Cmed129100.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- Mblk-1
- Assembly
- GCA_014851415.1
- Location
- Chr26:2840549-2885315[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.7e-15 5.3e-12 45.1 0.0 1 38 205 243 205 249 0.93 2 2 6.7e-19 5.3e-16 57.9 0.0 1 43 410 453 410 455 0.95
Sequence Information
- Coding Sequence
- ATGGCAGAGACAGAGAAGAGGCGCCCGGAGACGATTCTGGAGAGTCTGATCAAGCGACCGGCTACGCAGCCCAAGTTGGAGCTGCCGGAGGAGCCAGCGGACTGGAAGCCAGCGGATAAATGCTACTTTTGTGTGGATGGGGAGAGGGGGGAGGGGGCTGAGCGGGCAGCGGGGGGAGCGACGAGTCCAGCCTCGGAGTCGGACAGCAGTTCGGTGTCGGGCGCGAAGAGTCCCGGGGGGGCGCCCCCCCTGCTGCAGCACTTACTGCAGCTGCAGCTGCAGGCGCAGACGCCGCAAGCCATTGCACAGTTCCAGCAGATGATCGCGGCGTTGGCTGCGCTGGGCACGGGGCTGGTCCCGCCGGCGCTCTCGCAGGTCTGGCTGATGCAGCGGCTGGCCCAGAACCGACACGACAGGCTACCAGAATCCGGGGACAAGCCCCCGGCGCCCTCGTCTCCGACCCTGGCGGAGCAGCCCCTGGACCTGAGCGCCAAGTCCACCTCCAGCACCAGCGGGACTCCGCCCCCGGAAGCCAAGATCTTGGATAATAGGCTTAAGCGCGTCGGGCTCGACGGCGCGGGCGCAGGCAACAGCGCCGCGCGGCGCACCTACACCGACGACGAACTGGCGTCCGCGCTGCGCGACATCCAGTCCGGGCGCCTGGGCACGCGCCGCGCCGCCGTCGTCTACGGCATCCCGCGCTCCACCCTCCGCAACAAGGTCAACAAGTTCGGCCTCGCCGCCGACCCCCACGACTCCGACCCCGACACCGACCCCGAAAGACCCGAATCCCCACCCTCCGTCATACTCAAAATACCAACCTTCCCACCACCCGACGAAAAATCCCCCTCCCCTGCCACACCCGTCACCACCCCAGTCACACCCATCACCCCCATCATCCCACCACCCCAAAACCCTCTCAACACCCCAACCCTCCCCGCCTTCTTCGCAGACCCCCCCGCCAACCAACACATCTTCACTTCCATCAACGACGTCATCGTCCGAAGCATCAGTCAGAAGTACCAGCAGCTCCCGGACCGACCGCACCAACCCTCCGACCTCCAGTACATGCGCGCGCCCGACCGCCACGTCTCCGTCATCAAGACCCCGCCGGAGAACCAGCGGAACTACCCCGTCCCCAGCAACTCCAAGGCGACGAGCAACAACAACGGCCAGCCCGCCACGGGCAAGGGCACGCGGCCCAAGCGCGGCAAGTACCGCAACTACGACCGGGACAGCCTCGTGGAGGCCGTGAAGGCGGTCCAGCGCGGCGAGATGTCGGTCCACCGAGCCGGCTCGTACTACGGCGTGCCGCACTCCACCCTCGAGTACAAAGTCAAGGAGCGGCATCTGATGCGGCCGCGGAAGCGCGAGCCCAAGCCCCCGCAGGACGTCAAGCCGCAGCCGCCGAAGCCTCCCCCACCCAAACCGCCGACGAAGCCTTTCTCGAACGGCCTGAACGGTCCCGAGACGTCATACCCGTCGGGGTATCCTTTCTGGCCGGGGGCCGGATTTCGCGCCCCCCTCGCCTGA
- Protein Sequence
- MAETEKRRPETILESLIKRPATQPKLELPEEPADWKPADKCYFCVDGERGEGAERAAGGATSPASESDSSSVSGAKSPGGAPPLLQHLLQLQLQAQTPQAIAQFQQMIAALAALGTGLVPPALSQVWLMQRLAQNRHDRLPESGDKPPAPSSPTLAEQPLDLSAKSTSSTSGTPPPEAKILDNRLKRVGLDGAGAGNSAARRTYTDDELASALRDIQSGRLGTRRAAVVYGIPRSTLRNKVNKFGLAADPHDSDPDTDPERPESPPSVILKIPTFPPPDEKSPSPATPVTTPVTPITPIIPPPQNPLNTPTLPAFFADPPANQHIFTSINDVIVRSISQKYQQLPDRPHQPSDLQYMRAPDRHVSVIKTPPENQRNYPVPSNSKATSNNNGQPATGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPPQDVKPQPPKPPPPKPPTKPFSNGLNGPETSYPSGYPFWPGAGFRAPLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01124528;
- 90% Identity
- -
- 80% Identity
- -