Cmed139730.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- Chr3:9460868-9502915[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.01 0.67 10.4 1.0 2 23 184 206 183 206 0.94 2 12 3.2 2.1e+02 2.5 0.2 5 23 215 233 213 233 0.92 3 12 0.00094 0.062 13.6 3.3 1 23 266 289 266 289 0.93 4 12 0.099 6.5 7.3 0.3 5 23 298 316 297 316 0.95 5 12 0.012 0.8 10.1 2.0 2 23 323 344 322 344 0.96 6 12 3.7e-05 0.0024 18.1 1.9 1 23 352 374 352 374 0.97 7 12 0.0043 0.28 11.6 1.3 1 23 383 406 383 406 0.97 8 12 0.00029 0.019 15.2 0.2 1 23 412 434 412 434 0.97 9 12 1.5e-06 0.0001 22.4 4.2 1 23 440 462 440 462 0.98 10 12 0.00015 0.0099 16.1 1.1 1 23 467 489 467 489 0.98 11 12 5.7e-05 0.0037 17.5 6.2 1 23 495 517 495 517 0.97 12 12 0.0003 0.019 15.2 2.1 2 23 524 546 523 546 0.95
Sequence Information
- Coding Sequence
- ATGCAGATACATGAGAATGATGAATTACCAACCAAAATATGTCTGAATTGTGAAGAAAAAATGGTTTCGTTTCAATTGTTTATTCTGGAATGCTTTAAAGCTCAAGAGACTTTAAAAAATCTGTATTTAGATGCTGCTGATGTCAGAGTGAAACTTGAGTCAATTGAGTTTGGTGCACCACCAGATACAGTCATTAAGTCTGAGGTGAAAGATGAACTTACAGCAGAGGATATTGTGTTATGTGCAATTGCAAATCCTGTCACCGTCTTTGACAATAAAAGTGATGATTTCAATGATTTTACTAACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACAATGTAACATTAGCTTCTCTAAAAAAGGAGAAAATTCAAGATACAGAAGCACCAGTTAAAACAGAGAAAGTAAAGCGCTATAAAACATATAAGAAAAAAGCTATCTGTCAAGATTCTGCTGAGGTGGAAAAAGTTCTTCAAAAAGCTGATTGGAAAGTGAGGGATTTTGTCAAACTGCAATGTGATAAATGTGAGCAGAAAATGAAATCATGGAGTGAATTACGTGTTCATTATTATAAGACACATAAAAGTAAACCACTGGTAAATTGCGTTTGTGGCTTCGTCATCAGATCCAAGAGTGTCCTGTACAAGCATGTGTCTGACCACAAGATAAAAAGTCAGAAATCAAGTGGTGTAGAAAATGAATCTAAGAATGAAGTAGATTCAAAATATTCCAGTCTCAAAATCAATGATTTTGTTACGTTCAATTGTACTGTTTGCCAAAAGAAGTGCTCAAGTTGGTACAGTTTGCGTTCCCACAGTGAAAGGGTGCATAATATTGCACCTGTGGTTCAGTGCATTTGTGGTATTACACTCAAGTCTAAATCTGTTCTCTACAAACACATTCAAGATCACAAGAATCCAAATATGTTATGCTGCGACAAGTGTCCAAGAATAACCAAAACAATAGAAGCACTCAACAAACACAAGATGAGACACATACCAAAATCTGAAAGGAAATTCTGCTGTGCTACATGTGATAAAATATTTATAACGAAAGATGCCTTAAAATCTCATGAAAGATCTCACATTCCCATTGAGGACAGAAAGATTTACCATTGTGGAGTATGTTCTCTGAAATTCACGACCCGGTCGTCGGCGGCGTCGCACAAGCGCGTGGTGCACGACAAGATCAAGAGCTACGTGTGCGACCTGTGCGGCTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATACACAGCGACGACAAGCCCTTCGTCTGCAAGACCTGCTCCAAGCCGTTCAAGACCCACTCGAATCTCAAGACCCACATGGACACGCACGAAGACACGTCGTACCAGTGCTACGTGTGCAACCGCGTGCTGAACAGCCGCCGCACGCTGCGCAAGCACCTGCTCGTGCACGAGGAGAAGTGCCGCCACGTCTGCTCCTACTGCCACAAAGCCTTCAAGAGGAGACAGACGCTCAAGGTCCACCTATACACGCACACGGGTGACAAGCCCCTCACATGCAAGTGGTGCGACGAGCGCTTCGCGTACGCGTCCACACTCCGCTCGCACCGGCTGCGCTGCCACCCCGACAAGATGGCGGCGCAGGCCGCCAACAACGCCTACGCGGCGTATGCGCACGTGCCCGTGCCCGTGCAGGAGCACCTCGAAGTCAAGAACATCACTTTGGACGCCAACAACTCCCACACTGATAATGGCAGGGGTCACTCGGTACTCCAGCCGGCCGTGTACCAGGTGACGCGGCAGGGCCACGAGCACTGCGACGTGTCCGACGGGATGCTGCTCGACATCACGCCCCTGGACGAGGGCGGCTCTAAGCTCTTCACCCTCTACGACAAGGACCTCACTGAAGGCGTCAACTTGCTCATAGTGGTATCCGAGCACTGGGGATCCAAGTGTGTCCGATTAAAAGTAACTGTCAAGTCGGACAACTGCGGGGACTCCCAGGACTGCTCGGGGAAGGGCGTGTGCTACACGAACGTCTCGATGGAAGGCTACGAGTGCCAGTGCTGCCCGGGGTTCTCGGGGCCGCACTGCGAGGAGCGCGAAGCCTGCCATCCATCACCCTGCCGGAATAACGGCGTGTGTGTCGAACTCCCACAGCCGGTAGATTCCGTCTACTACGCCTGCACGTGTCCCTATGGCTTTACCGGCAAGAGGTGTGAAAAGGACCCGTGCTCCAACGCGCCTTGCCTGAACGGCGGGTCCTGCATGACCATGAAAGCCATGAGCGGGTCGACAGTGTTCCATTGCGCGTGCGCGGACGGGTGGACCGGCGCGCGCTGCGAGCTCTCCGTCGCGGGCGGCGCCTGCGCCTCCAACCCGTGCGTGAAGGGTATCTGCATCGAGCAGACCGACAACGACATCGGTGGCGAGCCCTACCGCTGCTTCTGTCAGCCTGGGTATACTGGCGAAAAATGCGAGATAGAGTACAACGAGTGCGAGTCATCCCCATGCGCGAATGGCGGCACGTGCATCGACCGCGTCGCGGCGTTCGCCTGCGTCTGCAGCCGGGGCTACTCGGGCCACCTGTGTCAGCTGAAGGTGGATCTGTGCTCACCGAACCCGTGTCCCCCACGGCGGTATTGCATGGACCGCGGCAACAACTACGTGTGCGAGTGTCCCCGCGGGTTCGTCGGGGACGAGTGCCACATACCAACCAGATCGGCTTGTGACAATAACCCGTGCGCACACGGCGGTACCTGCTGGAGCGGCGTGGACTCCTTCTACTGCTCCTGCAGGCCCGGCTACACGGGCAAGCTCTGCGAAGAGGATTTCATCCTGGAGTCAGTAGTGAGTGACGAGACGAGCATAGGCAGCGAGTCCCGCGGCGGGGGCTCCGTGCGCGAGGTGCGCCTGCCGCTCGGGCTGTACCACGACCGGCTGCACAACGT
- Protein Sequence
- MQIHENDELPTKICLNCEEKMVSFQLFILECFKAQETLKNLYLDAADVRVKLESIEFGAPPDTVIKSEVKDELTAEDIVLCAIANPVTVFDNKSDDFNDFTNXXXXXXXXXXXXXXXXXXXXLDNVTLASLKKEKIQDTEAPVKTEKVKRYKTYKKKAICQDSAEVEKVLQKADWKVRDFVKLQCDKCEQKMKSWSELRVHYYKTHKSKPLVNCVCGFVIRSKSVLYKHVSDHKIKSQKSSGVENESKNEVDSKYSSLKINDFVTFNCTVCQKKCSSWYSLRSHSERVHNIAPVVQCICGITLKSKSVLYKHIQDHKNPNMLCCDKCPRITKTIEALNKHKMRHIPKSERKFCCATCDKIFITKDALKSHERSHIPIEDRKIYHCGVCSLKFTTRSSAASHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCKTCSKPFKTHSNLKTHMDTHEDTSYQCYVCNRVLNSRRTLRKHLLVHEEKCRHVCSYCHKAFKRRQTLKVHLYTHTGDKPLTCKWCDERFAYASTLRSHRLRCHPDKMAAQAANNAYAAYAHVPVPVQEHLEVKNITLDANNSHTDNGRGHSVLQPAVYQVTRQGHEHCDVSDGMLLDITPLDEGGSKLFTLYDKDLTEGVNLLIVVSEHWGSKCVRLKVTVKSDNCGDSQDCSGKGVCYTNVSMEGYECQCCPGFSGPHCEEREACHPSPCRNNGVCVELPQPVDSVYYACTCPYGFTGKRCEKDPCSNAPCLNGGSCMTMKAMSGSTVFHCACADGWTGARCELSVAGGACASNPCVKGICIEQTDNDIGGEPYRCFCQPGYTGEKCEIEYNECESSPCANGGTCIDRVAAFACVCSRGYSGHLCQLKVDLCSPNPCPPRRYCMDRGNNYVCECPRGFVGDECHIPTRSACDNNPCAHGGTCWSGVDSFYCSCRPGYTGKLCEEDFILESVVSDETSIGSESRGGGSVREVRLPLGLYHDRLHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -