Basic Information

Insect: Cnaphalocrocis medinalis
Gene Symbol: -
Assembly: GCA_014851415.1
Location: ctg2252:305-23168[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00031 0.021 15.1 0.4 1 23 196 218 196 218 0.96

2 11 9.1e-05 0.006 16.8 0.8 1 23 232 254 232 254 0.98

3 11 2.1e-07 1.4e-05 25.1 0.5 1 23 260 282 260 282 0.99

4 11 2.5e-05 0.0016 18.6 0.9 1 23 289 311 289 311 0.99

5 11 1.1e-05 0.00069 19.8 1.5 1 19 317 335 317 339 0.93

6 11 2.6e-07 1.7e-05 24.8 1.1 1 23 345 367 345 367 0.98

7 11 1.5e-05 0.001 19.2 2.6 1 23 373 396 373 396 0.96

8 11 0.00022 0.014 15.6 4.8 1 23 402 425 402 425 0.95

9 11 0.00097 0.063 13.6 1.0 2 23 432 453 431 453 0.97

10 11 1.2e-05 0.00076 19.6 0.8 1 23 459 481 459 481 0.97

11 11 0.053 3.5 8.1 0.0 1 21 487 507 487 508 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00031	0.021	15.1	0.4	1	23	196	218	196	218	0.96
2	11	9.1e-05	0.006	16.8	0.8	1	23	232	254	232	254	0.98
3	11	2.1e-07	1.4e-05	25.1	0.5	1	23	260	282	260	282	0.99
4	11	2.5e-05	0.0016	18.6	0.9	1	23	289	311	289	311	0.99
5	11	1.1e-05	0.00069	19.8	1.5	1	19	317	335	317	339	0.93
6	11	2.6e-07	1.7e-05	24.8	1.1	1	23	345	367	345	367	0.98
7	11	1.5e-05	0.001	19.2	2.6	1	23	373	396	373	396	0.96
8	11	0.00022	0.014	15.6	4.8	1	23	402	425	402	425	0.95
9	11	0.00097	0.063	13.6	1.0	2	23	432	453	431	453	0.97
10	11	1.2e-05	0.00076	19.6	0.8	1	23	459	481	459	481	0.97
11	11	0.053	3.5	8.1	0.0	1	21	487	507	487	508	0.95

Sequence Information

Coding Sequence: ACAAGTTCATCATTCTTCGACGTGGGCCTCCTGCTGGAGGGAGACGGCGAGACGCAGGCCAGCGGTAGAGACGAGAAGTACATACTCGACAAGCTGCAGATACTGGAGGACGATGATGATGATGATGGACACGCAATAGTTATGGGGGAAGATGAATCCGGGGCCACGTACATCCGGGTCAGCGACGGCAACTACGAGCTGCTGGCCGCCGACGCCAATGACAACGACAACGACAATACTCAACATGGGAACGACTCTAACGACGAGTCCCAGATAGAACTACAAGTGTCCGGCGACGAAGAGACAGCCAACGCTATCATAGCCGCAGCGCAGGAACAAGGTGGTGCATTCATAAAAGTGGAATCCGGGGAAATGTATCGGGTGAAGTCAGTTCTGCAGAGCAAAACTGAGGATGATCTGGATGCTTCGATGCATCTTTCAAACATAGTTGAAGCTCTCAACGACGGCCAGTTCAAATGTATGCTCTGTGAAAAAAATAAAGATAATGACAACAACACGATATCCTACACGAGCGATGCGGATGCAATGATGGCGCATTTGAAAAAGTCGCACAGCGCGCGACTGTACATCTGCCAAGTTTGTGGCCATATGGTGCGAAGAAGGAGCGAGTATTCGGCTCATATAGAGGAACACGCCCAAAAGAACAAAGCAGTAGTAAACAAAACCAAACTCCACGAATGTCCCGTTTGCCTCAAGACGTACAACTCGAAGACGTTACTCGGCGAACACATGAACATGCATACTGGGACCAGGCCGTACACTTGTGCGGTCTGCAACAAGGCATTCGCTTCTAAGTACACGTTGCAGGCACACTTGAAGACTCACGAGGAGCGTCCGCGGCCATACAAGTGCAATTCGTGCGGCAAAGCGTTCCTGACGCAGCAGAATCTCGCTCAACACGAGAAGACACATTCTGGCATCAAGGAGTTTGTCTGCAAGATATGCGACAAAGCGTTCGCAACGCAACATAACCTAGAAGTGCACTGCGTGGTGCATTCTGGGCGCAAGCCGTTCTACTGCGAGGTGTGCGGCAAGTGCTTCGCGCGACGAGCAGAGGTCAAAGACCATATGCGCATACACACCGGCGAGCGTCCGTTCTCGTGCGACATCTGCCAGGCGACGTTCACGCAGCGCTCCAACCTGCACTCGCACAAGCGCGCCACGCACTTCGACGACAAGCGCTACCACTGCACGCACTGCCCCAAGAAGTTTAAGAGGCGCAGGTTATTAGACTACCACATAAAGGCGGCGCACACGGGCGAGCGGCCTTTGAAGTGCACCGCCTGCACCGCCACGTTCGTGTACCCCGAGCACTACAAGAAGCACGCCAGGATACACAGCGGCGAGCGGCCGTATGTCTGCGAGGTGTGCGGCAAGTCGTTCAACTCGCGCGACAACCGCAACATGCACCGCTTCGTGCACAGCGACAAGAAGCCCTACGAGTGCCTCGCGTGCGGCGCCGGGTACATGCGCAAGCAGCTGCTGTACCAGCACATGAACATCACG
Protein Sequence: TSSSFFDVGLLLEGDGETQASGRDEKYILDKLQILEDDDDDDGHAIVMGEDESGATYIRVSDGNYELLAADANDNDNDNTQHGNDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVLQSKTEDDLDASMHLSNIVEALNDGQFKCMLCEKNKDNDNNTISYTSDADAMMAHLKKSHSARLYICQVCGHMVRRRSEYSAHIEEHAQKNKAVVNKTKLHECPVCLKTYNSKTLLGEHMNMHTGTRPYTCAVCNKAFASKYTLQAHLKTHEERPRPYKCNSCGKAFLTQQNLAQHEKTHSGIKEFVCKICDKAFATQHNLEVHCVVHSGRKPFYCEVCGKCFARRAEVKDHMRIHTGERPFSCDICQATFTQRSNLHSHKRATHFDDKRYHCTHCPKKFKRRRLLDYHIKAAHTGERPLKCTACTATFVYPEHYKKHARIHSGERPYVCEVCGKSFNSRDNRNMHRFVHSDKKPYECLACGAGYMRKQLLYQHMNIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00347635;
90% Identity: iTF_00347635;
80% Identity: -