Cmed063590.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- Chr24:7458802-7485120[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.72 47 4.6 1.0 3 17 64 78 63 79 0.89 2 12 0.00057 0.037 14.3 0.4 1 23 406 428 406 428 0.96 3 12 0.00017 0.011 16.0 0.8 1 23 442 464 442 464 0.98 4 12 3.8e-07 2.5e-05 24.3 0.5 1 23 470 492 470 492 0.99 5 12 4.6e-05 0.003 17.8 0.9 1 23 499 521 499 521 0.99 6 12 1.9e-05 0.0013 18.9 1.5 1 19 527 545 527 549 0.93 7 12 4.8e-07 3.1e-05 24.0 1.1 1 23 555 577 555 577 0.98 8 12 2.8e-05 0.0018 18.4 2.6 1 23 583 606 583 606 0.96 9 12 0.0004 0.026 14.8 4.8 1 23 612 635 612 635 0.95 10 12 0.0018 0.12 12.8 1.0 2 23 642 663 641 663 0.97 11 12 2.1e-05 0.0014 18.8 0.8 1 23 669 691 669 691 0.97 12 12 0.047 3 8.3 0.1 1 23 697 721 697 721 0.91
Sequence Information
- Coding Sequence
- ATGGACAGAAAGATGAGTCAGAACAAAGTCTGCTTTATATGCAATGTGACTATCGGGCCATCAGCTAGGAATCGGGTCAACATATTCACTGAAAATAACATCTTACAATCAGGCAAGAAACTCTGCGAGGTGATATCGGACGTAGTCGAGTCACCCATTCTAGAAGCATCTGCGAAGTCAAGTGAAATCTGCAAGAAGTGTCAGAAGTCTTGCACTGAATACGATGCCTTGAAAGCCAGGTTACAAGTGCTAAAAAATGAAATCACAGAAAACTACAAGAAGACAATTGAGCTCGACACCATCGTCAAAACCGTTAGTGTCCCCAAAACCCCCGTGAAGGAGGCCAAGAAGATAGTCTTGCCAGCGTCAAAGTTACAACCGTTGCCGGCCAACTATGTGATAGAGATGGGCAAGTTTGCGGGCAATAACATGGTGTTGCCAAAGATTGAGTCTACGGTGACGAAGAAAAATCCAGTGATGAGCTTCAACGTGAACTTGCCAAAAGAGTTCCTGTCGTCTGCCGTTATGAGTGAAAGTAATGATAGTTCGGTGAAGAAGGAAATAATAATTGGTGCTGATCTTGATGAGGATACGGAGAATAACGATGAACAGCCCATGGAAATTGATGAAGTTCATCATTCTTCGACGTGGGCCTCTTGCTGGAGGGAGACGGCGAGACGCAAGGCCAGCGCTAGAGACGAGAAGTACATACTCGACAAGCTGCAGATACTGGAGGACGATGATGATGATGATGATGCACATGCAATTGTTATGGGGGAAGATGAATCCGGGGCCACTTACATCCGGGTCAGCGACGGCAACTACGAGCTGCTGGCCGCAGACGCTAATGACAACGACAACGACAATACACAACATGGGAACGACTCTAACGACGAGTCCCAGATAGAACTACAGGTGTCCGGCGACGAAGAGACGGCCAATGCCATCATAGCCGCAGCGCAGGAACAAGGTGGTGCATTTATAAAAGTGGAATCCGGGGAAATGTACCGAGTGAAGTCAGTTCTGCAAAGCAAAACCGAGGATGATCTCGATGCTTCGATGCATCTTTCAAACATAGTTGAAGCTCTCAATGACGGGCAGTTCAAATGTATGCTCTGCGAAAAAAATAAAGATAATGACAACAACACGATATCTTACACGAGCGATGCGGATGCAATGATGGCGCATTTAAAGAAGTCGCATAGCGCGCGTTTGTACATCTGCCAAGTTTGTGGACACATGGTGCGCAGGAGGAGCGAGTATTCGGCTCATATAGAGGAACACGCCCAAAAGAACAAAGCAGTAGTAAACAAAACCAAACTCCACGAATGTCCCGTTTGCCTCAAGACGTACAACTCGAAGACGTTACTCGGCGAACACATGAACATGCATACTGGCACCAGGCCGTATACCTGTGCGGTTTGCAACAAGGCATTCGCTTCCAAATACACGCTGCAAGCGCACTTGAAGACTCACGAGGAGCGCCCCCGGCCATACAAGTGCAATTCATGTGGCAAAGCGTTCCTGACGCAGCAGAATCTCGCTCAACACGAGAAGACACATTCTGGCATCAAAGAGTTTGTCTGCAAGATTTGTGACAAAGCGTTCGCAACGCAACATAACCTAGAAGTACACTGCGTGGTGCATTCCGGGCGCAAGCCGTTCTACTGCGAGGTGTGCGGCAAGTGCTTCGCGCGGCGAGCTGAGGTTAAAGACCATATGCGCATACACACCGGCGAGCGGCCGTTCTCGTGCGACATCTGCCAGGCGACGTTCACGCAGCGCTCCAACCTGCACTCGCACAAGCGCGCCACGCACTTCGACGACAAGCGCTACCACTGCACGCATTGTCCTAAGAAGTTTAAGAGGCGCAGGTTATTAGACTACCACATAAAGGCGGCGCACACGGGCGAGCGGCCGCTGAAGTGCACCGCCTGCACTGCCACCTTCGTGTACCCCGAGCACTACAAGAAGCACGCCAGGATACACAGCGGCGAGCGGCCCTATGTCTGCGAGGTGTGCGGCAAGTCGTTCAACTCGCGCGACAACCGCAACATGCACCGCTTCGTGCACAGCGACAAGAAGCCCTACGAGTGCCTCGCGTGCGGCGCCGGGTACATGCGCAAGCAGCTGCTGTACCAGCACATGAACATCACGGGTCACGTCGCTGAGTCAATAGTGGTGAATCAACCGAAAGTGATAACTGCAGTAGAAAATATATTTGAAGCTACGTCGGAGTTAGAATTGGATGAAAATGATGGCGACACAGCTGGAACATTCATCAGTAAAATTAATTTTGATTGTATTCGTTACAGAAGACGATGGTGCTACAAATTATTCATCACAGACGCTGAGGAGAAGAAATTAATATTTCAAGACAAATCTGAAATAAACGTTTTACAAGATGGCGAAGAGTCTACATTTCTAACATTACATAATTTCAACGGATTAATAGAAGCTAATTTAAAAGAAGAAAAATTGAATGAACAAGCTCATATTGTCACGACTGCAACTGATGAAAAGGGAAACACGATGCGACTGATCCAAGCAAATTAG
- Protein Sequence
- MDRKMSQNKVCFICNVTIGPSARNRVNIFTENNILQSGKKLCEVISDVVESPILEASAKSSEICKKCQKSCTEYDALKARLQVLKNEITENYKKTIELDTIVKTVSVPKTPVKEAKKIVLPASKLQPLPANYVIEMGKFAGNNMVLPKIESTVTKKNPVMSFNVNLPKEFLSSAVMSESNDSSVKKEIIIGADLDEDTENNDEQPMEIDEVHHSSTWASCWRETARRKASARDEKYILDKLQILEDDDDDDDAHAIVMGEDESGATYIRVSDGNYELLAADANDNDNDNTQHGNDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVLQSKTEDDLDASMHLSNIVEALNDGQFKCMLCEKNKDNDNNTISYTSDADAMMAHLKKSHSARLYICQVCGHMVRRRSEYSAHIEEHAQKNKAVVNKTKLHECPVCLKTYNSKTLLGEHMNMHTGTRPYTCAVCNKAFASKYTLQAHLKTHEERPRPYKCNSCGKAFLTQQNLAQHEKTHSGIKEFVCKICDKAFATQHNLEVHCVVHSGRKPFYCEVCGKCFARRAEVKDHMRIHTGERPFSCDICQATFTQRSNLHSHKRATHFDDKRYHCTHCPKKFKRRRLLDYHIKAAHTGERPLKCTACTATFVYPEHYKKHARIHSGERPYVCEVCGKSFNSRDNRNMHRFVHSDKKPYECLACGAGYMRKQLLYQHMNITGHVAESIVVNQPKVITAVENIFEATSELELDENDGDTAGTFISKINFDCIRYRRRWCYKLFITDAEEKKLIFQDKSEINVLQDGEESTFLTLHNFNGLIEANLKEEKLNEQAHIVTTATDEKGNTMRLIQAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -