Cmed063600.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- znf711
- Assembly
- GCA_014851415.1
- Location
- Chr24:7485783-7488802[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00085 0.056 13.8 4.0 1 23 164 187 164 187 0.97 2 12 0.0013 0.086 13.2 0.4 1 23 196 219 196 219 0.96 3 12 0.0035 0.23 11.8 0.8 1 23 231 254 231 254 0.97 4 12 0.0013 0.087 13.1 3.3 1 23 263 286 263 286 0.95 5 12 4.3e-06 0.00028 21.0 2.1 1 23 298 321 298 321 0.97 6 12 0.00011 0.0073 16.5 2.3 2 23 372 394 371 394 0.94 7 12 0.00089 0.058 13.7 1.9 1 23 416 439 416 440 0.94 8 12 0.016 1 9.7 0.1 2 23 446 467 445 467 0.96 9 12 0.0095 0.62 10.5 1.5 2 23 474 495 473 495 0.97 10 12 0.31 21 5.7 1.2 2 23 533 554 532 554 0.92 11 12 0.0032 0.21 11.9 0.2 1 23 561 583 561 583 0.97 12 12 0.22 14 6.2 2.4 1 23 589 612 589 612 0.96
Sequence Information
- Coding Sequence
- ATGGTGTCAATCAAAGAGGAAATAGACATTAAGATAAAAAAAGAATATCCAGACATTAAAATAAAAATAGAAGAACCAGAACTGGATTATTTGAACAGGAAAGATCCAACGTCTTTCTTGCCGGAAGAACCGATGTCATATGAAATCAAAGAGAAAAAGAAAAAGAAGAAGAAAAAGAAACAACAAGAAGATCCGTTTAAAGATATCGATGTAGATACGAAAATGACGTATATAGAACCCTCTTTAGAGTTAAAAATGGACCCAGAGGTCAACATTAAGGCTGAAAATATCGAAGTAGAGTTGGATTTTAATGATTTCGCGAACAACTCCGGGCTGATGGTGGAAGGCCCTCAAAGCGAAGATAGTCAAGAACCAATAGTCAAACTCGAGGACCAAAACCGGGAAGCGGTACTACTCACCTTCGAGAGTGTCATCAACGATTCAGTCCTAGGATACTCCGAACCCGCCCACCAACCACCCACGCCAACCTTCATTTGCAAGGTTTGCCATCTAGCCTTTCAATCAAACAAAACTCTACGTATGCATCAGAAGCGAAAGCACAAAGTCTATAGGCGATCCTTCAAACATATCTGTGACAGCTGCGGAATGGCTTACGAGATGAAGAATAGTTTAGTAGCACATATCAGAAGAAAACATGGCCCCAATGCTAGTCCGGATGATAAAGAAGAACACACATGCGAAATTTGTGCTCTCGTCTTCAAAGGAATAGCAAGATTGAGAATGCACATGCGAAGAAAGCACGGGTCTTTCGAAGAATCCTTCAAGCATGCCTGCAAACACTGCGGCTTAACCTACGATAAGTACAGAAGTCTCATAGTACATATCCAACGAAAGCATAGTACACAGAAAATACCTATCACCAACCAGTGGTTTAACTGTCCGTTCTGCCCCAAAATTTTCACAAGACGAGAAACCTACACTCGCCATATACAGAGGAAACATAAAGTCTCCGAAGAGGATGCTCAAAAAGAAGCGGAGACGATGCCAGATTATTTAGAAACAAGCCGAAATGAGGAAACGGCTAAAGAGAGTTACAGACGACATGTATTGTTAAAGCATCCGACGGATAACCCATTAAATTTACAAGCGCAAAAATGCGATCAGTGCAACGAAACATTTAGGGACGAATTCGAATTATGTCGGCACATCAATTTCGTCCACAGAAGGGAAACGCAAGACGCACAATTTGATGTTAAAAAGGAGGATTTCGATATAAAAAATGCGTTTCAATGTACAAAGTGTCCTGAGATGTATCAGACGTGGGAAACGTTAAAGCTGCATTATGAACAGAATCACCACTTATCAGGAGAAACTCAGTGCCAAATCTGCGGGGAACTGTTTCCAGGGACAGAACTTCAGAAGCATATTAAAACCGTTCACACTGATAATATACCTGTTAAATGTAAATACTGTGAGTTCGAAACTACTAATAGAGCTAGTATGACACAGCACACATTGAGACACAAGAATGCTACAACGTTGCATTGTGATTTCTCCGGGTGTAAATATAAGAGTTACTACGATGGTGCCATGCAAAAACATAGGCTAAAGCATATGGAATTAGGAGTGAAGTTGCAATGTACCAAATGCACATTTCAGACGATGAATAAATATTTACTGAGATACCACGAGGAAGCACATATGACGGGGAAGAAGAGGTACAAATGTGACCAATGTGATTATGCAACGATACTGCCAGCTAACTTGGTGCAGCACAAATACAAACATTCGACTGAGAAGAGGTTCAAATGTGAAGTTTGTCCGTTCGAGACCAAGTACAATACGTCCCTACGTTTTCATGTTAAGAAGAAACATTGTGATCTCCCAAGTTTCAGTTAA
- Protein Sequence
- MVSIKEEIDIKIKKEYPDIKIKIEEPELDYLNRKDPTSFLPEEPMSYEIKEKKKKKKKKKQQEDPFKDIDVDTKMTYIEPSLELKMDPEVNIKAENIEVELDFNDFANNSGLMVEGPQSEDSQEPIVKLEDQNREAVLLTFESVINDSVLGYSEPAHQPPTPTFICKVCHLAFQSNKTLRMHQKRKHKVYRRSFKHICDSCGMAYEMKNSLVAHIRRKHGPNASPDDKEEHTCEICALVFKGIARLRMHMRRKHGSFEESFKHACKHCGLTYDKYRSLIVHIQRKHSTQKIPITNQWFNCPFCPKIFTRRETYTRHIQRKHKVSEEDAQKEAETMPDYLETSRNEETAKESYRRHVLLKHPTDNPLNLQAQKCDQCNETFRDEFELCRHINFVHRRETQDAQFDVKKEDFDIKNAFQCTKCPEMYQTWETLKLHYEQNHHLSGETQCQICGELFPGTELQKHIKTVHTDNIPVKCKYCEFETTNRASMTQHTLRHKNATTLHCDFSGCKYKSYYDGAMQKHRLKHMELGVKLQCTKCTFQTMNKYLLRYHEEAHMTGKKRYKCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFETKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -