Cmed114520.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- Chr10:11127546-11135542[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.56 36 4.9 1.4 1 23 227 250 227 250 0.91 2 12 0.0031 0.2 12.0 3.1 1 23 257 279 257 279 0.95 3 12 2e-05 0.0013 18.9 1.5 2 23 286 307 285 307 0.96 4 12 4.6e-06 0.0003 20.9 0.2 1 23 313 335 313 335 0.97 5 12 0.00082 0.054 13.8 0.5 1 23 344 366 344 366 0.93 6 12 0.0029 0.19 12.1 0.2 2 23 373 394 372 394 0.94 7 12 0.00032 0.021 15.1 7.6 1 23 400 422 400 422 0.98 8 12 4.1e-08 2.7e-06 27.3 0.3 1 23 428 450 428 450 0.98 9 12 5.5e-07 3.6e-05 23.8 1.9 1 23 456 478 456 478 0.99 10 12 5.1e-05 0.0034 17.6 0.6 1 23 484 505 484 505 0.96 11 12 0.00059 0.039 14.2 0.6 1 23 511 533 511 533 0.96 12 12 2.2e-05 0.0014 18.8 4.3 1 23 539 561 539 561 0.98
Sequence Information
- Coding Sequence
- ATGGAATTTGATGCTACAATAGATTCATTAGAAATCAAACATGAAAACGTCAAAGAAGATATAGATGAGGAAGTCATTCTGCAGTCTGAAGTGCCAATGCATTTATTTCAATATCTTCCATTTAGTCTAAATGGTTCCAAATTGCAAAATGTATGTCGGATATGCCTCAATATTATTAAAGAGACGAAAATATCTCTACTTTCCGTTCACAATAACTATATGCTTAAAGACATGTTAAGACTGTTATCAGCTGTACAAGTTGGTGAGATGTATCCAGAAGAAGACCTACCTTCTAACATATGTGAATCTTGTCTATCTGATGTTATCTACTGTTATGAATTCAAAGTTAAATTTGAGAAGTCGCAGTCAATATTGCAATCACTCTTAAAGAATCAAATTACAAAAGAAGTCCCACTGGATACTGTTAAGAGTGAAGACGGCCAGCTGCTAATAGAAGATAATAGTGTCATTAAGGATGAAATAAAAGAAGAAATTATATTTGATATTGAGGAAGAGTACCTAGAAGATTTAAATGACTTATCAAGTGGTAATGAAGAACTATGTATAGTACAAAATCCAGATGACTGTCACTTAAAGCCAAATAAAAGCACAAGAGCAGCCGTTATCAATAATTTAAAATCAGTTCCACCATCTACAAAAAAAACATCTGACAAACCATATTCCTGTATCTTTTGTTCAAAGAAATTTGACAGCGTAAAACAAGTAAGAGCCCATGTTACAAAAAGACACAAAGCTAAGGAATATTCCCATCCATGTGATCAGTGTAAGGAGGTATTCAGCTCTGAACATGATCTCCATGTCCATTCTTCGGTTCACGCCACCGGCCCCTTATGGAATTGTAACAAATGTGAAAAAGTTTTTAAAGCACGGTCGAAGCTGAGCCGTCACATCCAGCGACACATGCAGTCTAAGCGGTTCGCATGCGACAGCTGCGACAAGGCTTTCTCGGAGCTGTACGCGCTGCGCCGCCACTTGCGCGTGCACACCGGCGAGATGCTCGAAAAGAAGTTCGCCTGCCAACTTTGTGACAAGAGGTTCATCGAGAACTGCCAGCTGACGGCGCACGCGGCGTGGCACCGCGGCGAGCGGCGCTGCGTGTGCGCGGCGTGCGGGAAGGCCTTCGCCTCGACGCGGCTGCTGGCCTCGCACCGCCTCGTGCACTCCGACCTCAAGCCCTACGCCTGCACCTACTGCGACAAACGGTTCCGGCACGAGTCGACGCGCAACACGCACCACCGCACGCACACGGGCGAGAAGCCGTACGTGTGCGCGGCGTGCGGCAAGACCTTCATACAGAACTCCAACCTCACGCTGCATATGCGCACGCACACCGGTGAGCGACCGTATTCTTGCGACAAGTGCGACCGGAAGTTTTCCACTGGTTCCTCGTTGAAGGCTCATCAGAGGCGCCACACCGGCGAGAAGCCGTACAGCTGCAACGTCTGCGGGAAAAGGTTCGCCCGGCGCGACCTGAGCGCGCACATGCGGCAGCACACGGGCGAGCGGCCGCACGCCTGCAGCGCCTGCCCCAAGCGCTTCGCCAGCGCCGCGCGCCTGCGCGAACACACGCGCATGCACACAGGCGAAAAACCATTCGAATGCGCAACATGTACACAAAAGTTCTCATCCAAATCGCATTTGGTGAAACACCTAAAGAAACATCAAGCTAAGAAAAAACGCGATAAGCGAGTTGTCATGGTTCAGCAGATGGACTACCGCGCGCCCGTGTTCAAATATGAAGACAAGTACATCATCACTGATGGTAAACAACTCCAAGTATCTGAACTGGAGAATAAAAATGATGATATCGAATGTGAAACCAAAGAGAGCAATATAACATTAGAAATAACACCTGAAGTCCCATTAGAAGTCACTAGAGAGTTGGTGGTCCAAGATGATTGTAATGTAAAAGAGATTCTGGTAGTAGATAATAGTCAAAATGATGCTAATTACCAAAGTGGGAACATTTGTATAAACACAGATGGTGTTAATTACGTGAACAGCGACGTTAATCTTGTGGCAGTGAATGAAGGTACCACAGTGTATCACTTGGATCAAAGTCTTGTGCAAATACATAGTTCAGGAGGACAGGTCACCATAAGCAAGATCACTAGTAAAATGACTGCTAATTTTTAG
- Protein Sequence
- MEFDATIDSLEIKHENVKEDIDEEVILQSEVPMHLFQYLPFSLNGSKLQNVCRICLNIIKETKISLLSVHNNYMLKDMLRLLSAVQVGEMYPEEDLPSNICESCLSDVIYCYEFKVKFEKSQSILQSLLKNQITKEVPLDTVKSEDGQLLIEDNSVIKDEIKEEIIFDIEEEYLEDLNDLSSGNEELCIVQNPDDCHLKPNKSTRAAVINNLKSVPPSTKKTSDKPYSCIFCSKKFDSVKQVRAHVTKRHKAKEYSHPCDQCKEVFSSEHDLHVHSSVHATGPLWNCNKCEKVFKARSKLSRHIQRHMQSKRFACDSCDKAFSELYALRRHLRVHTGEMLEKKFACQLCDKRFIENCQLTAHAAWHRGERRCVCAACGKAFASTRLLASHRLVHSDLKPYACTYCDKRFRHESTRNTHHRTHTGEKPYVCAACGKTFIQNSNLTLHMRTHTGERPYSCDKCDRKFSTGSSLKAHQRRHTGEKPYSCNVCGKRFARRDLSAHMRQHTGERPHACSACPKRFASAARLREHTRMHTGEKPFECATCTQKFSSKSHLVKHLKKHQAKKKRDKRVVMVQQMDYRAPVFKYEDKYIITDGKQLQVSELENKNDDIECETKESNITLEITPEVPLEVTRELVVQDDCNVKEILVVDNSQNDANYQSGNICINTDGVNYVNSDVNLVAVNEGTTVYHLDQSLVQIHSSGGQVTISKITSKMTANF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -