Cmed122120.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- Chr16:1227551-1231885[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.15 10 6.7 0.3 3 19 146 159 144 163 0.60 2 9 3.1e-05 0.0021 18.3 1.0 1 23 172 195 172 195 0.97 3 9 0.45 30 5.2 0.1 2 11 201 210 200 220 0.84 4 9 0.00032 0.021 15.1 0.1 1 23 227 249 227 249 0.97 5 9 0.00025 0.017 15.4 2.1 1 23 255 278 255 278 0.95 6 9 0.00052 0.034 14.4 7.3 3 23 286 306 284 306 0.96 7 9 8.4e-06 0.00055 20.1 0.6 1 23 312 334 312 334 0.97 8 9 3e-06 0.0002 21.5 0.5 1 23 340 362 340 362 0.98 9 9 0.00065 0.043 14.1 6.8 1 23 368 391 368 391 0.96
Sequence Information
- Coding Sequence
- GTGGAAGAAGATTCAAAAGTTAGTACAAAGTTATGTTTAAAATGTTATAGAAAAATAATTTATTTCTACAAGTTCAAAACGTTGGCGCTGAAGAATGATACATTTTTAAGAACAGCAGAATCGAAAGGATATGTGAAAAATGAAATATTCCTTCATGATGAAACTAAAAATGAAGATGTGTTGAGATGTGAGAGTAATGATGTTGATGAATTACTTGACATCAAAGTGGAACCAGGCTTAGGTGATAATGAATCGGAGGGCCATTCAGATAATGAGCTTCTTAGTGTTATTAAAAAGATCAAATATGAGTTTGTTTCTGAAGATCCCATAGAAGAGACCAAAGAAAATGCACCTGCCAAAAAAAAACCTGGTAAAAGGGGAAGACCAAAAAGCTTGAAAGAGAAGACTAGTAAAGGACCAAGTACATCTCAAATATGTGATGAGTGCGGCAAAACAGTGAAGAACCTTAAAGAGCATTCACTCCTGCATCTACCTGCGTCTGTCAGAAAGAGATACCCTTGCAAGGTGTGTGACAAGACGTTCGCATCATACAGTGCCCGGAATAAGCACAATAGGATAAAACATCTAGGACTCAAAAAGACGTGCCCCATTTGTAATAAATCGGTGGTATCCATGCGAGCCCACACCCTGCTCATGCACAACAGCTCGGAGCTGCGGTACCAGTGCGCGCCGTGCGGCCGGCGGTTCATCTCGCAGTCGGCGCTGGACGCACACACGTCCGTGCACACCAAGGACCGCCCGCACGCCTGCGACAAGTGCGACAAGAAGTTCCGCAGCAAGATCGTGCTGTTGCAACACACACGTCAAGTTCACGAAAAAGAAAAATCACACCTCTGCCAATTTTGTTCCAAGAGCTTTTTCAAGAAATATCACCTTCAAGTACATTTAAGGAGCCACACAAAAGAGAAGCCATACCAATGTCCGGACTGCGACAAGTCGTTCTCATCGACCACCATCCTGAACAACCACCGCTCGGTGCACTCCGACGTGAAGAGCTTCGAGTGCACGCTCTGCAGCATGACCTTCGCCAGATCCGGATACTTGAAGGTCCACATGCTAAGCCACACCAAAGAAAAGAAGCATCCTTGCAAATACTGCGGCGTGAAGTTCTCGCGCACCGACCACCGCAACCGCCACCAACACACGGCGCACGAGCGCCATCTGCTGGCCGGCGCCAAAGAGGTCCGCCCCCCCGCGCGAAGGATACCCAGCCTTACCCCTAAGGACACAGAGGCGCTTCTTGATCGTCAAATAACCCTCCCCGTACTGACCTACTGA
- Protein Sequence
- VEEDSKVSTKLCLKCYRKIIYFYKFKTLALKNDTFLRTAESKGYVKNEIFLHDETKNEDVLRCESNDVDELLDIKVEPGLGDNESEGHSDNELLSVIKKIKYEFVSEDPIEETKENAPAKKKPGKRGRPKSLKEKTSKGPSTSQICDECGKTVKNLKEHSLLHLPASVRKRYPCKVCDKTFASYSARNKHNRIKHLGLKKTCPICNKSVVSMRAHTLLMHNSSELRYQCAPCGRRFISQSALDAHTSVHTKDRPHACDKCDKKFRSKIVLLQHTRQVHEKEKSHLCQFCSKSFFKKYHLQVHLRSHTKEKPYQCPDCDKSFSSTTILNNHRSVHSDVKSFECTLCSMTFARSGYLKVHMLSHTKEKKHPCKYCGVKFSRTDHRNRHQHTAHERHLLAGAKEVRPPARRIPSLTPKDTEALLDRQITLPVLTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -