Cmed104750.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- Zfa
- Assembly
- GCA_014851415.1
- Location
- ctg1963:10980-24159[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0014 0.091 13.1 1.1 1 23 160 182 160 182 0.99 2 10 5.7e-05 0.0037 17.5 1.5 1 23 189 211 189 211 0.97 3 10 0.13 8.8 6.8 0.7 1 23 215 238 215 238 0.91 4 10 0.076 5 7.6 0.5 1 10 245 254 245 255 0.96 5 10 6.8e-06 0.00044 20.4 2.2 1 23 270 292 270 292 0.96 6 10 0.00031 0.02 15.2 1.1 1 22 298 319 298 323 0.93 7 10 0.00033 0.022 15.1 2.0 3 23 333 354 332 354 0.97 8 10 0.00023 0.015 15.6 0.1 1 23 360 383 360 383 0.98 9 10 8.4e-05 0.0055 16.9 0.7 1 23 392 414 392 414 0.98 10 10 0.00066 0.043 14.1 0.1 1 23 420 443 420 443 0.96
Sequence Information
- Coding Sequence
- ATGGTCCGAGCACAGACCCAGTCACTTGTCAAACTGACACCCATCCCACTATTGAACATTGTAGACTTGGATGGACATGACACGGGACAGGATGAAACCTTCACCATTGTAGAGAGGAAAGAAGTCAAGATCAAAGTAGAGGTGATGAAGGAGGAAGACAATGAGGCTTTTGAGCATTTGGAGGCAGAATATGTGGATGATGATGAGTTCCAAGGGTCAATAGTAAAGGAAGAGAGTGATTTTCCATTAAAAGCGCTTTTGAAAGAAGAAATAGAGATAGAAAGTGACAATAAAGATTTGAACTGTCTCAAGAAAATTTTGAAAAAGAGTAAAGTCAAGAAAAAAGGAGAGAAGAATAAAATTGGAAAGGCATCCATAACAGAGTTCCCAAAAGCAAGAACAGTATATGTTTCAATAGAAGAATGTTTGAGGGAAAGAGCTGGCAAGATGGAGGACAAGCAGTACTTAAGGTCGTTGTACAAATGCGTAAACTGCGTTAGAGGCTTTATGTTTAGAGGTAGCTTCGAGAAGCATATGGAAAGACACAGCGAGGAAAATGGAAATTTCATATGTGATATTTGTAAACAGAGATTTAGTTCAGATGATAAATTAGTTAAACATAGAAGATACCACCTAGTTCGATATAAATGCTCAATGTGCGAGTTGACGCGAGCGAGCCGGCACTCGGTGACGGACCACTACGCCGCCGACCACCGCCACGGCTACCACCAGTACAACTGCCCGCACTGCCCCAAGGTGTTCTTGAAGCACCCCAAGAACGTAGGGGCTGTGGAGCAGAGCAAGCGCCACGTGTGCCAGGAGTGCGGGAAGGCCTTCAACGCGCCCTCACACCTCAAGAAGCATAGCATCAAGCACTCGCACAAGAGGGACTACTACTGCGTAGAGTGCGATAAGAGCTTCAAGTCTGACTCTATTCTGAAGCATCATTTGAAGACTGCGTCACCACACGTCAACTATTTAGAGCTCCCATTATTATGTCTTCACTGCGACAAGCGGTTTGCCATCAAACGGGACCTGGAGAGGCACACCAACCGAGTCCACTTGAATATCAAGCCGTACCAGTGTGATCAGTGTGAAAAGGCGTACGTGAACGGCTGGTCGCTGAACGAACACAAGCGCATCGTACACGAGGGCTACAAGCGGCCGCTTCGCTTCCCCTGCACCTTCTGTGATAAAGTCTTTGATCGCAACCAGATACTGAAAGGCCACCTCCGCACGCACACAGGCGAGCGGCCCTACCAGTGCAGCCGCTGTCCCGCGCAGTTCAGCCAGGCCAGTGTGCTGGCTACGCATGTTAAGCTTATCCACCTTAAACTGACCAGGGACGGGAAGCCCAAGCCCGGCAAGTGA
- Protein Sequence
- MVRAQTQSLVKLTPIPLLNIVDLDGHDTGQDETFTIVERKEVKIKVEVMKEEDNEAFEHLEAEYVDDDEFQGSIVKEESDFPLKALLKEEIEIESDNKDLNCLKKILKKSKVKKKGEKNKIGKASITEFPKARTVYVSIEECLRERAGKMEDKQYLRSLYKCVNCVRGFMFRGSFEKHMERHSEENGNFICDICKQRFSSDDKLVKHRRYHLVRYKCSMCELTRASRHSVTDHYAADHRHGYHQYNCPHCPKVFLKHPKNVGAVEQSKRHVCQECGKAFNAPSHLKKHSIKHSHKRDYYCVECDKSFKSDSILKHHLKTASPHVNYLELPLLCLHCDKRFAIKRDLERHTNRVHLNIKPYQCDQCEKAYVNGWSLNEHKRIVHEGYKRPLRFPCTFCDKVFDRNQILKGHLRTHTGERPYQCSRCPAQFSQASVLATHVKLIHLKLTRDGKPKPGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -