Cmed021420.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- Chr2:12266874-12314450[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-11 3.2e-08 33.0 0.0 1 41 17 57 17 60 0.92
Sequence Information
- Coding Sequence
- ATGCCTAACCAGTACGTACGGAAAGCAGCATCTGTTCGAGGTGCCTGGAGTGAAGAAGATTTGGTAAACGCTATGGAAGAAGTACAAAATGGAAGAATGAAGATTTATAGGGCCTCAATTATCTATAATATTCCAAGAAAAACACTAGAAAGAAGATTAAAACAAAATAACTGTACAAAGGGACCTATGGGACCGTCATCGACGTTTGGTACAAATAACGAAATAAGACTGAGCAAGCATATAAAAGATATGCAGTCAAGAGGATTTCCTTTGACTGTTGATGATTTAAGAACAATTGCATTCAAGTATGCTGTACAATTAGGTATTAAACACAGATTTAATATGACCTCTGAAAAGGCGGGCTATGATTGGGTGCAAATGTTTTTGAAAAGGAATCCCGATATTTCATTGAGGAAATCAGAAGGAGTGTCATATGCTAGAAACCAAGGGATGAATAAAGCTGATGTAGGCGCCTATTTTGAAAACCTTGAGAGGACCCTTAATGATAATGACCTTTTGAGTAAGCCTGGCCACATTTACAACATGGACGAGTCAGGGTTGCAATTAAATAATCGACCAGGTCATGTTTTGGCTGAAAAAGGTTCCAAAGCTGTAGCTATGTCAACCTCTACAGAAAAAGGGGAAACGATAACGCCGCTGGATGTTGCTGTTTTTAAGTCTCTTAAAACTTATTTCTATGAATCCTGTCGGTTGTGGATGAAGCAGCACCCTGGACGCCGCCTAACAAGACAACAATTTGGATTCTTATTAAACCAAGCCTGGGGAAAATCTGCGACAAATGGAAATGCCATATCAGGGTTTAGGGCAGCAGGAGTTTTCCCACTAAATCCAGGAGCTATTCCAGAGTACGCCTTTAGTGAGAAAGAAAACGGCGAACATGTACCGCAAGCCCAATCAGCTTCAGATCCACGCCCAAGTACATCCACTCAGATGCAGGACTTACCAACACCGACAAAAATCCTGAACGAAGTATCTCCACTGCCTGTAAAACTACACGAAGTTCGCAAACGAGCCAAACAAGTAAGCATTCTTTTGACATCTGAGGATCATATTAAAAACCGAAAAATGAAAGAAGATGAAAAGGAAAAGAAGGAAGAAAAGTCTAAAAAACAAAAAATAATAAAAACAGAAAAGACTGATAGACCTAAGCACAAAAAGACTGTTAAGAAACTGGGCGAAGAGCGCTACGCGCCACCGCCAACACCTATGCCGCGCCGGAGGACACCGGAGAACTCGGCTGAGGATGCCGCCGGACCGATTCATGGTGAATCACCCCCCGTCGGCACTCAACGGCCGAGAACCCGGACGGCCACGGAGCGCGACAGCTCCGCAGAGGAGGAAGAGGAGAAGCGGCTACGCTTCACTTCCCCTCTGCACCTGCTGGTGGAGACGTCCAGGACGCCCACCCCGCCCAACAACCCGCCCGTCACTATGACGGAATCAGATCAGGAAGAGTTTTGCGCCTTCCTGGCGCACCCCCGAACCCACTTGACGCCGACTCCGACGACGACTTCAACCACTGCGTCAACATCGTACGCGACGTTGGCGCATAACACAGGCGACCTCGACGATGTCTTTGTGGGCCCCCCTACTCTGCTGGCTGGCGATTTGAATGCAAAACACCCTATTTGGGGATCGCATACAATGTCGCCGGCCGGCAAGACATTGCACGAGGCCGCTGTCGCAAGAGATATCGAGATCCTTGGTCCCGATTCTCCCACCCACATCCCCACTAACCTGGCCCATAGGACGGACGTTGTCGATATTGTGCTACTCCAGAACGTCCAATGCCCGGCCACTGTCGAGGTTATCTATGACACCAATACCCAACACCTACCCATTCTCGTCACACTTGATCCCACCTGCCTAATTTCCCCCAGAGCGCCGGCCCCCAGGACCGATTGGTCCCTGTACTCGGACGCGCTTCGGGATGTGTCCCTCGGCGGCCCACTGTCCTCGAGGGAGGATGTGGAAGCTGCTGTGGCACACTTCACCAAGCGTCTGAACAGGGCCAATCAATGCTCTATTAAAACCATATGCGACTATCAAATTACAATAGGGCAATTAGACAAGGTCGGGATACTCGCATTGGCAAACGGCTGCGTCATCAAAGACGGCGGAATCACCTTATTATCGCACAAGGAATCGAGTCACGATATAAAGTTGAAACCTGATATTCTGCATATAGAAATACCTACCATTAATAACATTGTGAATGTGTCCCTGCCCATGCCATCATCTAATTATGAAACTGAAACCAGCCGAACCAATATTGAATGGGAGCTTAAGACCATCAAGGATAAAATCAGCGCAGTAAAAAATAGTACCAAGGAAGATTTAGAGGATGACATATATTATAACTACCATGACATCCACCACTACATCGCAATCTACATAATAGCGGCTGCAGGCTTAGCGGCGT
- Protein Sequence
- MPNQYVRKAASVRGAWSEEDLVNAMEEVQNGRMKIYRASIIYNIPRKTLERRLKQNNCTKGPMGPSSTFGTNNEIRLSKHIKDMQSRGFPLTVDDLRTIAFKYAVQLGIKHRFNMTSEKAGYDWVQMFLKRNPDISLRKSEGVSYARNQGMNKADVGAYFENLERTLNDNDLLSKPGHIYNMDESGLQLNNRPGHVLAEKGSKAVAMSTSTEKGETITPLDVAVFKSLKTYFYESCRLWMKQHPGRRLTRQQFGFLLNQAWGKSATNGNAISGFRAAGVFPLNPGAIPEYAFSEKENGEHVPQAQSASDPRPSTSTQMQDLPTPTKILNEVSPLPVKLHEVRKRAKQVSILLTSEDHIKNRKMKEDEKEKKEEKSKKQKIIKTEKTDRPKHKKTVKKLGEERYAPPPTPMPRRRTPENSAEDAAGPIHGESPPVGTQRPRTRTATERDSSAEEEEEKRLRFTSPLHLLVETSRTPTPPNNPPVTMTESDQEEFCAFLAHPRTHLTPTPTTTSTTASTSYATLAHNTGDLDDVFVGPPTLLAGDLNAKHPIWGSHTMSPAGKTLHEAAVARDIEILGPDSPTHIPTNLAHRTDVVDIVLLQNVQCPATVEVIYDTNTQHLPILVTLDPTCLISPRAPAPRTDWSLYSDALRDVSLGGPLSSREDVEAAVAHFTKRLNRANQCSIKTICDYQITIGQLDKVGILALANGCVIKDGGITLLSHKESSHDIKLKPDILHIEIPTINNIVNVSLPMPSSNYETETSRTNIEWELKTIKDKISAVKNSTKEDLEDDIYYNYHDIHHYIAIYIIAAAGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -