Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.7e-05 0.021 14.4 0.0 22 39 108 126 103 130 0.81

2 4 1.7e-11 1.3e-08 34.2 0.3 2 39 142 179 141 182 0.92

3 4 9.6e-16 7.6e-13 47.8 0.2 2 45 197 241 196 241 0.96

4 4 0.55 4.3e+02 0.5 0.0 1 11 248 258 248 260 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.7e-05	0.021	14.4	0.0	22	39	108	126	103	130	0.81
2	4	1.7e-11	1.3e-08	34.2	0.3	2	39	142	179	141	182	0.92
3	4	9.6e-16	7.6e-13	47.8	0.2	2	45	197	241	196	241	0.96
4	4	0.55	4.3e+02	0.5	0.0	1	11	248	258	248	260	0.91

Coding Sequence: ATGCCAGGGCACGGGGTGTCCCAAGTGAAGTGCGAGCCGCAGTCGGACGAGGAAGACAGCAATTCTCAGTACTCGCTCGGCTACTTCACCAATCAGCCGTCCATACTAGGGCATTGTGCAATTAAAATTGAAAATGGCATCCAACACGAGAAGAGCGATTCCACACACATCCTGCAACATCTCCAGACCGGGCTGGAAGAACTGGCACCGCCGGCGCCGGCGGGCCCCGCGGCCACGCCCGTGTGCATCAAGCAGGAACCCTCGGAAGCACCCGCTCTCACTCTCGAGAACCTCGAGCCTGCGTTGATGGCCAGTTCTACGGCTTCTGCCACATACGGCATCCCGTCCACGACGCTCTGGCAGCGCGCACACCGCCTCGGCATCGACACACCAAAAAAGGAGGGCGCCTCCAAGTCCTGGAGTGAGGCTGATCTGCGAGGGGCCCTGCACGCACTGAGGGCTGGCGCTATATCGGCAAATAAGGCTAGCAAGGCTTATGGCATCCCCAGCAGCACCCTTTACAAGATAGCTCGCCGCGAGGGCATCCGGCTGGCGGCTCCCTTCAACGCGGCGCCCACGGCCTGGCGCCGCGCCGACCTGGAGCGCGCGCTCGCCTCCATCCGCGCCGGCGCCGCTAGCGTGCAGCGCGCCGCCTCGCAGTACGGAATACCCACAGGTACCCTGTACGGTCGATGCAAGCGAGAGGGAATCGAGTTGTCGCGCTCAAACCCAACGCCATGGTCAGAAGATGCCATGGGTGAAGCTTTGGAGGCTGGCGTCCAACCCATGCAACAACAAGACATCCACAAAAACATTGAACTGGATCAACAGACTCATCCGCCCGAGATGTACTACCATCAGCCCATGCAAGGGCACGTCCAAAATCATGAAGATAGCGCCCTTCCACACCCTTACTACCAGGGGACCCATGAACGAGGCGATGAACACGAATGTACTCCATGA
Protein Sequence: MPGHGVSQVKCEPQSDEEDSNSQYSLGYFTNQPSILGHCAIKIENGIQHEKSDSTHILQHLQTGLEELAPPAPAGPAATPVCIKQEPSEAPALTLENLEPALMASSTASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRAGAASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAGVQPMQQQDIHKNIELDQQTHPPEMYYHQPMQGHVQNHEDSALPHPYYQGTHERGDEHECTP

Sequence clustering based on sequence similarity using MMseqs2