Cmed024200.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- Chr1:21515514-21519257[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4e-05 0.0026 17.9 4.2 2 23 54 76 53 76 0.92 2 11 6.6e-07 4.3e-05 23.5 2.0 3 23 85 106 84 106 0.95 3 11 1.4e-06 9.4e-05 22.5 0.1 2 23 113 135 112 135 0.94 4 11 0.00028 0.018 15.3 0.1 1 23 142 165 142 165 0.96 5 11 0.00054 0.035 14.4 0.0 3 23 172 193 171 193 0.95 6 11 3.6e-06 0.00024 21.2 2.3 2 23 208 230 207 230 0.95 7 11 3e-05 0.002 18.3 1.2 3 23 239 260 237 260 0.96 8 11 1.4e-06 9.1e-05 22.5 0.3 2 23 266 288 266 288 0.96 9 11 0.012 0.79 10.1 4.6 2 23 296 318 296 318 0.94 10 11 1.2e-06 7.8e-05 22.7 1.5 1 23 324 346 324 346 0.99 11 11 8.2e-06 0.00053 20.1 1.8 2 23 352 374 351 374 0.96
Sequence Information
- Coding Sequence
- ATGAAGCAGGTACACCCGCAGGGCGACGGTGCCGTGCCCCGAGTGCGGCAAGACTCAAGAATGCCATGCTTCTCCAGCGGCATTGAAGTGGGCGCACCCTTCCGACGGGTGGAGTACCGCTGCCAGAGCTCTGTCCACGCCGACGGAAGCGAAGAGATCCCCTGCGAGCACTGTGACAAGACATTCCCCAACAAGAAGAAGCTAAACAACCACATCTTCTACTGCCACCCGGAGCCCGAGCAGGACGCGCCCTGCGAGCACTGCGGGAAGGTGTTCAAGACTAAATACAGATTAAAGATACACATGAAGCAGGTACACCCGCAGGGCGAAGCGGTGCCGTGCCCCGAGTGCGGCAAGAACTTCAAGAACGCCATGCTTCTCCAGCGGCATGTGAAGTGGGCTCACCCCTTCGACGGGCTGGAGTACCGCTGCCAGGAGTGCGGGCGCACCCTCCCCTCTCTAGAAGGGTACAAGCGCCACGTAGCCTCGGTCCACGGCGAAGCCCGCGTGGCGTGCGGTCGCTGCCCCGCGACATTCAAGACTCCGGCCAGCCTGAGCCGCCACGCCGCCACCGTCCACGCAGGCAAGCAGCAGAAGAAGAGCACGAAAGTCGGCGAGCTGCCCTGCCAGCATTGTGAGAAGAGGTTCAGCACTAACTCTGCTCTCACATGGCACTATCAGAAATTTCACTCCGAAAACAAAATAGACTTGGCCTGCAAAATATGCAACAAAGAATTCAGCGACCACAACAGTGTAAAACGACACTTGGAAACCGTACACTCAGAAAAAACAGCCTCTTGTCCCATCTGCTATAAGATTTACAAGTCTCCGATGAATCTACAGAGACACATACGGATAACCCACGCCCCGCCTGAAGCCCAAAGAAGATGTGACATTTGCAACAAAACCTTTAAATGCTCAATGCATTTGAAGATACATAACAACGTAGTGCATTCCAATCATGGTGATTTCAAGTGTTCGATTTGTGATAAAGTGTTCGCTTCCAAAAAATATATGGCCAAACATGAAAAGACACATGACACGAAGAAGATACCGTGTATGATATGTAAAAAGATGTTTAAATCAAACCATGATGTGAAAAGGCATATACGGAGAGTGCATTTGAAGGATGGTGTGACGGAGGAAGTAGCCAAGACGAGGAGCGATGATGACACCGAACTGCACGAGCATATAATGGCATGTGGGAATGCTGGTGAGATGCTGCAGGTTAAAATGGAAGTTGAGAGTGATGATGATGATGATGATGATGAGTGA
- Protein Sequence
- MKQVHPQGDGAVPRVRQDSRMPCFSSGIEVGAPFRRVEYRCQSSVHADGSEEIPCEHCDKTFPNKKKLNNHIFYCHPEPEQDAPCEHCGKVFKTKYRLKIHMKQVHPQGEAVPCPECGKNFKNAMLLQRHVKWAHPFDGLEYRCQECGRTLPSLEGYKRHVASVHGEARVACGRCPATFKTPASLSRHAATVHAGKQQKKSTKVGELPCQHCEKRFSTNSALTWHYQKFHSENKIDLACKICNKEFSDHNSVKRHLETVHSEKTASCPICYKIYKSPMNLQRHIRITHAPPEAQRRCDICNKTFKCSMHLKIHNNVVHSNHGDFKCSICDKVFASKKYMAKHEKTHDTKKIPCMICKKMFKSNHDVKRHIRRVHLKDGVTEEVAKTRSDDDTELHEHIMACGNAGEMLQVKMEVESDDDDDDDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -