Cmed001490.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- ctg2058:17175-34243[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00016 0.01 16.1 2.4 1 23 50 73 50 73 0.95 2 13 0.00059 0.039 14.3 2.7 3 23 82 103 80 103 0.93 3 13 7.5 4.9e+02 1.3 1.3 2 16 111 125 110 127 0.88 4 13 0.00016 0.01 16.1 2.4 1 23 157 180 157 180 0.95 5 13 0.00059 0.039 14.3 2.7 3 23 189 210 187 210 0.93 6 13 0.25 16 6.0 5.3 2 23 230 252 229 252 0.95 7 13 4.4e-05 0.0029 17.8 0.3 2 23 260 282 259 282 0.91 8 13 0.019 1.2 9.5 7.6 1 23 289 312 289 312 0.93 9 13 0.0013 0.088 13.1 7.3 1 23 318 341 318 341 0.95 10 13 8.3e-05 0.0055 16.9 0.2 2 23 349 370 348 370 0.97 11 13 0.0012 0.076 13.3 2.2 2 23 378 400 377 400 0.96 12 13 8.2e-05 0.0054 17.0 3.0 2 23 407 429 406 429 0.94 13 13 6.4e-05 0.0042 17.3 3.8 1 23 439 461 439 461 0.97
Sequence Information
- Coding Sequence
- ATGGCGCCACTGGAGAAGCCTTCGGAGAAGAAGGTGATGAAGTTCATCAGCGTGAACAGCGAGGTCCTCACCGACGAGCAGCGCGAGATGTACGAGTCGGTGCTGTCCACGTGGAAGCCGGTCATGTTTCCTAAGCGGATGAAGAGGTACATCTGCACAAAATGCAACAAAGAATTCAAGAACTACCAGAACCTGTACCTCCACACAACGCGCGTTCACTCCTCCGAGGAGTCCGCGGTCATGTGCGACGCCTGCGACAAGAGCTTCAAGAACAAGCATTATCTGTACATGCATCGTATGAACAAGCATTACTCCGAACACGAGAAATGCTACTGCCAGTTCTGCCTGCAAGAGTTCCGCACGCGGCGCGCGTTGCACATGCCGTCAAGCGCATCCACCCCAACACGCTGCCGGAGCTCAAGTGTCCGGAGTGGCGGGAAGGAGTTCGCTGTGCCGTACAAACTGAGGTACATCTGCACAAAATGCAACAAAGAATTCAAGAACTACCAGAACCTGTACCTCCACACAACGCGCGTTCACTCCTCCGAGGAGTCAGCCGTCATGTGCGACGCGTGCGACAAGAGCTTCAAGAACAAGCACTACCTGTACATGCATCGTATGAACAAGCATACTCCGAACACGAGGAACAAGCATTACTCCGAACACGAGGTGCGTACCGAGAAATGCTACTGCCAGTTCTGCCTGCAAGAGTTCCGCACGCGGCGCGCGCTGCACATGCACGTGAAGCGCATCCACCCCAACACGCTGCCGGAGCTCAAGTGTCCGGAGTGCGGGAAGGAGTTCGCTGTGCCGTACAAACTGAGGTATCACATAGACGCGTGCCACCGGCCGGACAAGGACAAATACAAGTGTCACGTCTGCGAGAAGCTGTACAAGAGCCATCTCAACCTTAACCGGCACCTCCACTTCCAGCACGGGCAGGTGGAGCGGCACAAGTGCGTGTTCTGCGACATGACGTTCAAGTCGCGCCACCACATGAAGCGCCACATACTGAACATACACCCGCCTCTCGAGTCCAAAGTCAGCTGTCCCGAGTGTCTGAAGGAGTTCAAGAATGATCAGTACCTTAAGGAACATATGCAGGTCCACTCGTCTCTAGATACGAAGGTGAAATGCGACTTGTGCGACAAATTCTTCCACTCGGCGGTGCGCCTCAAGAAACACAAGAAAATAGTGCATCCCACCAAACCGAAGATCCGGTGCGAGAAGTGCGACAAGGAGTTCGCGCACGCGCACTACCTTAGGAGGCATAATAACTCGGTCCACATGGAGGTGGACGAGACAAAATACGAACACGAGTGTGCGCAGTGCGGCAAGAAGTTCAAGCTGAAGCGGTACCTCAACAACCACCTGCAGAGACACGAGCAGCAACACCTCAAGCGCATCTCGCAGATGGTCAAGACCGACACCCCCTCTTCCAGAGACACACCTCAAGCGCATCTCGCAGATGGTCAAGACCGAGACACGAGCAGCAACACCTCAAGCGCATCTCGCAGATGGTCAAGACCGAGACACGAGCAGCAACACCTCAAGCGCATCTCGCAGATGGTCAAGACCGAGACACGAGCAGCAACACCTCAAGCGCATCTCGCAGATGGTCAAGACCGAAAGCAGTTAAAAATCGTCCTAAAAGAATCTCTCTTTCCAGTGATGACGGACGACAGAGACGGCGATAAGCCCCAAAGAAAGAGAGGGAGACCGAAGAAAGCGACAAGAGAGGAGATAGAGTTCATCAAGTGCGAGCCTGTCTCCTCTTCCGAAGAGTCGGGGGAGACCGACTCGGAGGACGAAGACGATGAGTAG
- Protein Sequence
- MAPLEKPSEKKVMKFISVNSEVLTDEQREMYESVLSTWKPVMFPKRMKRYICTKCNKEFKNYQNLYLHTTRVHSSEESAVMCDACDKSFKNKHYLYMHRMNKHYSEHEKCYCQFCLQEFRTRRALHMPSSASTPTRCRSSSVRSGGKEFAVPYKLRYICTKCNKEFKNYQNLYLHTTRVHSSEESAVMCDACDKSFKNKHYLYMHRMNKHTPNTRNKHYSEHEVRTEKCYCQFCLQEFRTRRALHMHVKRIHPNTLPELKCPECGKEFAVPYKLRYHIDACHRPDKDKYKCHVCEKLYKSHLNLNRHLHFQHGQVERHKCVFCDMTFKSRHHMKRHILNIHPPLESKVSCPECLKEFKNDQYLKEHMQVHSSLDTKVKCDLCDKFFHSAVRLKKHKKIVHPTKPKIRCEKCDKEFAHAHYLRRHNNSVHMEVDETKYEHECAQCGKKFKLKRYLNNHLQRHEQQHLKRISQMVKTDTPSSRDTPQAHLADGQDRDTSSNTSSASRRWSRPRHEQQHLKRISQMVKTETRAATPQAHLADGQDRKQLKIVLKESLFPVMTDDRDGDKPQRKRGRPKKATREEIEFIKCEPVSSSEESGETDSEDEDDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -