Cmed023610.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- Chr29:7646306-7651102[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0051 0.33 11.3 2.4 2 23 9 30 8 30 0.96 2 16 0.014 0.93 9.9 1.3 2 23 36 58 35 58 0.96 3 16 0.00025 0.017 15.4 2.1 1 23 63 86 63 86 0.91 4 16 2.2e-05 0.0014 18.8 0.1 1 23 122 144 122 144 0.98 5 16 1.5e-05 0.00098 19.3 2.5 1 23 150 172 150 172 0.98 6 16 0.00024 0.016 15.5 0.8 1 21 178 198 178 199 0.93 7 16 0.21 14 6.2 0.7 1 23 251 273 251 273 0.96 8 16 0.036 2.4 8.6 0.1 2 23 300 322 299 322 0.89 9 16 7.8e-05 0.0051 17.0 1.6 2 23 349 370 348 370 0.96 10 16 0.00012 0.0081 16.4 3.5 2 23 375 396 374 396 0.96 11 16 0.014 0.93 9.9 1.3 2 23 402 424 401 424 0.96 12 16 0.00056 0.037 14.3 2.5 1 23 429 452 429 452 0.91 13 16 0.00095 0.062 13.6 0.1 1 23 459 482 459 482 0.97 14 16 3.6e-05 0.0024 18.1 0.1 1 23 488 510 488 510 0.98 15 16 1.9e-05 0.0013 18.9 4.1 1 23 516 538 516 538 0.98 16 16 0.0034 0.22 11.9 1.6 1 21 544 564 544 565 0.93
Sequence Information
- Coding Sequence
- ATGTACGAGCATAGTACGTCGTCAATGTGCCACGTTTGTGGAAAGAAAATCGCATCCGAACATAGGCTACAGACTCATTTATTGATGCATAAGCGGACTCATATATACTGCAAGCATTGTTTTAAGGACTTCCCGACGGTTGCGGCTAGGAACTATCACATACGAAAGGAGCATAATGACGCTTCATACAAGTGCCCCGAATGTAAAGAAAGCTTTACCCAGTATGAGCATAGGTTGAAACATCTTGTAGAACAACATGAGTTGAAGAAGCCAGAGTTCAAATGCGATGTTCGTAACCGAGAATTAGCTAGTTCTGGGGGTTTAGCAGCGCACAAACGGTACAGCTATTTGAAAACTAAACAGTATACATGCGAAATTTGTGGGAAAGTGTTCGCGTACAAAGGGATATGGCAGCGTCATATGGACGTCCATACTGGGGTGAAGAGATACGAGTGTAAGTTCTGTAGCAAGAAGTTTGCTAAATCATACTCATTGCAGACACATGAGAGAATACATTTGGATGATAAGAGGCACGTGTGCACGGTTTGTAAGGCGGCGTTTGTTCACAAGAGCAGTCTGAAGAACCATGCCAAGTTAGAAAAAGCAAGAAAGAAAAACACGCCTAGAAGACTGCAAGAAACGAAGGCCCCGTCCCAGAGCATCGTCGACAACCGGTCTCTCCGGTCCAATATAACTTTAGTTCTTAAACACACCACAATCATCCCATTCAGACATATTAACAATAGCAAATTCGCTTGCTTGTACTGCGATGATGGCTTCTTACAGTTCCATGCATTAATGTCTCATATGGAAACACATAGAAATATAACAGAACATGAGATTCAGTCCACTTTAAAAACGCCTAGAGATTTGGTCAAAGCAGACATAAGTGAAATTTCTTGTAAAATCTGTTTTGAGAAGTTTGAAAGTCTAGAAAATGTCATAGAACATCTAGTCGAAAGTCATAAGAAGATTTACCATCAGAATTTAAAATTGAAACCCGCACATGGTATATTAGGTTTCGATTTGAGTTCTGATGAATTGAAATGTAATGTGTGTCAGAAAGATTTTCGATTTTTCAAGAATTTATCTGTTCATATGAACGAGCATAGTACGTCGTCAATGTGCCACGTTTGTGGAAAGAAATTCGTATCCGAACATAGGCTACAGACTCATTTATTGATGCATAAGCGGACTCATATATACTGCAAGCATTGTTTTAAGGACTTCCCGACGGTTGCGGCTAGGAACTATCACATACGAAAGGAGCATAATGACGCTCCATATAAGTGCCCCGAATGTAAAGAAAGCTTTACCCAGTATCAGCATAGGTTGAAACATCTTGTAGAACAACATGAGTTGAAGAAGCCAGAGTTCAAATGCGATGTTTGTAACCGAGAATTAGCTAGTTCTGGGGGTTTAGCAGCGCACAAACGGTACAGCCATTTGAAAACTACACAGTATACATGCGAAATTTGTGGGAAAGTCTTCGCGTACAAATGGATATGGCAGCGTCATATGGACGTCCATACTGGGGTGAAGAGATACGAGTGTAAGTTCTGTAGCAAGAAGTTTGCTCATTCATACTCATTGCAGACACATGAGAGAATACATTTGGATGATAAGAGGCACGTGTGCACGGTTTGTAAGGCGGCGTTTGTTCAGAAGTGCAGTCTGAAGAACCATGCCAAGAATAATAGTAATAAAAGATAA
- Protein Sequence
- MYEHSTSSMCHVCGKKIASEHRLQTHLLMHKRTHIYCKHCFKDFPTVAARNYHIRKEHNDASYKCPECKESFTQYEHRLKHLVEQHELKKPEFKCDVRNRELASSGGLAAHKRYSYLKTKQYTCEICGKVFAYKGIWQRHMDVHTGVKRYECKFCSKKFAKSYSLQTHERIHLDDKRHVCTVCKAAFVHKSSLKNHAKLEKARKKNTPRRLQETKAPSQSIVDNRSLRSNITLVLKHTTIIPFRHINNSKFACLYCDDGFLQFHALMSHMETHRNITEHEIQSTLKTPRDLVKADISEISCKICFEKFESLENVIEHLVESHKKIYHQNLKLKPAHGILGFDLSSDELKCNVCQKDFRFFKNLSVHMNEHSTSSMCHVCGKKFVSEHRLQTHLLMHKRTHIYCKHCFKDFPTVAARNYHIRKEHNDAPYKCPECKESFTQYQHRLKHLVEQHELKKPEFKCDVCNRELASSGGLAAHKRYSHLKTTQYTCEICGKVFAYKWIWQRHMDVHTGVKRYECKFCSKKFAHSYSLQTHERIHLDDKRHVCTVCKAAFVQKCSLKNHAKNNSNKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -