Cmed080820.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- ctg4321:15423-17290[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.2 13 6.3 0.9 1 22 172 193 172 195 0.89 2 10 0.00029 0.019 15.2 0.1 2 23 199 221 198 221 0.93 3 10 0.044 2.9 8.4 1.1 1 23 223 246 223 246 0.93 4 10 0.00075 0.049 13.9 0.6 1 23 249 271 249 271 0.98 5 10 6.4e-05 0.0042 17.3 0.8 2 21 276 295 275 296 0.94 6 10 1.6e-05 0.001 19.2 0.3 1 23 315 338 315 338 0.94 7 10 3e-06 0.0002 21.5 1.8 1 23 344 366 344 366 0.97 8 10 0.00011 0.0072 16.5 1.3 1 23 372 394 372 394 0.99 9 10 0.0008 0.052 13.8 0.8 1 23 400 423 400 423 0.95 10 10 0.0012 0.08 13.3 6.0 2 23 429 450 428 451 0.94
Sequence Information
- Coding Sequence
- AGAAATAAAAGCAAAATGTTTCCTCTAACGGATGAATCTCAGGAATCTGAATTAAACGTTTTGGTGTCTAACATTGTCAACGAAAGTCGGTTTAGCCACTGCAGGTTATGTTTGAAACAGATCACAGATAAATACGTGAGATTTAATGACTTCGTTACTTTGGATTCGTGTTCTGCTGAATTCCGCCCTCTCTCCGAGTTTCTTAAGAAAGCTTTGGGTAGCGATGAGATATTTGAAGAGATATTAGGAATCGATGCAGTATGTCTAAGCTGTGTTGATAAAGCTCTCCAAGTCATCAAATTCATGGATATGTGTAAAAACTCAAATGAATTACTACATAAAGTGTTCAACAATTTGATGGAGACATTGAACATAGATATTGATACTTTCCAAAATAAAAGTTTATACATTGTCGTTAATGAACAAGAGACTAATATTATACTTGTTAAGAAAGATGAAGAGAAAGAAAACGTTAACATTCAGAAACATAGGCAAAAGAAGAAGAAGAGGCAATTTGAATGTTACAAATGTGATGAAATCTTACACAGTCTTGATGACTTCAGGGCACATAACTTAGGTTTTCATAGTTTGTTGACATGTGATTTATGCCAAGAAACATATTCCAGTGAAGATGACCTGGAAACTCATTTAAATGATGCTCACCAACATCAATGCACCCTATGTAGTCTCCGAACCAATTCTGAAGAAGAGCTGAAGGATCATGTTGGTAAATATCATAACAACTATGTGTGTAAAGAATGTGGCATATCCTGCCAAGGCCTAGACAAGTTGCGAGCCCATGAAATGAAACATGTTTCTAAAAACAAATGTCCAAAGTGTGGAAAGACATACTCAACTAAAGAGTTTTATCTAAAGCATGTGAAATTGTGCTTAGAAGATCTCTTGGACCCACATCCAATCAGGAATGAAATTGTTAAAACATACTTCTGTAATATTTGTGGGAAGGGTTATAGTACACCTGGTGGGCTAAGAGTCCACAGTAGGTTTACGCATGGGAATGCCAAGCCTCATGAGTGCAAGTTTTGTGGAAAGCAATTCACAGCCCCGAGTTACTTGAAGATTCACATGATAAAACACACGGGGGAAAAGAACTTTAAATGTGATATTTGTTCCAACAAGTTTGTGTCTAAAGAAGCACTGTTGTACCACACTCGAAGACATACTGGTGAAAGGCCATATTCCTGTAAATATTGTACTGAAAGATTTGTCAATGCATCTGCTAGAGCAGAACACATTAAATTTAAGCATGTGGGTCCTACACTAATGTGTGAAATATGTTCACATAAGTTTGTTACTCCTCACTTTTTGAAGCAACACATGAGCAGACATCACGACCCTACAAGCAAACTGTATGTAGCTCGAACATTGGCTCCAGATATGCCAGGCGAAGAGAACAAAAAGATCAAATATGAAAACAGACATTAA
- Protein Sequence
- RNKSKMFPLTDESQESELNVLVSNIVNESRFSHCRLCLKQITDKYVRFNDFVTLDSCSAEFRPLSEFLKKALGSDEIFEEILGIDAVCLSCVDKALQVIKFMDMCKNSNELLHKVFNNLMETLNIDIDTFQNKSLYIVVNEQETNIILVKKDEEKENVNIQKHRQKKKKRQFECYKCDEILHSLDDFRAHNLGFHSLLTCDLCQETYSSEDDLETHLNDAHQHQCTLCSLRTNSEEELKDHVGKYHNNYVCKECGISCQGLDKLRAHEMKHVSKNKCPKCGKTYSTKEFYLKHVKLCLEDLLDPHPIRNEIVKTYFCNICGKGYSTPGGLRVHSRFTHGNAKPHECKFCGKQFTAPSYLKIHMIKHTGEKNFKCDICSNKFVSKEALLYHTRRHTGERPYSCKYCTERFVNASARAEHIKFKHVGPTLMCEICSHKFVTPHFLKQHMSRHHDPTSKLYVARTLAPDMPGEENKKIKYENRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00961242;
- 90% Identity
- -
- 80% Identity
- -