Basic Information

Insect: Cnaphalocrocis medinalis
Gene Symbol: -
Assembly: GCA_014851415.1
Location: Chr13:15720695-15736457[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0093 0.61 10.5 0.2 2 23 95 117 94 117 0.93

2 18 0.029 1.9 9.0 0.3 2 23 342 364 341 364 0.95

3 18 1.7 1.1e+02 3.3 0.3 1 19 372 390 372 392 0.95

4 18 0.0016 0.1 12.9 1.5 3 23 404 424 403 424 0.97

5 18 1.3 88 3.7 0.4 1 22 440 461 440 463 0.73

6 18 8.7 5.7e+02 1.1 3.7 1 23 472 495 472 495 0.90

7 18 3.8 2.5e+02 2.3 0.6 1 23 506 529 506 529 0.90

8 18 0.033 2.2 8.7 0.5 2 23 574 596 574 596 0.87

9 18 8.2 5.4e+02 1.2 0.6 1 23 601 624 601 624 0.83

10 18 2.2e-05 0.0015 18.7 1.9 1 23 630 652 630 652 0.97

11 18 2.6e-06 0.00017 21.7 1.3 1 23 659 681 659 681 0.98

12 18 5.8e-05 0.0038 17.4 2.3 1 23 686 708 686 708 0.96

13 18 0.00036 0.024 14.9 1.2 1 23 714 736 714 736 0.98

14 18 2.1e-05 0.0013 18.8 1.1 1 23 742 764 742 764 0.94

15 18 0.00011 0.0069 16.6 3.4 2 23 771 792 771 792 0.98

16 18 0.00013 0.0087 16.3 0.5 2 23 801 823 800 823 0.97

17 18 0.0033 0.22 11.9 0.3 1 23 828 850 828 850 0.96

18 18 1.1e-05 0.00073 19.7 1.9 1 23 856 879 856 879 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0093	0.61	10.5	0.2	2	23	95	117	94	117	0.93
2	18	0.029	1.9	9.0	0.3	2	23	342	364	341	364	0.95
3	18	1.7	1.1e+02	3.3	0.3	1	19	372	390	372	392	0.95
4	18	0.0016	0.1	12.9	1.5	3	23	404	424	403	424	0.97
5	18	1.3	88	3.7	0.4	1	22	440	461	440	463	0.73
6	18	8.7	5.7e+02	1.1	3.7	1	23	472	495	472	495	0.90
7	18	3.8	2.5e+02	2.3	0.6	1	23	506	529	506	529	0.90
8	18	0.033	2.2	8.7	0.5	2	23	574	596	574	596	0.87
9	18	8.2	5.4e+02	1.2	0.6	1	23	601	624	601	624	0.83
10	18	2.2e-05	0.0015	18.7	1.9	1	23	630	652	630	652	0.97
11	18	2.6e-06	0.00017	21.7	1.3	1	23	659	681	659	681	0.98
12	18	5.8e-05	0.0038	17.4	2.3	1	23	686	708	686	708	0.96
13	18	0.00036	0.024	14.9	1.2	1	23	714	736	714	736	0.98
14	18	2.1e-05	0.0013	18.8	1.1	1	23	742	764	742	764	0.94
15	18	0.00011	0.0069	16.6	3.4	2	23	771	792	771	792	0.98
16	18	0.00013	0.0087	16.3	0.5	2	23	801	823	800	823	0.97
17	18	0.0033	0.22	11.9	0.3	1	23	828	850	828	850	0.96
18	18	1.1e-05	0.00073	19.7	1.9	1	23	856	879	856	879	0.98

Sequence Information

Coding Sequence: ATGTCTTCGGATGAATCTGACGACGAGCCACTATCAGTATTGGCGGCCGCTAAAAAGCTAAATCCTAGTAAATATGAAATTTTCGATACAGAGATTGTGAAAGTTTCGAGTCGCAAAAAGAAGAAGAATAAGAGTTTGGAGACCATGCCTGCTATTACAATTAAGTTTAGTAAGAGAAGAGCAACAGATGTCAAAGTGGTAGAGAGGCCTACGGATGTCTGGTTATACTTTGTGCCAGGAAGGGAAGAATGGATTAAACACACCCAGTTTCACATGCCCTGGCCATGTTCTCAATGCTCTGAGACATATTCTACAGAATTCGAAGTGCGGAGGCACTTGAGTCTGGTCCACAACCTGGTTCACTGCCGCTTGTGCCACTTTAGAACAACCGACGATGAACAGTATGATAGTCACCTGTACCAAAAACACAATGTCACGAATGTGGCTAGTAAATATGCAGAACCGTTCTGGGAAATGCAAATGGTTGATGGCTGTGAAAAGTTTGTTTGTTTATTTTGTTCCAAAAGCAATAATTTGACTACAGCATTTTTTAGTCATTTCATGGGCTATCACCATTTTACACTTAAATGTATCACTGGTATTATATCAGGTACAGATCTGCCTTTCACAGTGGATGGTGCAAATATCACCTCTAATTTTATCGAAGGCCAGTTGAAAGATCAAACCAAGGTAGGTTATGTGGACTTGGACAAGAAGGTGGAACCTGGTGTTATTGAAACTGCTACAATGACTATAGTCCCAGAGGTGAAGCAAGAAATTCCTAGTGACGCTGAGGCCAATGAGCAAGAAGTGGATGCTGAAGAAAATACTCCTAAAAATGATTCTTATCGTTCATACAGAGGTGAAGAAGATTTTGATGTCACTCTGGTGGAATTAATTGTGTTACATGAATCTTACTTTGAATATGTTAATCGGACACTTAGTCACATGAACTCAAACACTTTAGCGGAAGAGGGTGGGCTTGATTTCAAGATCCTGAAGGACGATGTCAATGTAGATGTTGAGTGTACCCTATGTAAAACAAAAGTCAATACTGCCAATACTTTTATCACTCATATGGCTAAGATTCATTCAGTGAAGACTGTTCCTATTTATTCGTGCAGAGTATGTGCTACGTTATTTGACACTCGGAATGAGTTTGAAAGTCATGCATATGAGGAGATGGGGGAATTTGATGATTTGTGGCTTTGTCAGTTTTGTGATAAAGAGTTTGACAACAGAGAGAATACGAGGAAGCATTTGAATGAGCATTGGGAGGCTTTGGAGTATGACAATTGTTTCAGTCCACATCTAGGGTTTAAATGCAAATATTGTCCTACTTTGTTTTGGAATGAGATTGACAGAGAGACACATCAAGTACGAGTGCACTATGTCAATCACAAGAATGATTTCTATAAGTGCCATAGCTGCGCAGACGTATTTAGTGAGAAGATGTGGTTCATCCACCATTATTATGACAGACACCAGACAGAGAGCAATGAAGTAAAGTTCCTATACAAATGCATGGTGTGTAGCCTCACACTCCACACTATCGAGGAGATGAGGATCCACTTCAATGCGCTGCACCCTGAAGCGAGGAAGATCTTCTGCACCCTTGGGTCCTGTATGTACAGGCCACTGAGTCAGCGCAAGTCTTTCAAACTCCATGTCAAGTCATTCCACTCGAACGAGGGCCGCAGACCCAACGAGACCACAGCCAGCTGTACGATATGCGGGCGCGAGTTCACCAGCGCGCGGGCGTGCGGCGCGCACATGTCGCAAGCGCACGGCACCGGCAAGTTCAAGTGCAAGCTCTGTAGAGAGATCATGAACACCATCGATGAGCGGAAACTCCACTACCTAATCCGGCACCCCGGGCGCCACCCGTTCGAGTGCACCGAGTGCGGCAAGTCGTTTCAGTACAAGTCCTCGCTGTATATGCACAAGCAGGAGCACTCGCCCAACAAACAGAGCTTCACCTGTACCTACTGCGGGAAGGTGTTTATGAAAAAAGACTCGTACCGCGAACACATCCAGATCCACGAGGGCCCGCGGCACGCGTGCTCGTACTGCCCGATGCGGTTCGTGCAGCGCTCGAACATGCTGCGCCACGAGCGCAGACACACCGGCGAGCGGCCCTACGCCTGCAGCCAGTGCCCGCGCACCTTCGCCGACAAGGGCGCCTGCACCTCGCACCTGCGAACTCACTCGAAAGACAGATCTTACGCCTGCATATATTGTGGACAGACATTTGTGCAAAAGTCTAAACTGACTTATCATATCAGAAAACATACTGGGGAAAATTTGGAAACGTGCACGGTATGTTCAAAACTGTTCACCAGCGCGTGTTCGCTGCGAGAACACATGCGGACCCACGAGCGTCCGTCGACGGAAGCAGTCCAGTGTCCTTTGTGTGATCGCAAGTACCAGAACCCCCGGTACATGCTGCGTCACCTGCGCACGCTCCACAACCAGGAGCGGTTCGCGTGCCCGCTGTGCCGCAAGTCGCTCACCAGCGTGGCGGGCCTGCGCCACCACGTCGTCACGCACGGGAGGGCTAACATGTACAAGTGCAAAGTGTGCCCTAAAACGTACGCCGTAAGGAGAACCCTGATGAAGCACCTCCGCAAACGCCACAGCATCAAGACCTCCGACCTCAACGTGAAGGACTACTTCCACAGACTCGACCCTCGCGAATGCAACCTGCCCTTAGACGAGGAAACCATGACGAAGATATTCGGCCCACCGCCGAAGAAAGCCAATACGGACATTCTTTTGGGTGACTTCGTGACGTTTACAAAGACAATTGCTGCTAATTTGGCAAAGGTGAAAGAGGACTCGGAGGAAGAAGAGGAGGATGAAGAACAAGAGAAAGAGAGCGAGGAGGAGAGTGACAGGGAAAAGGTAAAGAACTGA
Protein Sequence: MSSDESDDEPLSVLAAAKKLNPSKYEIFDTEIVKVSSRKKKKNKSLETMPAITIKFSKRRATDVKVVERPTDVWLYFVPGREEWIKHTQFHMPWPCSQCSETYSTEFEVRRHLSLVHNLVHCRLCHFRTTDDEQYDSHLYQKHNVTNVASKYAEPFWEMQMVDGCEKFVCLFCSKSNNLTTAFFSHFMGYHHFTLKCITGIISGTDLPFTVDGANITSNFIEGQLKDQTKVGYVDLDKKVEPGVIETATMTIVPEVKQEIPSDAEANEQEVDAEENTPKNDSYRSYRGEEDFDVTLVELIVLHESYFEYVNRTLSHMNSNTLAEEGGLDFKILKDDVNVDVECTLCKTKVNTANTFITHMAKIHSVKTVPIYSCRVCATLFDTRNEFESHAYEEMGEFDDLWLCQFCDKEFDNRENTRKHLNEHWEALEYDNCFSPHLGFKCKYCPTLFWNEIDRETHQVRVHYVNHKNDFYKCHSCADVFSEKMWFIHHYYDRHQTESNEVKFLYKCMVCSLTLHTIEEMRIHFNALHPEARKIFCTLGSCMYRPLSQRKSFKLHVKSFHSNEGRRPNETTASCTICGREFTSARACGAHMSQAHGTGKFKCKLCREIMNTIDERKLHYLIRHPGRHPFECTECGKSFQYKSSLYMHKQEHSPNKQSFTCTYCGKVFMKKDSYREHIQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACSQCPRTFADKGACTSHLRTHSKDRSYACIYCGQTFVQKSKLTYHIRKHTGENLETCTVCSKLFTSACSLREHMRTHERPSTEAVQCPLCDRKYQNPRYMLRHLRTLHNQERFACPLCRKSLTSVAGLRHHVVTHGRANMYKCKVCPKTYAVRRTLMKHLRKRHSIKTSDLNVKDYFHRLDPRECNLPLDEETMTKIFGPPPKKANTDILLGDFVTFTKTIAANLAKVKEDSEEEEEDEEQEKESEEESDREKVKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -