Cmed116780.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- Chr4:2807813-2815713[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 1.6e-05 0.0011 19.2 1.8 1 23 163 185 163 185 0.99 2 28 0.0004 0.026 14.8 0.3 2 20 216 234 215 236 0.93 3 28 5.4e-05 0.0036 17.5 0.1 2 23 265 287 264 287 0.96 4 28 2.5 1.6e+02 2.9 0.1 2 21 306 325 305 326 0.86 5 28 0.0019 0.12 12.7 0.1 1 23 383 405 383 405 0.96 6 28 4.7e-05 0.0031 17.7 1.2 2 23 449 471 448 471 0.96 7 28 0.00013 0.0085 16.3 2.0 2 23 510 532 510 532 0.97 8 28 0.0016 0.11 12.9 1.6 1 23 582 605 582 605 0.96 9 28 0.0012 0.081 13.3 0.1 1 23 666 688 666 688 0.96 10 28 0.00016 0.011 16.0 1.7 2 23 700 721 699 721 0.96 11 28 0.022 1.4 9.3 1.1 2 23 733 754 732 754 0.96 12 28 0.0033 0.22 11.9 0.7 1 23 764 786 764 786 0.98 13 28 0.0072 0.47 10.8 6.6 1 23 815 837 815 837 0.97 14 28 0.00065 0.043 14.1 1.7 1 23 848 870 848 870 0.98 15 28 2e-05 0.0013 18.9 0.5 1 23 878 900 878 900 0.97 16 28 0.00042 0.028 14.7 0.4 2 23 920 942 919 942 0.97 17 28 0.65 42 4.7 0.2 1 23 960 982 960 982 0.90 18 28 0.067 4.4 7.8 2.4 1 23 989 1011 989 1011 0.97 19 28 0.00029 0.019 15.2 2.2 2 23 1022 1044 1021 1044 0.95 20 28 6 3.9e+02 1.7 4.4 2 23 1097 1119 1096 1119 0.94 21 28 0.0014 0.089 13.1 0.3 3 23 1136 1156 1134 1156 0.95 22 28 1.9 1.2e+02 3.2 4.1 5 23 1166 1184 1163 1184 0.94 23 28 0.0041 0.26 11.6 0.7 2 23 1195 1217 1194 1217 0.95 24 28 0.16 11 6.6 2.5 2 23 1234 1252 1234 1252 0.93 25 28 8.6 5.6e+02 1.2 2.0 2 23 1297 1318 1297 1318 0.90 26 28 0.15 9.6 6.7 0.4 2 23 1325 1346 1324 1346 0.93 27 28 0.00073 0.048 14.0 0.7 2 23 1357 1379 1356 1379 0.97 28 28 0.79 52 4.4 3.0 2 20 1417 1435 1416 1437 0.93
Sequence Information
- Coding Sequence
- ATGGCCCTCAAGTTGGGCAAATGCAGGCTGTGCCTGAAGCTTGGCGACTTTTACTCCATATTCACGCAGGACAATGCCGTGCAGCTCGCGGAAATGGTCATGGATTGCACCCAAGTGAAGATTTATGAGGGAGATGGCTTACCCGACAAGATATGTTCGGAGTGTATCCAGAAGCTGAGCAGTGCTTACATATTCAAGCAGCAGTGTGAGCGCGCAGACCAAGAGCTGCGGCGCAACTATGTACCGCCTCCAGCAAGGCGGCGTACCGGAGCCGCAAGCGCAGCCGCGAGAGCGTCGACAACGCCTCGCTCAGCGACCGCTCGCACGAGCTTCGCGCCCAGCTCCAAGCGCGTCTCCGAGCTAAGGACCTCGCAAAAGAAACGACGAGTCACCAACTACGAGGCGGACTCCGATTACGAGGAAGACAACAGCTTCTCGCAATACTCCGGCGGCACCGACTCCGACGAACCGCTCGTCACCAACAAATTCAAGTGCAAGGAATGTGACAAATCCTTCTCAACTATTAAGAGTCGAAGTGCTCATATGAAAGTTCACACCAAAAAAGACAACCTGGGTAAAAATGAGGTTGTCAACATTCCGAAACAAATCGTCAACGAGGATGCGACGGACGACGACGAAAAACTGTCGTGCGACAAATGCGGGAAAACTTTCAAGTTGAATATAATGCTGAAGCGGCACTACGATCTGTGCGGTATCCAGGCGGAGATCTCGCCGACGAAAGAGTTGATTATAGCCGTGCAGCCTATAGACGCGGTGGTAAAGAATAAAATCGAGTGTGATATTTGTACGGCCAAATTTAAGTCGGTAGAAAATCTGCAGAAGCACTTGCGGGTGGTCCACGCCGCGGCGATGAAGCAGGACCCGTCGCCTAAGAAGACCAACAAAGTTTCGGTGCCCTGTGTGTTCTGTCGCAAATCCTTCGACGACTACTACATCTACACGGCTCACTACAACAGTTGTAGTAAGAAGTGTGAGCTGAGTGGCATCGAGTGTCCCGTGGCGTCGTGTAAGAGGATGATCGGGAAAAGGGCAGCTTTCTTCGTGCATTTGAAGAACCTTCACTTCGAGCCGAAGGTGGCGAAGTCGGAGCCGGCGGAGGGCAAGAGCAAGAAGTCGTCGGAGTCGTTCGAGTGCCGCATGTGCAGCAAGTCGCTGCCGTCGCAGGAGCAGCTCATCACGCACCTCGCCGCGCACATGTCCAAGATCGACAACGCGCCGGACGACGTGGCTGATGACGATTCCAGAGCAAGCACCATACCCGATTCAGCCTCAGTGGGGTCAGATACGCAGTACGGCAATTCTCACGTTCAAATGGGTCCCTTAAAGTGCACCATGTGCGATAAAGGCTTTAAATATAAAAAGGCGCTCGAGACACACGTACAGAAAATGCACTCGGAGACGGAAATGTCGGTGAAGACCGAGCCGCCCGACAAGAGCCTGCTCAGCGAGGCGGAGCACCCGGGGGCCTCCGACACGGAGTCTAGTCAGGACGAGGGAGACGACAACACCTGTGATATCTGCGAGAAGCAGTTCTCCTACAAGCGGCTGCTCATCCAGCACAAGCGCACGAAGCACAACATGAGCTCGGGCACGAAGCGCGCGAAAATCAACCTCAAAGACTGCTCCGTCCGCTGCCTCATCTGCGACTTGGAGATGAAAGTGAGCGCGATAAACGAGCACAATCAGAAACATATATCGATCAACATCAAGCCGAGGAACGTGTACACTTGCGCGGAGTGCGGAGACAAGTTCAAGAGCTGCAGCACGCTGGCGAGCCACATCAAGTTCGTGCACCGGCTGAAGCAGCCGCGCGCGGCCAAGGCGCCGCGGGCGCTGGAGGGAGGCTCGGAGCTGGCGGATTTTTGTGAAGTCGTTGTGACGAAAGCGGAACCCCTGGACGTGATCCAGAGTCACAACGGCTTTGGTGAGGTTCCGGTCGAAGCGGCCGACGCGCCCGACGGCGCGCACGGCGGGTTCGCCTGCCCGCTCTGCGGCAAGACGATGGCCACGCTCATCTCGCTCAAGAGGCATGTCAACTGGCACCAGAATGTGGGCAACAACCTGGAGAAGAAGATTGAATGCTTCGTTTGTAATGAGACGTTCCGTTTCCAAGGGCACTACAAGCTGCACATGCGCGCGCACTACCGGGACCCGAACCTGGACCCGCGGCACCTCACGTGCCCCATCTGCCAGCGCCGCAGCAAACACTTGCGCGCGGCGCAGGCGCACATGAACTTCCACAAGCAGACGCGCTTCAAGAACAAGGACTACGAGTGCTCTATATGCAAGCGGGTCTTCCAGTACAGGAAGGTGTATCTCTCCCACATGGCCATCCACTTCAAGCGCGGCGAGAGCGTGCAGAACACGATCGTGGGCGACGCGCTGCCGCTCAACGCCGACAAGAGCATCTTCGACGGCACCCACACCTGCGCGCACTGCGGCAAGGTCTGCGACTCCGAGAACTCGCTCAAGCACCACGAGCGCTGGCACAAGTCCAAGTCCTCGCTGTACGGCGCGCGCCACGAGTGCGCCGTCTGCCGCCTCGTCTTCACCAACAAGCGCCGCCTCGAGATCCACACCCGGACCCACTACGAGGACGACAACGGCCCCTTCAAGTGCACCATCTGCGGCAAGGGCTACATCGACGAGGACTACTTCCGCCGACACGTCAAGGGACACAACTTCGACAACCAGGTCCACAAGGACCGCATAGCGAAGCTCAGAAAAGATAAAGTCAAGTGCCCCATATGCGCCCGCTTCTACCCCGACTTGATACATCTAATTCGCCACCTGAGGAGGACGCACCCGGAGAGCAAAATGATCAAAACTGACCCCGACGCCCCCCCGCCCAACTACTACTCCTGCAAACTCTGCGCCAAAGTGTTCCTCGACGTCCAGAGGCTCCAAAGGCACGAGGAGGCCCACATGAGAAAACCGTTCTTCTACAAATGCAAATTCTGCGGCAAGAACTCCGCATCGCTGAAGAACCATAACATTCACATCAAGGGGCACCTCACTCAGAAGTATTTGGACGACCCGCTGAAGTGCCCGCAGTGCGACGAGACGTTCGTGCGCGGCTACGACCTGCACCACCACCTGCGGGACACGCACCAAGTCCACGAGACCTGGATCGCCGAGCGCACGCAGCAGACCCTCGACGGGCCGCTCAAGGAGTTCCACACCCTCAAATTCCTCGAGGGCCATCTCGCCTTCAGCTGCGAGAAGAAAAAACTCATAGGCGACACCGAGATATATCCCAGAAAAATAAAATGCCAGGAGTGTTACAAGGCTTTCCATTTGCAAGTGAAGCTGGATTGCCACCTGCGCACGCGCCACGGAATACGCGTATGCAGGGAAGCCTCGTCGGGCAAGAGAGAGACGATCTGCGACTACTGCTTTAAAGTGTTCGAGAACGAGGAAGCTCTGAACTCGCACAAGTTGTATCACCGCACGATCGGCTACTACGGGTGCATATACTGTAAACGGAAATTCGGAACTCTGACCCTTTTCAGGAAACATAAGAACCATCATTTCTCTCAGCTGAACGTGGACAACCCCACGAAGTGCGAGCACTGCGACGAGACGTTCGTGCCCTTCCGCGAGATGATCTACCACATGCGCGACGTGCACGGCGACGACAAGGAGTGGCTGGTGCTGCCCAAGGGCTCCATCGAGGAGACGTGTCCGATATGCAAGAAGACGTTCTGGAACCTTCACAAACACCTGGAATACCATGAACAGAACAGATGCAAAAAATGCGCCGAGTACTTTTACTCCACGGTGGACTTCGACAACCATTTATGCCATATCGAAAGTGACGACGAAAACGAGCAAACCAATGAAAACAGTTTGATTCCCGCCTACGAGGAGTGTACTTTCTGCTTCAAACCCGTCACGACCAAGCATTCTAAAGCCCTGCATGAATCCCTCCACAAGGGTTCAGGGGCTATATCTTGCCGCTTTTGTCCGCTCAAATTCAAGACTATCGACGCGTTCAACATTCACGCGTTTTCGCACAGAAGCAGGAAATACAATAAGAGGCCGATAAAGTGTCGGCAGTGCGGGGAGAAGTTTGTGAAGTACGGACCGTTCATGAAGCACATGAAGACGGTGCACAAGTCGGCGAAGAAGATGCACTACCGCACGATGGTGAAGCCGGAGCGCTGCGTGGTCTGCGGCGACGACTTCCCCAACCTGCACAACCACTACCGCGCGCACATACAGAACCAGTGCCAGCAGTGCTTCAAGTACTTCACCTCCACCAAGGTCTTGAACAAACACGAGTGCGACAAAGAGGATTCCGATCCCTCCAAAGTGTTCGTCTCGGACGAGAATCTCTCTCATCTCATCAACACGTACGTTCCTAAGGATTTGAAAGACGATGAGAAGTTCTACGGCTACACTGACGAGGAGGACGAGGAGGACGTGACCGATATCGAGCCGCCGAAAGCCGCCGAACAAAAACCAAATATAGTACAAGACGACGATAGTCAAAGTCAAGCCGACGATAGACTTGATAGTGAATAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTQDNAVQLAEMVMDCTQVKIYEGDGLPDKICSECIQKLSSAYIFKQQCERADQELRRNYVPPPARRRTGAASAAARASTTPRSATARTSFAPSSKRVSELRTSQKKRRVTNYEADSDYEEDNSFSQYSGGTDSDEPLVTNKFKCKECDKSFSTIKSRSAHMKVHTKKDNLGKNEVVNIPKQIVNEDATDDDEKLSCDKCGKTFKLNIMLKRHYDLCGIQAEISPTKELIIAVQPIDAVVKNKIECDICTAKFKSVENLQKHLRVVHAAAMKQDPSPKKTNKVSVPCVFCRKSFDDYYIYTAHYNSCSKKCELSGIECPVASCKRMIGKRAAFFVHLKNLHFEPKVAKSEPAEGKSKKSSESFECRMCSKSLPSQEQLITHLAAHMSKIDNAPDDVADDDSRASTIPDSASVGSDTQYGNSHVQMGPLKCTMCDKGFKYKKALETHVQKMHSETEMSVKTEPPDKSLLSEAEHPGASDTESSQDEGDDNTCDICEKQFSYKRLLIQHKRTKHNMSSGTKRAKINLKDCSVRCLICDLEMKVSAINEHNQKHISINIKPRNVYTCAECGDKFKSCSTLASHIKFVHRLKQPRAAKAPRALEGGSELADFCEVVVTKAEPLDVIQSHNGFGEVPVEAADAPDGAHGGFACPLCGKTMATLISLKRHVNWHQNVGNNLEKKIECFVCNETFRFQGHYKLHMRAHYRDPNLDPRHLTCPICQRRSKHLRAAQAHMNFHKQTRFKNKDYECSICKRVFQYRKVYLSHMAIHFKRGESVQNTIVGDALPLNADKSIFDGTHTCAHCGKVCDSENSLKHHERWHKSKSSLYGARHECAVCRLVFTNKRRLEIHTRTHYEDDNGPFKCTICGKGYIDEDYFRRHVKGHNFDNQVHKDRIAKLRKDKVKCPICARFYPDLIHLIRHLRRTHPESKMIKTDPDAPPPNYYSCKLCAKVFLDVQRLQRHEEAHMRKPFFYKCKFCGKNSASLKNHNIHIKGHLTQKYLDDPLKCPQCDETFVRGYDLHHHLRDTHQVHETWIAERTQQTLDGPLKEFHTLKFLEGHLAFSCEKKKLIGDTEIYPRKIKCQECYKAFHLQVKLDCHLRTRHGIRVCREASSGKRETICDYCFKVFENEEALNSHKLYHRTIGYYGCIYCKRKFGTLTLFRKHKNHHFSQLNVDNPTKCEHCDETFVPFREMIYHMRDVHGDDKEWLVLPKGSIEETCPICKKTFWNLHKHLEYHEQNRCKKCAEYFYSTVDFDNHLCHIESDDENEQTNENSLIPAYEECTFCFKPVTTKHSKALHESLHKGSGAISCRFCPLKFKTIDAFNIHAFSHRSRKYNKRPIKCRQCGEKFVKYGPFMKHMKTVHKSAKKMHYRTMVKPERCVVCGDDFPNLHNHYRAHIQNQCQQCFKYFTSTKVLNKHECDKEDSDPSKVFVSDENLSHLINTYVPKDLKDDEKFYGYTDEEDEEDVTDIEPPKAAEQKPNIVQDDDSQSQADDRLDSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -