Basic Information

Insect: Cnaphalocrocis medinalis
Gene Symbol: -
Assembly: GCA_014851415.1
Location: Chr30:1369213-1397167[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.2 79 3.8 0.7 4 23 358 377 358 377 0.94

2 15 0.11 6.9 7.2 0.1 2 22 383 403 382 403 0.95

3 15 0.0048 0.31 11.4 0.2 2 23 625 646 624 646 0.95

4 15 0.002 0.13 12.6 5.6 2 23 662 683 661 683 0.97

5 15 7.8e-08 5.1e-06 26.5 2.6 1 23 689 711 689 711 0.98

6 15 3.7 2.4e+02 2.3 0.4 1 14 716 729 716 730 0.90

7 15 0.0048 0.31 11.4 0.2 2 23 747 768 746 768 0.95

8 15 0.002 0.13 12.6 5.6 2 23 784 805 783 805 0.97

9 15 7.8e-08 5.1e-06 26.5 2.6 1 23 811 833 811 833 0.98

10 15 0.47 30 5.1 0.7 1 23 838 860 838 860 0.97

11 15 0.84 55 4.3 0.4 2 23 867 889 866 889 0.94

12 15 0.031 2 8.8 0.3 1 19 896 914 896 915 0.94

13 15 0.001 0.067 13.5 0.1 3 23 928 949 927 949 0.96

14 15 9.5e-06 0.00062 19.9 0.1 2 23 973 995 972 995 0.96

15 15 0.71 47 4.6 5.5 1 23 1001 1025 1001 1025 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.2	79	3.8	0.7	4	23	358	377	358	377	0.94
2	15	0.11	6.9	7.2	0.1	2	22	383	403	382	403	0.95
3	15	0.0048	0.31	11.4	0.2	2	23	625	646	624	646	0.95
4	15	0.002	0.13	12.6	5.6	2	23	662	683	661	683	0.97
5	15	7.8e-08	5.1e-06	26.5	2.6	1	23	689	711	689	711	0.98
6	15	3.7	2.4e+02	2.3	0.4	1	14	716	729	716	730	0.90
7	15	0.0048	0.31	11.4	0.2	2	23	747	768	746	768	0.95
8	15	0.002	0.13	12.6	5.6	2	23	784	805	783	805	0.97
9	15	7.8e-08	5.1e-06	26.5	2.6	1	23	811	833	811	833	0.98
10	15	0.47	30	5.1	0.7	1	23	838	860	838	860	0.97
11	15	0.84	55	4.3	0.4	2	23	867	889	866	889	0.94
12	15	0.031	2	8.8	0.3	1	19	896	914	896	915	0.94
13	15	0.001	0.067	13.5	0.1	3	23	928	949	927	949	0.96
14	15	9.5e-06	0.00062	19.9	0.1	2	23	973	995	972	995	0.96
15	15	0.71	47	4.6	5.5	1	23	1001	1025	1001	1025	0.91

Sequence Information

Coding Sequence: ATGGCTGAATTGAGTAGGAAAAGGGCTAGAAAGTCCAAATTAGTGCACCGAGAATGCGATGAAGAAATGGAGCAAGAGCAGCCACACTCTTCGACCAAACCTCCCATCCAATTCGACATTAAAGTTGAAATAGAATCCTGTGACGAAGATGACTTTACTATTCCTGAAAATCCTCCAGTGAAGACTGAAGTCAAAACTGAATTAGTTAACGAGCATGACATGTTTGAAGCGGAGGAACACGATATCGATGAAGTCGCAAGAGCTTGTTCGTTCATCGCAAATGAAGGGACGAGAGATCAAATTGAACCTATCAAAAAGGTACCTATTGTTTCTAAGATTGTGTTCGAAGACGATGATATATTAGATGCAGAACAAGATATTAATACATTAGCTTCATCATTGGCTTCGAATAATGTACCGGGTAAAAGGAAACGGGTACCGAATAAAAGAAAGGAGTTCGATTACAGCCTTGATGATGATGATGATGATGAAGAACATGATATCAATGCCTTAGCTAACATGTTGGGAGGGGTTAAGAGGAAAGATGGGAAGAAACGGCCGAGTAAAACTATGAAGTTGGATATTAACAAAAAAGCAGAACTCTGGAAACGGCTTGCCTGCGAGGATGATGAAGAATTTGATGAAACGAAACCTATAAAGGTAGAGCCTGAATCTTCGCCTATCAAAGAGGACGGGCCTATTCTCAGTCAAATTAACCCCCAGATCATCGAGCTAGATGATGAAGATGATGTTAACGTTGAAATTCCAGCAGAGACCGATAAAAATAAAGAAATCACAGCAACAAGTCCAAATGAAAATAAAAAAAAATCAGAAGACGATGATATCGTACAAGAAACAAATGATATTATAAAGATTAAGAAAGAATCAAGTGTTGAAGGAATCGAAAATTCATCGGCCTACGAGAACATGCTATCAAAAGTTTTCCACACGAGCACGGATGGAATCTTAGAAATTCAAATAAAATCTGAACCGGCTGATTCAGAGAAAACCGAAGACCCGTTTACTGAGGCTGGGTGTTCGAATGATAAAAAAGACCTATTAAAGAACGGTCACATGTGTGTGTTGTCGTTTCCAACGATCAAAGACTACAGCAGGCATCTGAGTAAACATGGGTACGACTTAAAGACATGTCCGGAGTGCATGGCCCCATTCTCAAGGTTCGGAGTCCTGGAGAAGCACATCAAGACCCGCGTCAGGGGCATGCTGGTGAAGATGCAGTACTTCGTCCGCAGGAAGGAGGGGGAAGGGGCGCAGTTGGTGATCAATCATCAGTGCAGGAAGTGTAAAGAGAACGTGAGTCTAAACGACAGTTTCTCGCACTGGGAGCGTCACCTCGAGATCCGTCCACTGGTGGACGCGCTGACGCCGAAGCTGGAGGTGTCGGAGGGCGAGGGGGGCGAAGTCCGCGTGCGCATCGACGACCCCGCGGCGCGGGAGCCGCCCCGCAGCCCGCCGCGGCCCGGGGAGACCGGCCCGCTGCCGCCCGACTCTGCTCAAGCAGATCATTGTGAGTCTCGAAGTCGGCAACGCCAGCGTCTCCCACCGGGAGCGTCACCTGGGATCCGGCCGCTGGTGGACGCGCTGACGCCGAAGCTGGAGGTGTCGGAGGGCGAGGGGGGCGAAGTCCGCGTGCGCATCGACGACCCCGCGGCGCGGGAGCCGCCCCGCAGCCCGCCGCGGCCCGGGGAGACCCGCCCGCTGCCGCCCGACCTGCTCAAGCAGATCATCGGTGAGTCGCTTATGGAGACTTGGTGTCAAGCAAGCGTCATATGGGAAAGAGCACCGTGCAAACTACCTACCGATGGCGTCGCCACGATCATTGCCGCGCTGTTGGTCCACAAAGGCAACAAGGAGTGCATGGTCTGCGAACGCGTGTTCGACCGACAGAACGACGCCAAGCGACACCTCATCGAGCACCTGTTGGCTGACGCGTATCTCAACAAATACAAGAACAAGATGCTAAAATGCCAAATCTGTCACGACTGCTTCCAACGTTCTGACGAGTACAAACTGCACATGAGGACTCACGGCGGCCTGCCGGTGTACCAGTGCTCGCTGTGCGGGAAGACCTTCAGCGACAGCAGCAACTTCACCAAGCACAAGAAGATACACAACATCGACATATACTCCTGCTTCATCTGCCGGGCCAAGTTTCCTCGCCAAGCGACAGCTGGACAAGCACATAGAGCCGCGCTGCTGGTCCACAAAGGCAACAAGGAGTGCATGGTGTGCGAGCGCGTGTTCGACCGACAGAACGACGCCAAGCGACACCTCATCGAGCACCTGCTGGCGGACGCGTATCTCAACAAATACAAGAACAAGATGCTAAAATGCCAAATATGTCACGACTGCTTCCAACGTTCTGACGAGTATAAGCTCCACATGAGGACTCACGGCGGCCTGCCGGTGTACCAGTGCTCGCTGTGCGGGAAGACCTTCAGCGACAGCAGCAACTTCACCAAGCACAAGAAGATACACAACATCGACATATACTCCTGCTTCATCTGCCGGGCCAAGTTCCTCGCCAAGCGACAGCTGGACAAGCACATAGAGATGCACACAACATCGACGCCCATCACGTGCGGGCTGTGCGGCGCCGAGTGCCTGTCCGAGTCGCGGTACAACCGCCACCTGCGCGTCGTGCACGACACAAGGTTCTACAAATACCGATGCGTGATCTGTAAGAAGCGATTCCAGACCTTGAAAGAGATGTGGGACCACAGCTGGCTTCAGCATAAGGAGAGGAAGTCCAAGGCCGACTGTCCTGTGTGCGGACAGGCGTATAGAAAGATGACGGATTTGAGGATACATGTCCGGGAAATGCACAACATGGATGTAAAAATGCTTAAGGAACTTATGGACGCCAATTTGAAGTCGTCGGCTCTTGGCGAATTGGAATGCCCAGTCTGCGGTCTCACTTACTCATCCAAAGAGCTACTAATGACTCACATAAAGAAAGAACACGGGCAAACTGCGAAACATGTCTGCAAATACTGCCATAAAGAGCAATTTGCAGACAGACGGTGTCTGCTCAGGCATATGGCGGCTAAACATGGTTATAAGCAGAAGAGGAGTAGAAAAATACTTATATTGAGAGACGTTGGGACTGCGGTGGACAAAGGGGCTAAGAGTTCCGTAGAGAATACGGAAGTTGATGTAAATTGA
Protein Sequence: MAELSRKRARKSKLVHRECDEEMEQEQPHSSTKPPIQFDIKVEIESCDEDDFTIPENPPVKTEVKTELVNEHDMFEAEEHDIDEVARACSFIANEGTRDQIEPIKKVPIVSKIVFEDDDILDAEQDINTLASSLASNNVPGKRKRVPNKRKEFDYSLDDDDDDEEHDINALANMLGGVKRKDGKKRPSKTMKLDINKKAELWKRLACEDDEEFDETKPIKVEPESSPIKEDGPILSQINPQIIELDDEDDVNVEIPAETDKNKEITATSPNENKKKSEDDDIVQETNDIIKIKKESSVEGIENSSAYENMLSKVFHTSTDGILEIQIKSEPADSEKTEDPFTEAGCSNDKKDLLKNGHMCVLSFPTIKDYSRHLSKHGYDLKTCPECMAPFSRFGVLEKHIKTRVRGMLVKMQYFVRRKEGEGAQLVINHQCRKCKENVSLNDSFSHWERHLEIRPLVDALTPKLEVSEGEGGEVRVRIDDPAAREPPRSPPRPGETGPLPPDSAQADHCESRSRQRQRLPPGASPGIRPLVDALTPKLEVSEGEGGEVRVRIDDPAAREPPRSPPRPGETRPLPPDLLKQIIGESLMETWCQASVIWERAPCKLPTDGVATIIAALLVHKGNKECMVCERVFDRQNDAKRHLIEHLLADAYLNKYKNKMLKCQICHDCFQRSDEYKLHMRTHGGLPVYQCSLCGKTFSDSSNFTKHKKIHNIDIYSCFICRAKFPRQATAGQAHRAALLVHKGNKECMVCERVFDRQNDAKRHLIEHLLADAYLNKYKNKMLKCQICHDCFQRSDEYKLHMRTHGGLPVYQCSLCGKTFSDSSNFTKHKKIHNIDIYSCFICRAKFLAKRQLDKHIEMHTTSTPITCGLCGAECLSESRYNRHLRVVHDTRFYKYRCVICKKRFQTLKEMWDHSWLQHKERKSKADCPVCGQAYRKMTDLRIHVREMHNMDVKMLKELMDANLKSSALGELECPVCGLTYSSKELLMTHIKKEHGQTAKHVCKYCHKEQFADRRCLLRHMAAKHGYKQKRSRKILILRDVGTAVDKGAKSSVENTEVDVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -