Cmed132370.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- ZNF212_1
- Assembly
- GCA_014851415.1
- Location
- Chr17:5878087-5894516[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.11 7.2 7.1 0.3 1 12 177 188 177 197 0.83 2 13 4.8e-05 0.0032 17.7 1.5 1 23 354 376 354 376 0.98 3 13 1.2e-05 0.00078 19.6 0.6 1 23 396 418 396 418 0.99 4 13 0.54 35 4.9 0.2 1 23 443 464 443 464 0.80 5 13 0.0002 0.013 15.8 0.3 2 23 470 491 469 491 0.96 6 13 0.0006 0.039 14.2 2.3 1 23 507 529 507 529 0.98 7 13 1.1 70 4.0 6.6 1 12 535 546 535 561 0.80 8 13 6.9e-06 0.00045 20.3 0.4 1 23 567 589 567 589 0.98 9 13 0.00091 0.06 13.7 0.9 1 23 593 615 593 615 0.95 10 13 0.0015 0.097 13.0 0.1 1 23 623 646 623 646 0.96 11 13 6.9e-06 0.00045 20.3 0.4 1 23 681 703 681 703 0.98 12 13 0.00091 0.06 13.7 0.9 1 23 707 729 707 729 0.95 13 13 0.0015 0.097 13.0 0.1 1 23 737 760 737 760 0.96
Sequence Information
- Coding Sequence
- ATGGCGGCTGAACAGGATATTTGCGATGTTGCCATGCGATTTAAAGATATGTTTCCCAAAATGAACAAGTGGTCTTCATTAGCTCATTTAATAGAACACTTGAACCTTGATGAATGCCAGCCTGAGTATATAATTGAAACCCTAGATGAAGATAACGACGATTCTATCGACAATTCAATAACACATATCGAACACAGTGATGATGTTACAGAGAAAATCACTAAAACTGAATATGACCTACCTGAATCATCTAATAGTCAGGAGATGATGAATGAGGAAAATGTATTAAATGATGGCAAAATGTACATGACGTTGCTTGACGAAAAGACAAAGGCATGCCTGGAGACCCAGGAGCTGAATTTGTGTTTATTACCTGAAGAGGGGGCGCAGCTAGGGCTTGAGAGTGCGGTAGTTACGAAACAGAATAATGATGGAACTATATCTTTGACAACAGTTAAAGATTTGAAATCAAAATCTGAAACGGTGATAGCTCCATCTGAAAGCGAAGTGATGGACACTGAAGAGTTTTACAGCTGTAATACCTGTGGTGTTTCCTTCTCATCCGTCATTGAACACATACAGAACTATCATAATGACCAGGAAGTGGTAGTAGAGGAGCCTGTTGAAGATGATGACAATAGATTTATTGATCCAAATATCCAATATGAAACTTTGCTTAATGAAGAATCTGGAGAAAAGCAAGAGCCAACTCGTCGAATGATCACCAGCAATGGGAACATAGTTGAAACAGCATTGGTCATAAAGAATGTTGAAACCATATCTGATGAATTTATAGTTCCAACAATGATGAAAGACACGCCAAAACCTGAAAAACAAAATAGCTTACAACCAATTAAGCGATTTGTTCAAATTGATGAATTCTGTGATAGTATTGTGAAGAATATAAAAGATGAAAAAGATGGTCCATATCACAAAGTTATAGTAAAGCAAGTCCAGACCCTTGGTGGCAACAAAGTTAAATCATACTATTGTATGTCTTGTAACATATATGTTACCAATTTAAAAGATTTTAAACTGCACCCATGCAAAATTCTAAAATTCCCTTGTCCACATTGTCCAGTTTCATATGAAAACTCCAAATCGTTATGTGGACATATGAAAGTACACAAACAAGCACAAAAAGCTGAAGAGGAAGCCTACCGAGTTGCCGAATTGCCTGCAACTTACGAATGTGGGATTTGTAACACAATATTTCCTACGAATAAATCATTGAAACTTCATAAAAGGATGCACGACCCAATAAAGGCACGTCCTATAGAACCTCCAGTGGAGACCTCAGACGGCGCGGAGGGCAGCTCGGACAAGTACCAGTGTACCATCTGCGAGAAGATGATCCCGAGCGACTACCGCGCCATACACCAGAACTCGCACAACTCAAACGAGCTCAACTGTGCTATTTGTAATAGGAAATTCCAATCCAGTGAATATCTGGAGATGCATATGAGTGTACATAATTTAGATAAGGTACCTGTGAATAAAACATATAAATCTCTTCCGTACAGCTGTTTATATTGTAACCGAAGGTTCGCGAGACCTCACGAAAAAGTCAAACACGAAAGAATACACACAGGCGAGAAGCCGCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTTCAAAGCGCACAGTGTGTACAACCACCACCTGTTGACGCACTCGGAGGTGCGCGCGTACAAGTGCCCGTTCTGCCCGAAGGCGTTCAAGACGTCCGTGCAGCTCGCCGGACACAAGAACTCGCACACCAAGCCCTTCCTCTGCACACATTGCAACAGGCCGTTCGCGTCTCTGTACGCGGTGCGCGTGCACACGGAGACGCACGCGCGGCAGAACAACCTCAAGTTCTCGTGCGCGCTGTGCGGCGCCAGCTACGCGCGCGCCTTCGCGCTCAAGGACCACGTCAAGCAGGTGCACCAGCAGGACATCGACAACCAACGACCTCACCATGGTAAGCTGCAGTTCAAAGCGCACAGTGTGTACAACCACCACCTGTTGACGCACTCGGAGGTGCGCGCGTACAAGTGCCCGTTCTGCCCGAAGGCGTTTAAGACGTCCGTGCAGCTCGCCGGACACAAGAACTCGCACACCAAGCCCTTCCTCTGCACACATTGCAACAGGCCGTTCGCGTCTCTGTACGCGGTGCGCGTGCACACGGAGACGCACGCGCGGCAGAACAACCTCAAGTTCTCGTGCGCGCTGTGCGGCGCCAGCTACGCGCGCGCCTTCGCGCTCAAGGACCACGTCAAGCAGGTGCACCAGCAGGACATCGACACCAACGACCTCACCATGATGACACCTTCAAAAGCCAAGAATGAATGGAAAGTAGCTGAGGATGTGGTGGAAGCCGAAGTGGAAACGGTCCAGACGCTCAACAGCAAGGATTTGTCACAAGAGATAACGGAACTGGAATTAGCATCGAACGAATTAATAATTCCGTGA
- Protein Sequence
- MAAEQDICDVAMRFKDMFPKMNKWSSLAHLIEHLNLDECQPEYIIETLDEDNDDSIDNSITHIEHSDDVTEKITKTEYDLPESSNSQEMMNEENVLNDGKMYMTLLDEKTKACLETQELNLCLLPEEGAQLGLESAVVTKQNNDGTISLTTVKDLKSKSETVIAPSESEVMDTEEFYSCNTCGVSFSSVIEHIQNYHNDQEVVVEEPVEDDDNRFIDPNIQYETLLNEESGEKQEPTRRMITSNGNIVETALVIKNVETISDEFIVPTMMKDTPKPEKQNSLQPIKRFVQIDEFCDSIVKNIKDEKDGPYHKVIVKQVQTLGGNKVKSYYCMSCNIYVTNLKDFKLHPCKILKFPCPHCPVSYENSKSLCGHMKVHKQAQKAEEEAYRVAELPATYECGICNTIFPTNKSLKLHKRMHDPIKARPIEPPVETSDGAEGSSDKYQCTICEKMIPSDYRAIHQNSHNSNELNCAICNRKFQSSEYLEMHMSVHNLDKVPVNKTYKSLPYSCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFLCTHCNRPFASLYAVRVHTETHARQNNLKFSCALCGASYARAFALKDHVKQVHQQDIDNQRPHHGKLQFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFLCTHCNRPFASLYAVRVHTETHARQNNLKFSCALCGASYARAFALKDHVKQVHQQDIDTNDLTMMTPSKAKNEWKVAEDVVEAEVETVQTLNSKDLSQEITELELASNELIIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -