACAGTATTACTGAATTGTTGAATAAGAATGAAGATTTATTTCCTTTACCAGATCAGAATGAAATTGAAGTAAGGAGTATACATTCTAATACCTTTGATATGGATATAAAATCTAAAACTGATGGCAATAACAAATGTACACCCATTGATTCTAATACACTGATAAACATTTGGGGATTAAATGTGTTGAATGCATTTGAAAAGGATACTCACAATAAAGAAAACAAATTACCTTTAACTGAAATTGATTTAGCTGTAAAAAGCATAACACTCAATAGTGATCAGGCGGATTCAGGGCCAAACAGAATGAATAACCAGTTGTCTAAAACAGAAAATGATTTGGCTGTAAAATCATTACAGTTTGAAGAATTCGACACAGAATCTAAAATTAAAAGTATTAATGTAACAATAGACATTGTAGAAGAAACTGAATTTGCAACTAACAGTACAAATAAAATAAGTACAGTAAAAACTCAAAATCATTCAGGAAATAAAAATATCACCATAGAACCAAAGTTTGTAGATAATATAACCGAAATTCCTTTAAATGAAAACAATATAGAAATGAAATCATCACAATTTGAGGAAGTAAAAACTAAATCATTGTTTACAAGTAATTTTGTAAATGAGGAAGTTGTAAAACAAATCATTAAAGATCAGGATTTAGGTAAAAGTCATGGACTAGCTATGAAACCGTTACATATTGAGGAATTAGAAAGTGAATCTATAGTTAACAATAATCATGTAAATATTGAAAATAGAACGCTGATTGAAGATAAGGATCTAGGTGAAAATCATGAACAAGCTATAGAATCGTTACAGTATATGAAATTGATAACTAAACCATCAGTTCCAAGTGATTATGTAAATAGTGACGGTCTAAAGGGAATTGTTGAAGAAAAAATCGATCAAAATTATGTACATGACTTATTATTAGACAATTTGAAATTCACAACACAGGATGTAATTAAACAAAGCCCAGGAGATGTAATTGATAAAAATCTTGAGGTTGCATTGAAGGATGAGGCTAATAAAGATTTTTCTTTAGATGAATTACTAGTTTCTCCTGTAGCAGATTTCGCCCCGGCTAATGGCATTGCTACTGTTTCGACGCCGACTATAAATAATATACTTTTTGGCGAAAAACTTGATGAAGATAGTATTCCTGAGGCAGAACATTACAACAGAAAATGTGATGAAGAAAAAGATATTGACGCTTTAGAAGAATTCTTCAAAGAAGGCGTCAAAGACTTTGAAACTTTAGCACCAGTAGAGACTAATGTGACCTCAGATTGGAGATATGATTTACAAAACAGCCATTGCAATATTTGTGATCAAAAATATAGTTCAGTAAGGTCACTGAAAATACATCTATCTAGAATGCACTTTATCACATCACATTTAAAGAGAAAAAGTCATGAAAAAACTGTTTGTATACAATGTGGTCTGACTCTACATAAAAGCAATCTATCCAAACATATGAGAACACATATAAAGGTTGCAAGTGAGTACAAATGTGAAATTTGTGCAATAACATATGCAACTATGGGCAAATACGTTGCCCATATGAAAATGCACAATTCATTGAAGCTTGATCGACCAACCGAAATAAAAGAAGAGACCAAAGGCTTACAATGCGAAATTTGCAAACGAACAGTTACTACTGTATCCAAATTGAAACAACATATGAAATCTCATGACAAAGAGACAAAAACTGATAAGCAATCCAAGCAATTTATTTGCAGTATATGCGGAGCCAGCTTCAGTGCTCGCATTACTTTTATTATACACGAGAAACAGCATAGGGAAGATTACCTTTTCAAATGCGATATTTGTGGTAAAGGTTTTTATAGAAAATGCAACCTGAATAACCATATGAAACATCATATTGGAGAGAAGTCCTACAAATGTACGCAGTGTGATGCCGCCTATATCTTGAAACATTCACTGGTTGTACACATGAGAAAACACATAGGTGAATATTTCGAATGCGACCACTGCTCCAGAAGGTATCTAGCAAAGAATCAGCTAAAGCAACATCTACGAGACTGCAGGGAATGTTTCAGGAAGAGAAACAATATAGAAAAGAAACCCATGAAAAAAGTTACTAAACCACGTTTGGAATGTAAATATTGCTCACTAACGTTTTACTCGAAAATGAATTTGGTTTATCATCAAAATACAACCGATTGCGGGAAGAAGCTGTATGAGGAACTCGGTACAAATATGGTGGTTGATTAA
Protein Sequence: MSFMKASQDELLDGFCRGCLKKYYDPAELLHYTEKNRRLFVYSTGIQVKRNDTLTFQLCKDCSTNMKISCKFKKQCRSSERRFKSYLRLKELGDNIDLLTFLRNSDDNFKFPLLSGNSTPATQKNRDDDNESTCASMRNFISDILQGEEMPDTEARIIKEVIEEEADLLEDSLDSHWLQDDASMDNDYRLDFSFSPFTTPRSVNNNLFNTPIKQFEPNLNYKNNHAKKVFQQLPTSQCSVDDNVAKIIQSKKSEQNCDTKQKARIDPNILIKEVKNDDLAIFSMDDSITELLNKNEDLFPLPDQNEIEVRSIHSNTFDMDIKSKTDGNNKCTPIDSNTLINIWGLNVLNAFEKDTHNKENKLPLTEIDLAVKSITLNSDQADSGPNRMNNQLSKTENDLAVKSLQFEEFDTESKIKSINVTIDIVEETEFATNSTNKISTVKTQNHSGNKNITIEPKFVDNITEIPLNENNIEMKSSQFEEVKTKSLFTSNFVNEEVVKQIIKDQDLGKSHGLAMKPLHIEELESESIVNNNHVNIENRTLIEDKDLGENHEQAIESLQYMKLITKPSVPSDYVNSDGLKGIVEEKIDQNYVHDLLLDNLKFTTQDVIKQSPGDVIDKNLEVALKDEANKDFSLDELLVSPVADFAPANGIATVSTPTINNILFGEKLDEDSIPEAEHYNRKCDEEKDIDALEEFFKEGVKDFETLAPVETNVTSDWRYDLQNSHCNICDQKYSSVRSLKIHLSRMHFITSHLKRKSHEKTVCIQCGLTLHKSNLSKHMRTHIKVASEYKCEICAITYATMGKYVAHMKMHNSLKLDRPTEIKEETKGLQCEICKRTVTTVSKLKQHMKSHDKETKTDKQSKQFICSICGASFSARITFIIHEKQHREDYLFKCDICGKGFYRKCNLNNHMKHHIGEKSYKCTQCDAAYILKHSLVVHMRKHIGEYFECDHCSRRYLAKNQLKQHLRDCRECFRKRNNIEKKPMKKVTKPRLECKYCSLTFYSKMNLVYHQNTTDCGKKLYEELGTNMVVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -