Cmar017761.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000066.1:512807-526219[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.12 9.3 7.2 2.1 1 23 239 262 239 262 0.96 2 25 0.0032 0.24 12.2 2.9 1 23 270 292 270 292 0.98 3 25 1.1 83 4.2 2.7 1 23 384 408 384 408 0.95 4 25 5.1 3.8e+02 2.1 0.5 1 23 415 438 415 438 0.94 5 25 0.0002 0.015 15.9 0.2 1 23 444 467 444 467 0.93 6 25 0.032 2.3 9.1 0.2 3 23 623 644 621 644 0.94 7 25 0.59 44 5.0 3.5 1 23 683 705 683 705 0.97 8 25 0.27 20 6.1 0.2 2 23 713 734 712 734 0.94 9 25 0.075 5.6 7.9 0.6 1 23 796 819 796 819 0.97 10 25 8.8 6.5e+02 1.4 0.2 1 23 861 884 861 884 0.94 11 25 0.00013 0.0098 16.5 6.4 1 23 936 958 936 958 0.97 12 25 0.00071 0.053 14.2 2.3 2 23 968 989 967 989 0.94 13 25 0.00064 0.048 14.4 0.9 2 23 996 1018 995 1018 0.95 14 25 0.00054 0.041 14.6 2.0 1 23 1024 1046 1024 1046 0.97 15 25 0.18 13 6.7 1.0 1 23 1052 1077 1052 1077 0.90 16 25 1.2 88 4.1 0.9 2 23 1295 1317 1294 1317 0.91 17 25 8.7 6.4e+02 1.4 0.1 3 23 1518 1539 1516 1539 0.89 18 25 0.092 6.9 7.6 3.2 1 23 1578 1600 1578 1600 0.97 19 25 0.49 37 5.3 0.1 2 23 1608 1629 1607 1629 0.92 20 25 0.039 2.9 8.8 2.5 1 23 1689 1712 1689 1712 0.97 21 25 0.0016 0.12 13.1 3.6 1 23 1826 1848 1826 1848 0.97 22 25 0.0067 0.5 11.2 4.9 2 20 1858 1876 1857 1879 0.95 23 25 0.00071 0.053 14.2 0.2 2 23 1886 1908 1885 1908 0.94 24 25 0.00014 0.01 16.5 1.1 3 23 1916 1936 1914 1936 0.97 25 25 0.85 63 4.6 0.0 1 19 1942 1962 1942 1962 0.98
Sequence Information
- Coding Sequence
- ATGAATCTCTGTCGCTTATGTGGTGAAGAAAAAAGTCCACTTGACTTTAACATTGAGTTAAGTGATAAATCTCATCTAAATTGGAATTATCATGAATTAATAGAACATCACACTCGAGTAACATTGAAAGTTAATAAGCTTTTACCTCAAGGAGTTTGTGAAGAATGTCGAAGTTTGGTTGAGGATTTTGCtgtgttttcattaaaagtccAAGAAGTTCAAAATTCATATAACATTGATGAAGACGATCTCATCTTCACTGGGGAACATGCACAACTTAATTCAATCGTTCAAATATTTCCCGAAGCAATAATAAAAGAACCGAAGGATTCAGATGATAGCAGCTGTAATAATCAAGACAATGATCATTTCGAAGAAGAATTAACATTCGAAGAGATTTTTTATGACAAACTTCATAAAAATGCAGACAGTTTGCTTGACTTACATCTAGATGTTCCGAAAATAGCAATtcttgaagaaggaaaagtgtCAGAATCATCTCTGTTGCTTATAAATTCAACTAGGTGGagtgaaatgataaaaaattgtgatATCTCAAGTAAAAGTCTTAATGAACTGCTATCTCATCAAGCATTTTATCAGAACACAAAAAtagtgaaatttaattgcaaacTTTGCATTTGTTCATTTAATAAGATCTACAGCTATATCAATCATGTTATGAATAAACATTTACAGCTCGAGCATTTGCGATATTGTTGTTTAATATGTGACATGATGTTTTATAGTCTTGTACCTTTATATCATCACGTTAAGATTAATCATCCTGAATATAGTCCAAAGATCTTTCAGTGTTTAATTTGTGGTCATTATTGTGAAGATTTAGCAGACTTGAAGAAGCATAAAAGAATTCATAATGAAAGCGAAAATGCTGAAGAGATATCAGAAATTTCACCAATGATAACAGCAACAACGATGCACAATGAAGGGACATTGAAAAACGACGATGTTTACAAGAACGAAGATGGGACAGTTGGTAATGAAGATCAGTTCGCAAAATGGTCagattttcatataaattgtTACATCTGTGAACTTAAAAATCTGACTCCAATTGATTACTTTTCCCATCATCAAAACTTTCACATAGATTGTTTGATTCCTGGAAGTCTTCAAccaagttttaaattttcatgcaataaatgtcatcaagaaaatttttcttcgctAGCTTCATTCAgttcacatttaatttcaaaacatgAGCTTCAAGAATTAAGTTTTCGATGCATTGTTTGTTCCAAAATGTTTTGGAATTATGTTGCTTATTCTCAACATCTTAAATCAATTCATCCATCCTTTCATCACTTTCTCTGCACAATGTgtggaaaaatttataatgaattaTCAGCTTTAAATCGACATatcaaagaaattcataattCTGGAGATaaggagaaatatttaagaaaaagaaaaatgaaatctgatgaaagtttaagtgaaaagcgaatgaaaaaatCCAAAATTATGAAGAAGGAAAGTGAATCTGAATTAAATACTGATAGTTCAAAAAGTGAATATGAAAACGAATTAAGTTGGgatgaagtttcttttataaataatcgaaaagagaggaaaagtaaaaaacatcaacagaaattaaatgaaaactcaaAACGAAGACCAAACAATCGTCATCGTCCTGAAAAGCAAACTTTATTTGGACCTGAACTTGATACACCTGAAAAACTTTATAGCAATGAGATCAATGGGAAATCTGTGTTCACTTCAACATTGTATTTAAATGTGAGTGCAGTTTGTAAGTTAAATAATGGTGAAGTAACCGAAGAAGCTGCTGAATCTCAAGGTTTAAATTCACTGAGATGGAAAGATTTGATGATTTGTGCAgtatgcaaaataaaattcacaaacaTCAACAGTTTAACTGAACATATTGTGAAGAATCATGGCAGCAGAACTCGAGCTTTTGGCTGCTTCAATTGTGATATTAATTATGGAGCTTTATATGAGAGTTCACTAGTGAATCATCTCGTCGAACGCCATTATCttgaacatttgaaattctGTTGTTTAATTTGTTCAAAACTCTTCTACGACTTTCTTTCACTTGTTCAACATTACAAAAGTCATAAagggaaatttgaaattttagtttGCTTCATTTGTGGATTTTATGCAAAGACTCTTGATGACTTAAAAGAACATAAAGCATATCATGTCCAAATGGAAAACTCAAAACCTGAAAATCAAACACtttgtgaaaaagttttacaaaaatttaatgaaggtTTTGAGTCAAATACTCTTAACGAGGATGTTGCTGATTTCGAGAGACTTCCAGATGGAACTGTTACTATTGAATGTGAGCGTCGTTTCACAATTGATTGGAATTTTGCGCAATATCAATGTCCATTATGTCAAGTCACTCATCCAAATCCATTTGAGTTATTCGTTCATCTTCGACTGAAACATCCGAAAGAACAAGAACAGATAAGAAAGATTTATTCTTGTAATTCTTGTgtggaaaagaaagattttagtGGCAtgcattattttattaatcatgcatctgattttcattttgaaagtCTTCGATTTACTTGTGTGGTttgtttgaagcttttttgGAATTACATCGCACTGGCGAATCACTACAAAAATGTTCATCCTTCATTCACAACGGTTTATTGTTGCCATTGTGGAAAGTTATTTCACAGCATCACTTCCGGTGCAATACATTACAAGAAAATCATGATAATGCTTactgaagaagagaaaagattgaagaagGAAGGTAAATTAGAAGCTGAAGTTACAAGTCACATTTGCCATGTGTGTGGAAAAAGTTGCAAAAATAATTATACATTAGTGAAACATATAACAACACATGAAGAGCCCGATCCATCAAAAATGCTTCAATGTCACATTTGTAGTAAATTGttcaacacaaaaaataaactcaatCAGCATATGGTGGGTCATAATAATCTAAGGAAATGGAAATGTAAGATTTGTGAAAtgtctttcaatttcaaaaagcttttacaaaTGCATACTCGGgCGGTTCATGAGAATGAGAGATCTTTTGCATGCAGCTTTTGTgagaaaaagttcttcaagaAATATGATTTAACGGTTCATGTTCGACTCCACACTGGTGACTTTCCTTACGTCTGTCCGGTTCAAGAATGTGATTCAAAATATCCAGCATGGAGTAATTTGTTTAAACATTGTCAATCGCGCCATAAACTTGACATAAGATCGGAAGGATATAAAAAGCTTAGAGCTTCGGAGAAAACTCAAAATGAAGATTTCGTTTCTGAAATGAATCTGTGTCGGCTTTGTGGGGAGGAAAAAAGTCCTTTAGATTTCCACATTGAGTTGGAAGACCAAGTAAATCAGACTTGGAGTTATCGTGATCTTATCGAATATCATACTCGAGTTTCTCTAAATTGCTATAAACTTCTTCCACAAAGTATTTGTGAAGAATGTCGAGAACATGTTGAAAAGTTTGCAGAATTCAGTAAAAAAGTACATGAAATACAAAACAACTACGACGTTGAACATCATGAATctcaaacattaaaagaaaatgttgaagaagttaATTTGTATGATTGTTTAGATATTAAACATAACACTGATCTAGTTGTTAAAGactcaaaagaagaaaaatcacgTAAATCTCCACGGAAACGGCcacgaaatgaaaaacaaacttcGCTAACTGTGGAGAgcattttcaacaacattgTTCTTAACGCtaaatcatttgatgaaaagGATTATCAACTTAATGAAAACGGAGAAATATTGGATGgttcattattttcaaagaaCCTCGTGAAATGGACAGattttgacattaaaattaattatgactCAAAAAATGACTTAACATGCTCCATATGCTCCAACAGCTTTCACGAAGtctataaattattaaatcacATTGTTAACAATCATCCAGAAGCTGAATATTTGAGGCAttcatgtttattttgttttagagtattctttgatttaaaatttctttttcaacattttaaagaatatCATAAAGATGaatctttaaacatttatcaatgTTGGACGTGCGGAGATTAcgaaaaatcaattcaatcatTACAGCAACATGCAAATGGACATTTGCCAGAAACAAATAAAGATTCACGCAATAGCAATTATTTGTCACCATCAACACGatcaaaacgaaagaaaatttcagttGTTTCGATCAATAATGagcaaaaagattttgaaagagattttcatGAATCGGAAAGTGAATATTATGAAAGTTCAAGTTGTGAAGATTATGAAAAACCAAAAGGATGCCGACAAAAAGGCGAAGTGAAATTgtatggaagaaaaagaaagaaattaacaaaGAACTTGTTCGGTAAAGAAATCGACacatttgaaaaacttttctctgaTGAAATTAACAAAACATCGTCAAATCTTCATCTTAATATTAATTACGATTCACTGTTTAATGAAGGTGAAATACCAGAAAGTTATTTGGTCAAAGTTAGTGAAATCAGATGGCGAGATTTACTAAATTGTGGTGCTTGCAAAATTCCTTTTGTGAATATAAACGATCTTTTGGATCATTCtgaaatgaaacataattcaagagagaaattatttcactgCACACTTTGCAATGGTGAATTTACCGGATCATGTGAAAGTCTTCTAATTAATCATCTTGTTGATCGACACTTTTatgaacatttgaaattctGCTGTCTTGTATGttccaaattattttatgatttactTTCGCTTGTTAAACATTACAAAACtcataatggaaaatttgaacTTTTGGTCTGTCTTATTTGTGGATGGTATGCAAAGTCACTTGAAGATCTTAAAGATCATAAAGTTTATCATATGTTATCAGAAAAATCAGAGAATCAAAAGCTATGTGAACTTgtgtttgaaaagtttaattcgcAATCAGAACCATCAATAAGCAATTTATGTGTAGCTGAATTTGAGAAGCTTCCTGATGGAACGGTGACTGATGAATGTCAAAGAAGATTCACTTTAGATTGGAGTTTTGGTAGCTTTCAATGCTCCACATGCATCTTAAGTTTCACAACACCTTTCGACTTGTACGTCCATCACCgattgaaacattcaaaagaaagtgacaagaaaatttattcatgcaCTTTATGCAGTGATAAAAAGGATTacggaaatatttttacatttgttAATCACGCAACTGCTAAGCATCTCGATAATGCCAAATTTTGTTGCATTGTTTGCTCAAAAATTCATTGGAATTATTTAACATTGGCAAATCATTACAGAAatgttcattcaaattttcccTGCGTCTTCTGTTGCCATTgtggtaaaatatttatgaatgtcaCGGTGGCTGCTTCGCACTTCAAAGCATTAAATCTCTTAAGGACAcctgaagaaagaaaattattaaaggaaggaaaaataagcgaagaaaaaaatcacatttgCCATGTTTGTGCGAGAAACTTCAAAAATCGCGGAACACTTTTAAATCATGTTAAAACTCATGAGACTTTAGAACCGTCAGATCTTCTCCAGTGTCACATTTGTAGTAAATTctataaaaataaatacaaacttGCACAGCACATGGTTTGCCATGAAGATCTTCGCAGTTGGAAATGTAAAGTTTGTGGACTTGCCTTTAACTATAAGAAACTTATGCTTCGACATATTCAAgCTGTTCATGAAAACGAACGCCCATTTGGTTGCACATTTTGTGAAAAGAGGTTTAATTCCAAATATGATTTAACAGTTCATGTTCGACTTCATACGGGTGAATATCCCTACGAATGTCCAGTTCAGGATTGTGTCGCAAAATATCCAGCATGgagtaatttatttaaacattAA
- Protein Sequence
- MNLCRLCGEEKSPLDFNIELSDKSHLNWNYHELIEHHTRVTLKVNKLLPQGVCEECRSLVEDFAVFSLKVQEVQNSYNIDEDDLIFTGEHAQLNSIVQIFPEAIIKEPKDSDDSSCNNQDNDHFEEELTFEEIFYDKLHKNADSLLDLHLDVPKIAILEEGKVSESSLLLINSTRWSEMIKNCDISSKSLNELLSHQAFYQNTKIVKFNCKLCICSFNKIYSYINHVMNKHLQLEHLRYCCLICDMMFYSLVPLYHHVKINHPEYSPKIFQCLICGHYCEDLADLKKHKRIHNESENAEEISEISPMITATTMHNEGTLKNDDVYKNEDGTVGNEDQFAKWSDFHINCYICELKNLTPIDYFSHHQNFHIDCLIPGSLQPSFKFSCNKCHQENFSSLASFSSHLISKHELQELSFRCIVCSKMFWNYVAYSQHLKSIHPSFHHFLCTMCGKIYNELSALNRHIKEIHNSGDKEKYLRKRKMKSDESLSEKRMKKSKIMKKESESELNTDSSKSEYENELSWDEVSFINNRKERKSKKHQQKLNENSKRRPNNRHRPEKQTLFGPELDTPEKLYSNEINGKSVFTSTLYLNVSAVCKLNNGEVTEEAAESQGLNSLRWKDLMICAVCKIKFTNINSLTEHIVKNHGSRTRAFGCFNCDINYGALYESSLVNHLVERHYLEHLKFCCLICSKLFYDFLSLVQHYKSHKGKFEILVCFICGFYAKTLDDLKEHKAYHVQMENSKPENQTLCEKVLQKFNEGFESNTLNEDVADFERLPDGTVTIECERRFTIDWNFAQYQCPLCQVTHPNPFELFVHLRLKHPKEQEQIRKIYSCNSCVEKKDFSGMHYFINHASDFHFESLRFTCVVCLKLFWNYIALANHYKNVHPSFTTVYCCHCGKLFHSITSGAIHYKKIMIMLTEEEKRLKKEGKLEAEVTSHICHVCGKSCKNNYTLVKHITTHEEPDPSKMLQCHICSKLFNTKNKLNQHMVGHNNLRKWKCKICEMSFNFKKLLQMHTRAVHENERSFACSFCEKKFFKKYDLTVHVRLHTGDFPYVCPVQECDSKYPAWSNLFKHCQSRHKLDIRSEGYKKLRASEKTQNEDFVSEMNLCRLCGEEKSPLDFHIELEDQVNQTWSYRDLIEYHTRVSLNCYKLLPQSICEECREHVEKFAEFSKKVHEIQNNYDVEHHESQTLKENVEEVNLYDCLDIKHNTDLVVKDSKEEKSRKSPRKRPRNEKQTSLTVESIFNNIVLNAKSFDEKDYQLNENGEILDGSLFSKNLVKWTDFDIKINYDSKNDLTCSICSNSFHEVYKLLNHIVNNHPEAEYLRHSCLFCFRVFFDLKFLFQHFKEYHKDESLNIYQCWTCGDYEKSIQSLQQHANGHLPETNKDSRNSNYLSPSTRSKRKKISVVSINNEQKDFERDFHESESEYYESSSCEDYEKPKGCRQKGEVKLYGRKRKKLTKNLFGKEIDTFEKLFSDEINKTSSNLHLNINYDSLFNEGEIPESYLVKVSEIRWRDLLNCGACKIPFVNINDLLDHSEMKHNSREKLFHCTLCNGEFTGSCESLLINHLVDRHFYEHLKFCCLVCSKLFYDLLSLVKHYKTHNGKFELLVCLICGWYAKSLEDLKDHKVYHMLSEKSENQKLCELVFEKFNSQSEPSISNLCVAEFEKLPDGTVTDECQRRFTLDWSFGSFQCSTCILSFTTPFDLYVHHRLKHSKESDKKIYSCTLCSDKKDYGNIFTFVNHATAKHLDNAKFCCIVCSKIHWNYLTLANHYRNVHSNFPCVFCCHCGKIFMNVTVAASHFKALNLLRTPEERKLLKEGKISEEKNHICHVCARNFKNRGTLLNHVKTHETLEPSDLLQCHICSKFYKNKYKLAQHMVCHEDLRSWKCKVCGLAFNYKKLMLRHIQAVHENERPFGCTFCEKRFNSKYDLTVHVRLHTGEYPYECPVQDCVAKYPAWSNLFKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -