Cmed072930.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- Chr31:2918602-2991068[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.02 1.3 9.4 0.5 1 23 323 346 323 346 0.96 2 13 0.06 3.9 7.9 0.0 3 23 372 393 370 393 0.95 3 13 0.056 3.7 8.0 0.1 1 23 417 439 417 439 0.96 4 13 0.00043 0.028 14.7 0.2 1 23 443 465 443 465 0.98 5 13 0.0006 0.039 14.2 0.5 1 23 470 493 470 493 0.95 6 13 0.0049 0.32 11.4 0.4 2 23 500 522 500 522 0.93 7 13 0.019 1.3 9.5 6.3 1 23 529 552 529 552 0.96 8 13 3.4e-05 0.0022 18.2 4.9 2 23 559 580 558 580 0.97 9 13 0.041 2.7 8.5 0.4 1 23 655 678 655 678 0.96 10 13 0.018 1.2 9.6 0.3 2 23 704 725 703 725 0.96 11 13 0.0054 0.35 11.2 0.9 1 23 747 769 747 769 0.98 12 13 1.9e-05 0.0013 18.9 0.4 1 23 773 795 773 795 0.99 13 13 5.3e-05 0.0035 17.6 0.4 1 23 800 823 800 823 0.96
Sequence Information
- Coding Sequence
- ATGGCTAAAACAACGGACTGGAGGCCGGGCCCGACGGTGTGTCGTTGTTGTTTGTCGGAAGGGTGTTACAAAGACATATCTACGGAATACTTCTGGATGGGGAAGAGAGAAGTTTACCAAGAGATGTTGTCGGAGACTTTCACCCTCTCTATCGCATACTCCCAGTCAAACGGGCCCAACAGTCACAGCCGGCTTATCTGCGAGCCATGCATCTCCAGGCTACGGGATGCGTCCGAGTTCAAGCGCCAGGTGCTGGAGTGCGAGAAGACTTTCATGTCGTACCTGGACCCTGGCAGCTCGGTGGCTGAAACAACTGACTCTGAAGTTCCCGCTGAACCGATGGAAACAGAAGTGAAGGTGGAACGTGTGAAAGAGGAGAAGCCGGTGAGCGACGACGACTTCGACGACCGGGGGGCCGACTTCCACGAGGACCAGGATGACGACGACGACGATATGGACGACCAACCCCTGACAAGGCTAGCGAGCAAAGTTCCCAAAAAGGAGTCGGTCGACATCATGGAGCTCCTAGACACCTCGAAACCTGGATCAAAGCGCAAATCCAGCAGTAAGGCTAAAACGGCTGCTGTTAAGAAGACTAAAAGTAAGAAGGAAGCCAAAGCAACCTGCAGCAAAGCGCCCAAACCAGAGAAGAAGAAAAAAGGAGCCGGCCAGGCAATTATACCGGCCCAGAGGAGGATCGTGCCTCTCTTTCAAGTGGCGTACGACCGCTCCTTGTGTAAGCCTCTGGGGACGATAACAGACTTCACAAAGCTCAGGCTCAGACCGAAAATAACGACTGCCGTTGCGAAAATGTACTCGCCGTCTCGCAGTCCATCGCCTATATCCATGGGTGGCAGGTCGCCGTCTCCAATTGAAGTAGCATGCTCCGGAAATAACCGTCATCCCACCTCCGAAACCGAAGCCAAAGAACCCAGACTATATCCCTTCATCTACGGAAACAACAAGTTCAAATGCTTCATCTGTTCTCAACCGTTCTTAGAAACCAGTTTATTAAGAGTCCATATGAACGAATCTCACACATTTGCCCCTCTAAAAAGATTAGTCAACAATAGACGAGAAAATATTCTCAAGGTAGACGTCAGCGAGGTGATATGCAAAATTTGTTCCATGCCAATACCCAGTTTGGCAGATCTGAAGACGCACCTCAAATTGGAGCATAACAAACCAATAGACCCAGAATTGAAGGATAACCTCATACCGTTCAAGTTAGAAGCTACAGACGGCAGCTACAAATGCGTTATTTGTAATGAAAATTTTATTAAAGTACGGATTTTGGTTATACACATGAGCGTGCATTTCAATAACTACAGCTGCGAGGTCTGCGGCTCAGGATTCATGACTTTAAGGCTTCTGAAGAAGCATTTGGAAGTGCACGAGAGCGGGAACTTCGCTTGTGACAGGTGCAGCAAAGTCTTCAGCACAGCGTACAAGCGTACTCTTCATATAAGGGGCGTGCATATGAAGCAATACCCTCGTCGGTGTCCGATGTGTCCGGAGAGGTTCAACTCGAATTATAAGAGGACGATACACCTGCAAGATGTTCACAATCAGTCGACTCGCGTGCATAAGTGCGAGACTTGCGGGCGTGCCTTCAATTTGAAGTATCATCTTATCTGTCACACTCGTTCTGTGCATCTTCAGGAGAGGAACCAACAGTGTGACATTTGCCATCAAAGGTTCTGTAATAAGGAAACTCTTAAGAGGCATATGGTGGTGCATACGGGGGAGAAAAATTATAAGTGCGAGGAGCCTATTTCTCTAGAAGAATGGAGTAAGGAGACGCAAAGTGAAGTCACGTATAACGTAAAGACTGTCCAAGGTTCTTACGTTAAAAGACCTACTAGGAAATCTAAAGCGCTAGAATTTGAAGCGTGGAAAAGTCAAGCTCTCGTTATATTCGAAAATTCCAATGCATACCCTTTCGTACATTCCGGCAACAAATATAAATGCTTTGTCTGTGCAAAGCCTTTCTTAGATCCAAATATGTTGAAAGAGCATACGACTAAAGATCACAGTTTAAGAGACTTACAAAAGGAGTTAAATAACAGGATGCGAGAGAAGAATTTGAAAGTAGATATAACACAGTTACAGTGCAAAATATGTCTCAATACTTTAACAGACTTGGAAACACTTAAAGTTCATCTAAAAGAGCATGGCAAAGATGTGGACTTGAACTTGAAAGACAATTTGATTCCTTTTAAATTGGGGGGAGACACTTTTGAGTGCCAAGTATGTGGAGAACACTTCTTAAAACTAAGACTGCTCATAATCCATATGAGCAAACATTTCAATAACTACAGCTGTGAAGTGTGCGGTTCTGTGTTCATATCTATGAACTTATTGAAGCGACATCAACAGACTCACGTGTTAGGAAACTTTCCATGCGACAAATGTGATAAAGTTTTCAGTAACACCGCCAAGAGAACTCTTCATATGCGCGGTGTTCATTTGAAAACAACTGCCGAGACGCTGTCCAATATGTCCGGAGAGGTTTAA
- Protein Sequence
- MAKTTDWRPGPTVCRCCLSEGCYKDISTEYFWMGKREVYQEMLSETFTLSIAYSQSNGPNSHSRLICEPCISRLRDASEFKRQVLECEKTFMSYLDPGSSVAETTDSEVPAEPMETEVKVERVKEEKPVSDDDFDDRGADFHEDQDDDDDDMDDQPLTRLASKVPKKESVDIMELLDTSKPGSKRKSSSKAKTAAVKKTKSKKEAKATCSKAPKPEKKKKGAGQAIIPAQRRIVPLFQVAYDRSLCKPLGTITDFTKLRLRPKITTAVAKMYSPSRSPSPISMGGRSPSPIEVACSGNNRHPTSETEAKEPRLYPFIYGNNKFKCFICSQPFLETSLLRVHMNESHTFAPLKRLVNNRRENILKVDVSEVICKICSMPIPSLADLKTHLKLEHNKPIDPELKDNLIPFKLEATDGSYKCVICNENFIKVRILVIHMSVHFNNYSCEVCGSGFMTLRLLKKHLEVHESGNFACDRCSKVFSTAYKRTLHIRGVHMKQYPRRCPMCPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRAFNLKYHLICHTRSVHLQERNQQCDICHQRFCNKETLKRHMVVHTGEKNYKCEEPISLEEWSKETQSEVTYNVKTVQGSYVKRPTRKSKALEFEAWKSQALVIFENSNAYPFVHSGNKYKCFVCAKPFLDPNMLKEHTTKDHSLRDLQKELNNRMREKNLKVDITQLQCKICLNTLTDLETLKVHLKEHGKDVDLNLKDNLIPFKLGGDTFECQVCGEHFLKLRLLIIHMSKHFNNYSCEVCGSVFISMNLLKRHQQTHVLGNFPCDKCDKVFSNTAKRTLHMRGVHLKTTAETLSNMSGEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -