Cmed062360.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- Chr16:2441365-2447568[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.07 4.6 7.7 0.7 1 20 152 171 152 174 0.89 2 14 0.00041 0.027 14.8 0.1 1 23 191 213 191 213 0.93 3 14 4.3 2.8e+02 2.1 1.7 5 23 221 240 218 240 0.92 4 14 0.0011 0.069 13.5 3.6 1 23 360 382 360 382 0.97 5 14 2.1e-06 0.00014 22.0 1.4 1 23 388 410 388 410 0.98 6 14 4.5e-06 0.0003 20.9 0.3 1 23 416 438 416 438 0.97 7 14 1.3e-06 8.2e-05 22.7 0.4 1 23 444 466 444 466 0.99 8 14 0.00017 0.011 15.9 1.8 1 23 472 494 472 494 0.96 9 14 0.00035 0.023 15.0 1.4 1 23 500 523 500 523 0.92 10 14 4.5e-05 0.0029 17.8 1.4 1 23 529 551 529 551 0.98 11 14 0.00018 0.012 15.9 1.2 1 23 557 580 557 580 0.97 12 14 0.00017 0.011 16.0 0.2 1 23 586 609 586 609 0.95 13 14 7.8e-06 0.00051 20.2 2.6 1 23 615 638 615 639 0.97 14 14 0.039 2.6 8.5 0.1 2 20 643 661 642 663 0.94
Sequence Information
- Coding Sequence
- ATGTACGGACGAATAGCGGCTGACCGAAACATTGAAACTATTAGGTTAGGTTTGGAAACAAAGTCCTACAAAGCAAATAAGACAGTATGTACTAGTGAGAGCAAAAGAAGAACTATGGAGTTGAATGAGCTAGAAAATGATATTGAGATTAAATCTGATAATGAGAATGAAGAAATACAAAAAGAAATGCTTATCTTAAATGAAGAATATATGAAGCATATTAACTCAAAGAATGATGAAATAACAAAAGAATTATTAAATGACCAAAAGGAGGATGTTACCTGTAGTAACAATAATGAAGAAATAACAAAAGAATTACCCATCTCAGATAAACATAAGGATGATATTAACTCTATTAACGAGATTGAGGAAATACCAAAAAAACTAGTCATCTCAAATGAACAAATGGAACATATGAAATCTGTTAATGTGGTGTTGAACAAGATTAAATATTTCAATTGTAAAAAGTGCAGCCGTGTATTTTTGCGACTTCAAGATCTTCAACTACACTCTGTTGCTCATGCAGTTCCTCAGACATCTTCCAACGAATATGGACAATACGTCAAACGTTTTAAATGCGAAGAATGTGGCGCCAAATTTGTTCAAATCAGTACACTCGAAGAGCACGCAGTCCTGCACAGGCCCTTCCCGCACGTCTGCCACTGCGGCATCGGCTTCTACCTCAAAAAAGACCTCGGCAGCCATAAAAATCTGGTTCACTCGAATGAAATAAAAAAAGATATAGCCCATCTCACATTCCGCGAAAAAAGAGCCATAACGAATGAAATGTGGATACCCAAAACTTCTTACAAGGGACCCAAAATTAAAGCAACTCCTGTTGAGGACATAGACATTAAAAGTGACAATACTGACTCTATTAGTGACAATAGTGACTCGGAGGAAGAAATATTTAGTACCAGAGTGAGACCCAGGCTTAGAGCTCAGTTAGTAGTTAAAAGTAAAGGCAAACGTATAAAGAAACCCAAACGTTTACAGAAAAACAAAATACCAAGAGCAAAGCCCATGGTAACACCAAAAATCGAACCAGGAAATTACGTAAAAAACGAAGACAACACATATACCTGCTGCCTGTGCAAAAAGACCGTAAAAACCAAAGCTAGTATGCAAAAACATCAGTTGGCACATATCGGGTTTAGGCCATACAGTTGTACTTTTTGTGACAAAAAATTTACACAAAAAGGTGCTCTTGATTTGCATATACGAAGGCACAATGGCCTGAAACCGCATGCTTGCACGTACTGTGTCAAAGCATTTGTATCGGCAGCCGATTTAAGATTGCACATCAGAACACATACTGGTGAGAAACCATATGTTTGTTCATTTTGTACAAAGGCCTTCAGCGATCCATCGGCGTGGAATAGACATGAAAGGACTCACACGGGGTACAAACCATATGTGTGTCAGTATTGCCCTAAAACATTCAGTGACAAGAGTGGACATATAAGGCACGAAAAATGGCATTTAAATAAAAGGGATTTCGAGTGTAAAATTTGTTTGAAGCGGTTCCGTTCAAAGCATGAAGTAAAGACTCATGTAATAGCAGTTCACAATACCGTAAAAGCATATGAATGTGAGATCTGCAATAAAGCTTTTGCTTTAAAAACCTACCTTCATGTTCATTACAATAGTCACAGTCACATTAAGAAATTCAAATGTGATTATTGTGGTTTTGCATGCAAGTCAAAATCAGCTATAGAGAGTCATATAGAAAGCATGCACTTGAAAAGAAAACAGTTTAAATGTACTGAGTGTGGAGTGAAGTTCTCAGCCAAAAGGACACTGATTAGTCATGTAAACGCTGTTCACAAGCGTTTAGTTAAATACGAGTGCGACCAATGCGACAGGAAATTTCCTATCAAGAGTTATCTTACAAAACATATAATGACATTTCACCATGTAGGTGTTAAATGTGAAACGTGTAAGAAACCATTATCAAATGATGCTGACTTAGAGACACATAGAATTAACAGGTTGTATTCAATGCGATATCTGTGGTAA
- Protein Sequence
- MYGRIAADRNIETIRLGLETKSYKANKTVCTSESKRRTMELNELENDIEIKSDNENEEIQKEMLILNEEYMKHINSKNDEITKELLNDQKEDVTCSNNNEEITKELPISDKHKDDINSINEIEEIPKKLVISNEQMEHMKSVNVVLNKIKYFNCKKCSRVFLRLQDLQLHSVAHAVPQTSSNEYGQYVKRFKCEECGAKFVQISTLEEHAVLHRPFPHVCHCGIGFYLKKDLGSHKNLVHSNEIKKDIAHLTFREKRAITNEMWIPKTSYKGPKIKATPVEDIDIKSDNTDSISDNSDSEEEIFSTRVRPRLRAQLVVKSKGKRIKKPKRLQKNKIPRAKPMVTPKIEPGNYVKNEDNTYTCCLCKKTVKTKASMQKHQLAHIGFRPYSCTFCDKKFTQKGALDLHIRRHNGLKPHACTYCVKAFVSAADLRLHIRTHTGEKPYVCSFCTKAFSDPSAWNRHERTHTGYKPYVCQYCPKTFSDKSGHIRHEKWHLNKRDFECKICLKRFRSKHEVKTHVIAVHNTVKAYECEICNKAFALKTYLHVHYNSHSHIKKFKCDYCGFACKSKSAIESHIESMHLKRKQFKCTECGVKFSAKRTLISHVNAVHKRLVKYECDQCDRKFPIKSYLTKHIMTFHHVGVKCETCKKPLSNDADLETHRINRLYSMRYLW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -