Cmed088650.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cnaphalocrocis medinalis
Gene Symbol
-
Assembly
GCA_014851415.1
Location
ctg1907:7498-23099[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00069 0.045 14.1 0.2 3 23 204 225 202 225 0.95
2 17 0.00036 0.023 14.9 0.2 1 21 229 249 229 250 0.95
3 17 0.00033 0.021 15.1 2.6 1 23 252 274 252 274 0.96
4 17 1.4e-05 0.00088 19.4 5.6 1 23 280 302 280 302 0.97
5 17 1.6e-06 0.0001 22.3 3.7 1 23 308 330 308 330 0.98
6 17 2.5e-07 1.6e-05 24.9 2.7 1 23 336 358 336 358 0.98
7 17 5.4e-07 3.5e-05 23.8 1.0 1 23 364 386 364 386 0.98
8 17 9e-08 5.9e-06 26.3 6.3 1 23 392 414 392 414 0.98
9 17 9.2e-08 6e-06 26.2 3.9 1 23 420 442 420 442 0.98
10 17 2.4e-06 0.00015 21.8 4.2 1 23 448 470 448 470 0.98
11 17 1.4e-05 0.00092 19.4 10.0 1 23 476 498 476 498 0.98
12 17 2.6e-06 0.00017 21.7 3.6 1 23 504 526 504 526 0.98
13 17 5.6e-07 3.7e-05 23.8 6.9 1 23 532 554 532 554 0.98
14 17 2.3e-06 0.00015 21.8 6.8 1 23 560 582 560 582 0.98
15 17 1.8e-07 1.2e-05 25.3 3.4 1 23 588 610 588 610 0.98
16 17 1.6e-07 1.1e-05 25.5 5.7 1 23 616 638 616 638 0.98
17 17 0.01 0.66 10.4 1.5 1 14 644 657 644 660 0.91

Sequence Information

Coding Sequence
ATGGATAAGTCAGACGTCTGCTCTTCTCTTTCTGTGGCCCGGCCAGAGTTCATACATTTTGTCTCACAGCATACAGATCTCGAGACGCAAGAGCAAGCATCAACAGTGACACACGTCAAGGACGAGCCTTCTGATGTGAAAGAGGAGACGGAGCTAGTAGAAAATTCTGAACAAGACGAAGACCTAGGTATCGGTACTTGGGAGGCTAAAATCAATATGATACTTCATGACCACAGCTACTGCAGGGACATTGATGATGAGGAAGCTGTGGACCCCGACAATGAGGCGCCGCCTAGCGACGATGAGGCTAACAACCCGCTAACAAGGACTGGTCTTATCAGTGAATGTCCGGAACACGTACAAAATGGAAGGACTGCCTCGACACAACGGACCCCGAACAACGCAGCAAATGAAGCCAACCAATCCATCTCTACTGAATGTGGAAGTGATGTCAAGCCCTTGCTGGACATCACTCCCTCGAGTGAACGCAGCACTGACGCGGAGCATTCAGATGCGACGCCTCAAAGCCGACAAGAAAACTGTTCCGAGTTGAATGCACAACTTGCTCCAAACGCGTCACCGAAACTTACTCCAAAATACGTTATGATTTGCGAGCAATGTGGAATAGCTTTCAAGTCTTTAAGATTATACGAAAATCATAGAAAAATAAGTCACGCTATGTCCTTCATATGTGATCATTGCAAAGAAGTATTTGATAACAGACCAAGTTTAATAGTTCACCTGAAAAATCAGTATCTATGCGAATACTGTAAAGCAGGGTTCACGCACAAACGCGTCTTGATAAAACATCTAAGAAAACATGAAGGGGAGAAATCACATCGATGCAGTCATTGCAACAAAGCTTTCTCCCTTAAAAGTAATTTAAAAACACACACGCTAATACACACCGGGGAAAAACCGTATCGCTGCAGTCATTGCAACAAAGCTTTCTCCCTTAAAAGTAATTTAAAAACACACACGCTAATACACACCGGGGAAAAACCGTATCGCTGCAGTCATTGCAATAAAGCTTTCTCGCAGAAAGCTAGTTTAAATACACACATGTTATTACACACCGGGGAAAAACCGTATCGCTGCAGTCAATGCAATGAAGCTTTCTCGCAAAAAATTAGTTTGAAAAAACACATGTTAATACACACTGGGGAACGACCGTATCGCTGCAGTCATTGCAACAAAGCTTTCTCCCGTAAAAGTCATTTAAAAACACACATGTTAATACACACCGGGGAAAAACCGTATCGCTGCAGTCATTGCAATAAAGCTTTCTCGCAGAAAAATAATTTAAAAACACACATGTTAATACACACCGGAGAAAAACCGCATCGCTGCAGTCATTGCAACAAAGCTTTCCCCCTTAAAAGTAATTTAAAAACACACATGTTAATACACACCGGGGAAAAACCGCATCGCTGCAGTCACTGCAACAAAGCTTTCTCCCATAAAGGTCATTTAAAAACACACATGTTATCACACACCGGGGAAAAACCGCATCGCTGCAGTCAATGCAACAAAGCTTTCTCGCTGAAAAATAATTTAAATAGACACATGTTATCACACACTGGGGAAAAACCGCATCGCTGCAGTCATTGCAACAAATCTTTCTCAAATAAAAGTTATTTAAAAACACACATGTTAATACACACCGGGGAAAAACCGCATCGCTGCAGTCATTGCAATGAAGCTTTTTCGCAGAAAAGTCATTTAAAAACACACATGCTAATACACACCGGGGAAAAACCGTATCGCTGCAGTCATTGCAATAAAGCTTTCTCGCTGAAAAGTAATTTAAAAACACACATGTTAATACACACCGGGGGAAACCCGCATCGCTGCAGTCATTGCAATAAAGCTTTCTCGCAGAAAAGTAATTTAAAAACACACATGTTAATACACACCGGGGGAAACCCGCATCGCTGCAGTCATTGCAATAAAGCTTTCTCGCAGAAAAGAAAACAAACAGCAGTTTTGACACATAAAGATTAA
Protein Sequence
MDKSDVCSSLSVARPEFIHFVSQHTDLETQEQASTVTHVKDEPSDVKEETELVENSEQDEDLGIGTWEAKINMILHDHSYCRDIDDEEAVDPDNEAPPSDDEANNPLTRTGLISECPEHVQNGRTASTQRTPNNAANEANQSISTECGSDVKPLLDITPSSERSTDAEHSDATPQSRQENCSELNAQLAPNASPKLTPKYVMICEQCGIAFKSLRLYENHRKISHAMSFICDHCKEVFDNRPSLIVHLKNQYLCEYCKAGFTHKRVLIKHLRKHEGEKSHRCSHCNKAFSLKSNLKTHTLIHTGEKPYRCSHCNKAFSLKSNLKTHTLIHTGEKPYRCSHCNKAFSQKASLNTHMLLHTGEKPYRCSQCNEAFSQKISLKKHMLIHTGERPYRCSHCNKAFSRKSHLKTHMLIHTGEKPYRCSHCNKAFSQKNNLKTHMLIHTGEKPHRCSHCNKAFPLKSNLKTHMLIHTGEKPHRCSHCNKAFSHKGHLKTHMLSHTGEKPHRCSQCNKAFSLKNNLNRHMLSHTGEKPHRCSHCNKSFSNKSYLKTHMLIHTGEKPHRCSHCNEAFSQKSHLKTHMLIHTGEKPYRCSHCNKAFSLKSNLKTHMLIHTGGNPHRCSHCNKAFSQKSNLKTHMLIHTGGNPHRCSHCNKAFSQKRKQTAVLTHKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-