Cmar010684.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000067.1:31114-40769[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.82 61 4.6 0.3 3 23 1666 1686 1665 1686 0.88 2 9 1.1 84 4.2 1.0 3 23 1694 1714 1692 1714 0.97 3 9 0.0001 0.0074 16.9 2.5 3 23 1725 1746 1723 1746 0.96 4 9 0.19 14 6.6 4.0 6 23 1757 1775 1755 1775 0.96 5 9 0.00089 0.066 13.9 0.3 1 23 1781 1804 1781 1804 0.96 6 9 0.00072 0.054 14.2 4.5 1 23 1813 1835 1813 1835 0.96 7 9 0.0022 0.16 12.7 0.2 1 23 1840 1864 1840 1864 0.98 8 9 0.00015 0.011 16.4 4.7 1 23 1870 1893 1870 1893 0.95 9 9 0.77 57 4.7 0.5 5 23 1904 1922 1899 1922 0.88
Sequence Information
- Coding Sequence
- atgatCGTTTGTGCAATTacaatgataaagaaatttcatccaGCAATGCTCATTGAAAAtagaattataaaaattgaaagtggTTTGATTATTGGTGAAGATAATGAAGGTTTTTATGCTTATCGTGGAATTCCTTACGCTGAAAGTCCAGAAGGAGATTTGAGGTTTGCATCtccaaaaagattttcacagACTTGGGAAGGAATTCGACCTTTCAAGAATTATAGTCAAGTCTGTTCTCAGTATGATCATTTCACATACAGTTATGTTGGAATAGAAGATTGTTTGACACTCAATGTGTTTGTTCCAAAATCAGTTGTTCAATCTTATATCAGTCATTTTCTAAACTTCAAGAAGACAAGAAAtatgagaaacatttttggGTTTATTGCACTTTTATCAGTGATTTACAATTTGGAATTTTGCTGTGCACAAGAAAAGGTTGTGaacattgaaaatggaaaaattgtaggtgaagaaaaggaaaattattatgcTTTTCTTGGATTGCCTTATGCTGAGAGTCCAACCGGTGAATTAAGATTTGCACCACCAAAAAGATTCACTCAAACTTGGGATGATGTCagagaatttaaaaagttcGGTTCAATGTGTGCACAATATTCTCAAATAGGTTACTCTTATCATGGAATAGAAGATTGTTTGACACTCAATGTGTTTGTTCCAAAATCAGTTGTTCAATCTTATAGTAAATTTCCagtcatttttttcattcatggCGGTGCATTCATGTATGGGGGCAGCAATGTTTATGGCCCTGAAAACATCATGAGGTCACAAAATATGATACTCGTGACTGTAAATTATCGATTAGGAACTCTGGGATTTATGACTACTGAAGATGAAGTAATTCCTGGTAACTTTGGAATGAAAGATCAAGTCGAAGCACTGAAGTGGGTTCAACGAAACATTGAAGCATTCAATGGTGATCCAACGAAAGTTACAATTGTCGGATATTCAGCTGGTGGTGCGAGTGTTCATCTTCATTACATGTCACCATTATCTGAAGGATTATTCAACAATGGAATCTCACATTCGGGTTGTGCTCTCAATCCGTGGGTGATGATGGagaatggaaaggaaaaagcACATCAAGTAGCGAAAATCTTAAATTGTCCCATTGATAATCATCAGAAAATGTTGGAATGCTTAAGAAAGAAGCCAGCTAAAGATTTAGTGATAGttgcaaaagaatttcaacCATTCTTGTACAATCCTTTTTCACCTTTCGCTGTTACCGTTGAGAAACACAGTCCAACAGCTTTCTTAACAGATCAACctcttaaatttcttatggataaaaagtttctgaatCTCAGTCATTTTCTAAACTTCAAGAAGACAAGAAAtatgagaaacatttttggGTTTATTGCACTTTTATCAGTGATTTACAATTTGGAATTTTGCTGTGCACAAGAAAAGGTTGTGaacattgaaaatggaaaaattgtaggtgaagaaaaggaaaattattatgcTTTTCTTGGATTGCCTTATGCTGAGAGTCCAACCGGTGAATTAAGATTTGCACCACCAAAAAGATTCACTCAAACTTGGGATGATGTCagagaatttaaaaagttcGGTTCAATGTGTGCACAATATTCTCAAATAGGTTACTCTTATCATGGAGATGAAGATTGCTTATCACTTAATGTGTTTGTGCCAAAAACGGTTCTAGATAAAGACGAGAAAGTTCCAGTCATTTTCTTCGTTCATGGAGGTGCATTCATGTTTGGGGGCAGTGATGCATATGGCCCTGAAAACATCATGAGATCACAAAATATGATACTTGTGACTGTAAATTATCGATTAGGAACTCTGGGATTTATGACTACTGAAGATGAAGTCATTTCAGGTAACTTTGGAATGAAAGATCAAGTCGAAGCACTGAAGTGGGTTCAACGAAACATTGAAGCATTCAATGGTGACCCAGCGAAAATTACAATAGTGGGCTTCTCAGCCGGTGGTGCGAGTGTTCATCTTCATTACATGTCACCATTATCTGAAGGATTATTCAACAATGGAATCTCACATTCGAGTTGTGCTCTCAATCCGTGGGTGATGATGGaaaatggaaaggaaaaagcACATCAAGTAGCGAAAATCTTAAATTGTCCATTTGATAATCATCAGAAAATGTTGGAATGCTTAAGAAAGAAGCCAGCTAAAGATTTGGTGATAGttgcaaaagaatttcaacCATTCTTGTACAATCCTTTTTCACCTTTTGGTGTTACTGTTGAGAAACAAAGCAGAgaagcttttttaattgaacatCCTGAAACACTTCTGAAGAAAGGAAGTTTCAAGAAAATTCCTTGGATATTATCTCAAACGCAAGATGAAGGTTTATATCCTGCTGCAGAGTTTTACAACGATCActatttgaaagaaatcaatgacAATTGGAATGAGTTGGCTCCATTTATACTTGACTTCAATGGAACTATTTGTGAAAATGACACAAAACTTCAAATATCAGAAGAAATTCGCCAATTCTATATGAAGGATCAAGTAATTGAAAAAGACAGTTATGACAGTCTTCGTGATATGATCACCGACCGACTTTATCACCATGGAGCATTTAAATCTCTTCAATATCAATCAAAATATGCATCAGTCTTTTTCTATTACTTTCGTGCTATAACTAACTCAGGTATAGCTCCAGATTTGGTAGCTATTGGCAgcaatgaagtaaaaattaaCGTACCTTCAGAATACCTTCTTGGCGTTTCTCATGGTGATgatgttttcttaatttataatAACCTTGGCAGTGGAACTACTTTTGCTTCgTACTTTAGATACTGTATGATGACTGAACTCTATATGATGGAACGATGGGAGCGAATCTCAATTcctaaaacagaaaagtttaatttgagACGAAAAGAGCTGAAAATGgatgagaaaaacttttatttatctctaTCAGcaaaaaattatctgaaattcGATCCAGTCAGTCAGATTACTAATGTGTTCTTCGATGAATCAcagaaacaaatattttgcgCTAAGCCAGCAAGTATATCTGTTAAATCACTAGTCCAGGaatcattttccttcatcatcCAAAGTTCACCTCTAATAGCTATAAAGTTCAATGTTGACAACAGTATTCTTACAATCCAACGTACTGAGAATACATTAGAACTTTATGCCTTTAAAGACAATCAGCTGCTACCGAATTCTTCAATaagttttgaaacaaaaaagaccATTCTGGGATTCTTTTGGATCCGAACTAACGAACTTATTATTGTGACGAAAGAAAATgtggaaattttcaatgtcataacatcaaagaaaactttaaaaagTGGACGTGTAGCAATTTCGATAATTGATTCAATAATCATTGTACATCATCAAACATCTAAAGTCAGCCTTCTCTTCGATGTCGCTATCAatggagaagaaaatgttcaagAGCGAAGTGTTATGAATCACACTCCTCTTGTTCCAGGAAAATCCATCGAAccattttcattaaagttgcCTTCAGTGACACACAAGGAAAACACAATGAGTGTGGAACTTTATTCAGCTAATTGGGTGATTTTTTCTGACATTATAATTGACGTAAGAATCGGATATTTGTTTAAGTTAGAGTTGGCAATCAATAAGATTCGTATAggtgataaattaaaattgtgtaaCTTCCTTATGCATCGtcagaaagagaaaagtcTCTTGATAAATACACTTTTACAACTTGTGTCTCCAGAACATGGTGAATCAGTGCAATTAGCAATTCTGGAAGTGATCTTTGATAATTTGAACAaagtttataaacaaaaactcGATCATGATCTTGTGAAGATGCAGTCATTGCCATCTCCATCGACATTTAAAATCTCAACACAACAAATTGTTACTCCACAACTTCCGAATCAAATTGTGATTGAACAGAATGATGTTTTATATGTTTTAAACACAATCGTCGATAAGAATGTTTTGGAGAAAATTTCACTTGTTTACTTGTTTTCACTtgttaaacattcaatttcttGTGAATATGATTTGGGTAAATTGATCGTTTCTACACTCATAAACGGACAAAAAATTGACGAACTTcaacaaatattgaatttcaaagcGATTCATGAATCGAAGCCACTTGCATGCTTTCTTTTGGCATCGAGCAAAAATAACCCATTAATATCACAAATGGCCTTAGACATGCTCTACAGACTCAACGCATTGGAAattattgttgaaatttttcttgagGAAGGAATGGCAATCGATGCTTTGAGACTTTCAAAACAATTCACAAATCCTGATTTCATACCAGCGAGGAAATATCTTGAAGCTGCATTGAAATCTGACAACAAAATGGTCTTTTATTCTGTTTACAAGCATTTTATAGCAAGAAATCAACGATTGCGAGgaaatattgaatttcttaaaaaaatggaacaaTCTTTATTAGAATTAGATAACCATCAGCGATGTTGTCGTTTTTGTTTGAAAGAGTTTGATACCGACGACACCCAAATTAAAATAACCCCGACAGTGATGCTAAGATTTCAGGAATTAACAGAAATTTCGCTTAAAACATCTGACGAATACTCTAATGTTATATGTGAATCATGTAACACCAAACTTAGAAATTTCAATGCATTTCGAAAGGatttaatattcaaacaaaaatgCCTTGAAGGATTTGTTGAAGGTTTTGTAGAGGAATCGCTTTGTTTTGATCGAGACACTCAATTACCTCAAGATGTATCtattaaaagcataaaagacGAAAGCTTGGAAGTAAAAATTGAACCAAAAAATGAGGACGAATATGCAGAATATATAACAACAGAATAtcttgaaaacattcaatatGAGAATGATGCTTATCAGTTTCAAACGGAAGAATATGTCCTGACTGATGGAATGGCTGATGAAAAGCATGTTAATAGTAGagggagaagaaaaacttctaaGATCCAATACAAAAGAGCACTTTGTGGCATTTGTTCCAACTATTACTACAAAGATCAATTGCAACGACACATCGATAAAGTCCATTACAAAATAAAACGATtCTGGTGTGATATTTGTGGCTTTGGAGCTTTTCTCAAATGTAATCTCTCAACACACATGGCAAAACATATCGCTAAAGAACATCGAGAACTCATATGCTGTTCACTTTGCCCTTCAACCTTCACACGCAACGAGAGTTTGAAGAATCACATGAAAACTGAGCATGATGAGAATCctgaaatgttgaaatgcttttgtggaaaagaattcaatttgagACATAAACTTACAACTCATATCAAAAGAACGCACAATAATGATCGCAGTCATGTTTGTGAGTTATGTCCAAAGAGATTTTTTGCACCGAAAGATCTAAAAAGTCACATACTCATAGCACATACGCCAGGATATGTCAGAACTGAACACTTCTGTGAGGTGTGTGGAAAGAAATACGGAAGTGCTAAGAGTTTGAAGACTCACATGAAGCATCATCAAGAACCGGaattcAAATGTCAATTCGATGGATGTCCGAAAgcatttatcaataaattacTTTTGGCAAATCATGAGaaaattcatttgaatcaaAGAGACTTCCAGTGTCATTTCTGTGAGAAATCGTTCTTCAGTGCAAATCACTTGCGACGTCATATTGTAGTGACACACGAGAAAGTTCGTGTGAATTGTTTTGTGGAATCATGTCGCTTTTCTGTTGGGAGAAAAGATTACTTGCGCAATCATATTTTAAGTCATCGAGAGTTGTCTGAGGAAATGAAGCATGCTTATCTCATACAAATACGAGATATGAAACTATAG
- Protein Sequence
- MIVCAITMIKKFHPAMLIENRIIKIESGLIIGEDNEGFYAYRGIPYAESPEGDLRFASPKRFSQTWEGIRPFKNYSQVCSQYDHFTYSYVGIEDCLTLNVFVPKSVVQSYISHFLNFKKTRNMRNIFGFIALLSVIYNLEFCCAQEKVVNIENGKIVGEEKENYYAFLGLPYAESPTGELRFAPPKRFTQTWDDVREFKKFGSMCAQYSQIGYSYHGIEDCLTLNVFVPKSVVQSYSKFPVIFFIHGGAFMYGGSNVYGPENIMRSQNMILVTVNYRLGTLGFMTTEDEVIPGNFGMKDQVEALKWVQRNIEAFNGDPTKVTIVGYSAGGASVHLHYMSPLSEGLFNNGISHSGCALNPWVMMENGKEKAHQVAKILNCPIDNHQKMLECLRKKPAKDLVIVAKEFQPFLYNPFSPFAVTVEKHSPTAFLTDQPLKFLMDKKFLNLSHFLNFKKTRNMRNIFGFIALLSVIYNLEFCCAQEKVVNIENGKIVGEEKENYYAFLGLPYAESPTGELRFAPPKRFTQTWDDVREFKKFGSMCAQYSQIGYSYHGDEDCLSLNVFVPKTVLDKDEKVPVIFFVHGGAFMFGGSDAYGPENIMRSQNMILVTVNYRLGTLGFMTTEDEVISGNFGMKDQVEALKWVQRNIEAFNGDPAKITIVGFSAGGASVHLHYMSPLSEGLFNNGISHSSCALNPWVMMENGKEKAHQVAKILNCPFDNHQKMLECLRKKPAKDLVIVAKEFQPFLYNPFSPFGVTVEKQSREAFLIEHPETLLKKGSFKKIPWILSQTQDEGLYPAAEFYNDHYLKEINDNWNELAPFILDFNGTICENDTKLQISEEIRQFYMKDQVIEKDSYDSLRDMITDRLYHHGAFKSLQYQSKYASVFFYYFRAITNSGIAPDLVAIGSNEVKINVPSEYLLGVSHGDDVFLIYNNLGSGTTFASYFRYCMMTELYMMERWERISIPKTEKFNLRRKELKMDEKNFYLSLSAKNYLKFDPVSQITNVFFDESQKQIFCAKPASISVKSLVQESFSFIIQSSPLIAIKFNVDNSILTIQRTENTLELYAFKDNQLLPNSSISFETKKTILGFFWIRTNELIIVTKENVEIFNVITSKKTLKSGRVAISIIDSIIIVHHQTSKVSLLFDVAINGEENVQERSVMNHTPLVPGKSIEPFSLKLPSVTHKENTMSVELYSANWVIFSDIIIDVRIGYLFKLELAINKIRIGDKLKLCNFLMHRQKEKSLLINTLLQLVSPEHGESVQLAILEVIFDNLNKVYKQKLDHDLVKMQSLPSPSTFKISTQQIVTPQLPNQIVIEQNDVLYVLNTIVDKNVLEKISLVYLFSLVKHSISCEYDLGKLIVSTLINGQKIDELQQILNFKAIHESKPLACFLLASSKNNPLISQMALDMLYRLNALEIIVEIFLEEGMAIDALRLSKQFTNPDFIPARKYLEAALKSDNKMVFYSVYKHFIARNQRLRGNIEFLKKMEQSLLELDNHQRCCRFCLKEFDTDDTQIKITPTVMLRFQELTEISLKTSDEYSNVICESCNTKLRNFNAFRKDLIFKQKCLEGFVEGFVEESLCFDRDTQLPQDVSIKSIKDESLEVKIEPKNEDEYAEYITTEYLENIQYENDAYQFQTEEYVLTDGMADEKHVNSRGRRKTSKIQYKRALCGICSNYYYKDQLQRHIDKVHYKIKRFWCDICGFGAFLKCNLSTHMAKHIAKEHRELICCSLCPSTFTRNESLKNHMKTEHDENPEMLKCFCGKEFNLRHKLTTHIKRTHNNDRSHVCELCPKRFFAPKDLKSHILIAHTPGYVRTEHFCEVCGKKYGSAKSLKTHMKHHQEPEFKCQFDGCPKAFINKLLLANHEKIHLNQRDFQCHFCEKSFFSANHLRRHIVVTHEKVRVNCFVESCRFSVGRKDYLRNHILSHRELSEEMKHAYLIQIRDMKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -