Cmed088560.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- Chr30:2367130-2382873[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.11 2.9e+02 1.4 0.3 17 30 317 331 308 345 0.75 2 17 0.099 2.6e+02 1.6 1.9 17 38 374 396 363 397 0.72 3 17 0.0025 6.5 6.7 5.5 15 39 400 421 391 425 0.82 4 17 0.00054 1.4 8.8 0.8 17 35 430 450 422 452 0.83 5 17 0.0011 2.9 7.8 1.8 18 37 459 480 450 481 0.85 6 17 0.0013 3.4 7.6 3.1 15 36 484 507 476 508 0.75 7 17 5.3e-05 0.14 12.0 3.8 1 37 499 536 499 536 0.86 8 17 0.21 5.6e+02 0.5 0.6 14 29 539 554 537 568 0.77 9 17 0.002 5.2 7.0 3.4 4 39 558 589 555 596 0.81 10 17 0.005 13 5.7 3.7 17 37 598 620 585 620 0.81 11 17 0.005 13 5.7 3.2 7 36 617 642 611 648 0.70 12 17 0.0025 6.7 6.7 3.8 5 36 643 675 640 676 0.75 13 17 5.5e-05 0.15 12.0 3.5 18 39 683 701 675 708 0.91 14 17 0.0057 15 5.5 7.1 17 40 710 737 702 742 0.77 15 17 0.011 28 4.6 2.7 17 39 738 757 730 760 0.82 16 17 0.00062 1.6 8.6 6.2 2 39 752 785 751 795 0.90 17 17 0.0031 8.2 6.4 0.7 18 40 795 814 791 816 0.85
Sequence Information
- Coding Sequence
- ATGTCGGAGCTGGCGGCCTGCAGGATGTGTTTAGCGGTGGACGCGCGCATGTACACAATCGCCGGCACGCCGCTGCAACACGTCTACGAGAGAATAACCGATATACCGCTTCAGAATGGAGACAAAAGGCCTAAGAAAGTGTGCTACCTCTGCTGTCACTTGCTGAGGAAGAATCAAGTCTTCATGGAGAAGTCGGTGAAGGCTGACGAGCTTCTGCGACTAGTACTCGACAGAGGGATTGAGCTTACAGAGGAATATATAAGACTGATGGATAAGTCAGACGTCTGCTCTTCGCTTTCTGTGACCCGGCCAGAGTTCATAAACTTTGTCTCACAGAAGCAGCATACAGATCTCGAGACGCAAGAGCAAGCATCAACAGCGACACACGTCAAGGAGGAGCCTTCTGATGTGAAAGAGGAAACAGAGCTAGTAGAAAATTCTGAACAAGAAGAAGACCTAGGTATCGGTACTTGGAAGGCTGAAATCAATATGATGTTTCAAGACCACATTGATGATGAGGAAGCTGTGGACCCGGACAATGAGGCGCCGCCTAGCGACGATGAGGCTAACAAACCGCTAACAAGGACCAGTCCCAGTCTTATCAGTGAATGTCCGGAAAACGTACAAAATGGAAGGACTGTCTCGACACAACGGACCCCGAACAACGCAGCAAATGAAGCCAACCAATCCATCTCTACTGAATGTGGAAGTGATGTCAAGCCCTTGCTGGACATCACTCCCTCGAGTGAACGCAGCACTGACGCGGAGCATTCAGATGCGACGCCTCAAAGCCGACAAGAAAACTGTTCCGAGTTGAATGCACAACTTGCTCCAAACGCGTCACCGAAACTTACTCCAAAATACGTTATGATTTGCGAGCAATGTGGAATAGCTTTCAAGTCTTTAAGATTATACGAAAATCATAGAAAAATAAGTCACGCTATGTCCTTCATATGTGATCATTGCAAAGAAGTATTTGATAACAGACCAAGTTTAATAGTTCACGTGAGAACGCACATGTCAAACGACTATATGTTGCATCAAACAGCTCGTTATAGGAAAACTGCAGAGGGATTCTTGAATAAATCAAGTATTAAAAAACACACAGCGAAAAATCAGTATCTATGCGAATACTGTAAAGCAGGGTTCACGCACAAACGCGTCTTGATAAAACATCTAAGAAAACATGAAGGAGTGAAATCACATCGATGCAGTTATTGCAACAAAGCTTTCTCCTTTAAAAGTAATTTAAAAACACACATGCTAATACACACCGGGGAAAAACCGTATCGCTGCAGTCATTGCAACAAAGCTTTCTCGCAGAAAGCTAGTTTAAATACACACATGTTATTACACACCGGGGAAAAACCGCATCGCTGCAGTCATTGCAATAAAGCTTTCTCCCTTAAAAGTACTTTAAAAACACACACGCTAATACACACCGGGGAAAAACCGTATCGCTGCAGTCATTGCAACAAAGCTTTCTCCCTTAAAAGTAATTTAAAAACACACACGCTAATACACACCGGGGAAAAACCGTATCGCTGCAGTCATTGCAATAAAGCTTTCTCCCGTAAAAGTTATTTAAAAACACACACGCTAATACACACCGGGGAAAAATCGTATCGCTGCAGTCAATGCAATGAAGCTTTCTCGCAAAAAATTAGTTTGAAAAAACACATGTTAATACACACTGGGGAACGACCGTATCGCTGCAGTCATTGCAACAAAGCTTTCTCGCTGAAAGGTAATTTAAAAAAACACATGGTAATACACACCGGGGAACGACCGTATCGCTGCAGTCATTGCAATAAAACTTTCTCCCTTAACAGTGTTTTAAAAACACACACGCTAATACACACCGGGGAAAAACCGTATCGCTGCAGTCATTGCAATAAAGCTTTCTCGCAGAAAGGTCATTTAAAAAAACACATGGTAATACACACCGGGGAAAAACCGTATCGCTGCAGTCATTGCAATAAAGCTTTCTCGCAGAAAGGTCATTTAAAAACACACATGTTAATACACACCGGGGAACGACCGTATCGTTGCAGTCATTGCAACAAAGCTTTCTCCCGTAAAAGTAATTTAAAAACACACATGTTAATACACACCGGGGAAAAACCGTATCGATGCAGTCATTGCAATAAAGCTTTCTCGCTGAAAAATAATTTAAAAACACACCTGTTAATACACACCGGGGAAAAACCGCACCGCTGCAGTCATTGCAACAAATCTTTCTCAGATAGAAGTAGTTTAAAGAGTCACGTGAGAATACACACCGGGGAAAAACCGCATCGCTGCAGTCATTGCAATAAAGCTTTCTCCCTTAAAAGTCATTTAATGAGACACTTATTAATACACACCGGGGGAAAACCGCATCGCTGCAGTCATTGCAATAAAGCTTTCTCAGATCAAAGTAGTTTAAAGAGTCACGTGAGAATACACACCGGGGGTAAAACCGCACCGCTGCAGTCATTGCAACAAATCTTTCTCAGATAG
- Protein Sequence
- MSELAACRMCLAVDARMYTIAGTPLQHVYERITDIPLQNGDKRPKKVCYLCCHLLRKNQVFMEKSVKADELLRLVLDRGIELTEEYIRLMDKSDVCSSLSVTRPEFINFVSQKQHTDLETQEQASTATHVKEEPSDVKEETELVENSEQEEDLGIGTWKAEINMMFQDHIDDEEAVDPDNEAPPSDDEANKPLTRTSPSLISECPENVQNGRTVSTQRTPNNAANEANQSISTECGSDVKPLLDITPSSERSTDAEHSDATPQSRQENCSELNAQLAPNASPKLTPKYVMICEQCGIAFKSLRLYENHRKISHAMSFICDHCKEVFDNRPSLIVHVRTHMSNDYMLHQTARYRKTAEGFLNKSSIKKHTAKNQYLCEYCKAGFTHKRVLIKHLRKHEGVKSHRCSYCNKAFSFKSNLKTHMLIHTGEKPYRCSHCNKAFSQKASLNTHMLLHTGEKPHRCSHCNKAFSLKSTLKTHTLIHTGEKPYRCSHCNKAFSLKSNLKTHTLIHTGEKPYRCSHCNKAFSRKSYLKTHTLIHTGEKSYRCSQCNEAFSQKISLKKHMLIHTGERPYRCSHCNKAFSLKGNLKKHMVIHTGERPYRCSHCNKTFSLNSVLKTHTLIHTGEKPYRCSHCNKAFSQKGHLKKHMVIHTGEKPYRCSHCNKAFSQKGHLKTHMLIHTGERPYRCSHCNKAFSRKSNLKTHMLIHTGEKPYRCSHCNKAFSLKNNLKTHLLIHTGEKPHRCSHCNKSFSDRSSLKSHVRIHTGEKPHRCSHCNKAFSLKSHLMRHLLIHTGGKPHRCSHCNKAFSDQSSLKSHVRIHTGGKTAPLQSLQQIFLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00347624;
- 90% Identity
- iTF_00347624;
- 80% Identity
- iTF_00347624;