Cmar011455.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000052.1:213878-223238[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 5.5 4.1e+02 2.0 0.3 2 16 12 26 11 27 0.92 2 32 0.74 55 4.7 2.8 1 23 248 271 248 271 0.95 3 32 0.024 1.8 9.4 1.7 2 23 277 299 276 299 0.95 4 32 0.36 27 5.7 1.3 2 20 326 344 326 346 0.94 5 32 1.8 1.3e+02 3.5 1.3 5 23 353 372 346 372 0.84 6 32 0.4 30 5.6 0.1 2 23 381 404 380 404 0.95 7 32 0.00022 0.016 15.9 0.4 1 23 431 454 431 454 0.96 8 32 0.014 1 10.2 1.1 1 23 516 539 516 539 0.95 9 32 0.063 4.7 8.1 1.1 1 23 543 566 543 566 0.94 10 32 0.066 4.9 8.0 3.9 1 23 696 719 696 719 0.96 11 32 0.00028 0.021 15.5 1.4 1 23 776 799 776 799 0.93 12 32 0.045 3.3 8.6 2.1 1 23 853 876 853 876 0.97 13 32 0.15 11 6.9 2.1 1 23 880 903 880 903 0.95 14 32 1.5 1.1e+02 3.8 2.0 1 23 1009 1032 1009 1032 0.85 15 32 0.017 1.2 9.9 1.2 1 23 1036 1059 1036 1059 0.97 16 32 9.4e-05 0.007 17.0 0.9 1 23 1189 1212 1189 1212 0.97 17 32 0.0015 0.11 13.2 3.0 1 23 1315 1337 1315 1337 0.96 18 32 0.16 12 6.8 0.8 1 23 1343 1366 1343 1366 0.95 19 32 1.6 1.2e+02 3.7 5.1 1 23 1370 1393 1370 1393 0.95 20 32 0.49 36 5.3 3.5 2 17 1486 1501 1485 1502 0.89 21 32 0.44 33 5.5 3.0 1 23 1513 1536 1513 1536 0.96 22 32 0.0021 0.15 12.8 0.4 1 23 1540 1563 1540 1563 0.96 23 32 0.0057 0.42 11.4 1.2 2 23 1624 1645 1623 1645 0.96 24 32 0.0088 0.66 10.8 0.6 2 23 1680 1702 1679 1702 0.96 25 32 0.17 13 6.8 0.1 2 23 1721 1743 1720 1743 0.94 26 32 3.9 2.9e+02 2.5 7.8 1 23 1747 1770 1747 1770 0.94 27 32 0.00048 0.036 14.8 4.4 1 23 1781 1804 1781 1804 0.96 28 32 0.088 6.5 7.7 1.7 1 23 1812 1834 1812 1835 0.93 29 32 0.04 3 8.7 3.5 1 23 1946 1968 1946 1968 0.98 30 32 0.094 7 7.6 5.6 1 23 1974 1996 1974 1997 0.96 31 32 1.4 1e+02 3.9 0.2 2 20 2052 2070 2051 2074 0.77 32 32 0.0045 0.33 11.7 0.6 2 23 2105 2127 2104 2127 0.93
Sequence Information
- Coding Sequence
- ATGGATTTAAGTatccaaaaaaatattcgaacaACATGTAGGACttgtttaagaattttcaagtCAAAAAAAGAACTGATTTGTCTATTTGATTATGATCAAACTTACTCAACaaccaaaataaaatattctgaaatgCTCAAAGAAGTTGTAAAACATCAGGTCTTCGAAGATGATTTGCTTCCAAAAAGAATTTGTGTGTTTTGCTTACAACAAACTCGAAGTGCATTTTACTTCAAATTGCAAGCGGAGGAATCCTATCAAACATTAATGACTCAATTAGGAATCACTCCTGTAATATCTCCTGAACTAATTAAGAAAGAATCATCAGCTCAAGAATGCACACAGAACACAAACGAGAGGATCGAAGTAACGCCTCATCCTGTTGATCTTAATCATCAAGATGGTTTTCAAGATTTGCTGGTTGAAATCGAACCACCAAAAATCCAAGAGCCAATAATCTCACAACAACTTAATGATGATGAGTCGGAGGATAATGAAGAATTTGCTGATTATGAACcttttgatgaagaagaagctcaagaaaatttttctgatCATGAACAAGCTCCATTTGAAGATAATTCATGTCCAAGAACATCTATTGGCGAGATGCAACCATCATCAAGCAAAAGTTCAAAATCACCAGATAGTGGTATCAGTGACGACGCAAACAGAATTTTGAAtacaaatttcaatgaaaatcaaattcttgAATCTCAACGTTGTGACGCCAAAGATTTTGAATGTGATATTTGTTTCAAACAAATGTTCAGCTTGAAAAGTCTTTCAcgtcataaaagaaattttcacaatgcCAATGAAAGTCGATGTCCTTATTGCAAACGAAAGTCATTCAATCAAGCAACAATGAATCTTCATATCCGTTACCGACATCCCACTAAATACAACGAGTATAGATTGGGAAAGAAAGGCAATGCGGTTGTTGTCCTCGAACCATTATTAAACATCCCGCAGTGCAACTCATGCGATCATAACTTCCCTGACATGACTTCACTTTATCGTCATCATGCAAATTGCGACAAAATTTGCAtcaaatgtgaaatgaaatttaatcgcaaagatttttatttccttcatttgGATCGTGACCATGGAATCAAAATTACAGAATCGCTTGAATGTCCGTTTGGTTGTGTTGGATCATTCAATTCTGAAAAAGTTCTTAATAATCATATCCAGAGCAATCATCCTGATGATAAAGATAATGAATCAATCGCTGAATCGATAAGTGAAGAATGTGAAAGTATAAGTAATGATTCAACAGCATTTCAATGCGAAGTATGTGATGCCAGTTTTCCTTTCAAACGTGGTCTTACTAATCACATCAATCAGAAGCATAGCAAAGCGAATCAATCTAAAAAGTTGCCATCGGctgttcaaaaatattcacgtGAGGAATTCATTGACAAGTTTATTGTTCAAAAGTCAGCTTTATTTCATCGTTGCGTCATTTGCGAAAAAGATATTCATCGTAAGAGTgtaaatttacatttgaagAACAAGCATGCATCATTTAAAAGGTACATTTGTGAGTTATGTCCCGTGTCATTTGTACGAACTGATTATCGAATGAGACACATGCACCTCACTCATCCCGAAAACTTCAGATGTGATAAATGTAATGTTCAATTTGATCGCAATTACAAATACGATGGGCATATGGAAGAACAACATGGAATTCCAGCAAAACATTTGAAACCTGAAGAGGGAACAGACAATTATGACTTAAACGATATCGAACTCAAATATATTGAAGACACATCGACTTACGATTATTCAAGTGAAATTGTAAGACGGAATAGCGTGTTAAGTACAAGCAATTCACAACAGACTGAAGTTCCAATGACGAAAGATGAATTCATTGAGAAGCACATTGAAACTTTATCAGAGAAGAACACGCATTGCAATGTTTGTCAACAGAAAATGCATCGAAATAGTATCATAAGTCATTTACTTTGGAAGCATGCAGTTAAGCGACCACTAAAATGTGCTTTTTGTAATGATCGAATGGTGAAAAACAACGCAAGACTCAATCACATGGCACGTTGTCATCCAGATGAATATCATTGCAAAATGTGTGAAGAACAGTTTGTTAGACATGAATTCTATGTCAATCATATGAAAGAAGAACATGGAAAAGTTGTAACATCGAAACCATCAAGTGGGGAAGAAGATGACTTGAATTGGAGCGAAATTAGATTTGTCGCTGTGAAAGACGAAATGGAACCAATTGAAGAGGCTGACGTAATCCCAACTGTTGTCAACAatgatgaagagaatgaaacaCAAGTTGATGTTGAATACGAATGTGAACTTTGTGATCGGATATTTACATCACCTAAAAATCTACTCATTCATAAATCGCATAAGCATAAAGAAGAAtcgaaagtttcattcaattattttgagTTTTGTGATACTTTCACGACAGCTTTGAATTCAACTGACATCAGATGTAATGTTTGTAGTTTAacgatgagaaagaaaaattttggatGTCATTTAAAGTGTCGTCATGCTGTAAGTGGCGCTTTTAAGTGTGCAGTTTGTCCTAACAATTTCTTTCGACCAGAACATCGAATGCAACACATGTCAAAGTCACATCCAGGAATGTTCTTTTGTTCAACATGTAACAtacaattttatgttaattcaagattttcaCTACATATGCGAGATCAACATGACATTGAGATTGATCCTAGTGACAATTATAAAGTTGATTTGAACTTAAATGAATTGCAATACCAAGcaaagaatcaaaattttcgAGATGAAGATGCAATTGCTGTGCCATCAATAATTCATGAAGATGAGGAACAAAATGAAGACGAATTGTCAAGAGATGAACAACGAGAGATGTTAACTCGCGAAGAGTTTCTTGAACGTTATATAACAACAGTCAATAgaacaacaagaaaatgtCACCCATGTGATAAAACCAtactttcatcatcaattttcaatcatttaatGTCTTATCATGCTACTATTCTTCCATATAAATGCCCGTTTTGTGATCTCCGATTATTACAAAATCATACTCGAATTCGtcatattcaaattttccatcCCAACGACTACAAATGTACGAATTGTGGACTTCAATACTATAAACATGCTACTTATGCGGAACATATGCTTATTGAGCATAACACGAGAAAGATTCAACCAAAATCAGCTGGCGAAGAGAAGGATTTAAGTTCGTTTGAAATCAAATATGTTAAAGATCGTAGAGATGACATGCAAGATGAAGATCTTCAAAATAGTGAAACATCGTCGACAACATCAACAGTTAAAAGTCCATATAAAGTGTCTGAAGGATTTCTCATACcaaaagttaaaaaagagCCAATTGAAAAGCAGTTGACAGTCCGTTCATCAGttgaaagcaagaaagaaTTCGATTTCACCacttttaaagagaaatttttaattcatggAACAAATTCACAATTTAAATGCATTCCTTGTAAACGTCTGGTGATGAGAAATCAAATACATGCACATTTGAGATACTGGCATGCTAAAACAATGTCTTACAATTGCGAGCTTTGTGATGCTGGCTTTCGTCGAAGTGATTATATGAAGCGACATTTGCAAACAACTCatccaaataatttttattgttcacaTTGCAATGAACAATTTCTTTGCGCAAGATCATACAACATTCACATGAGTGGTCAACATAAGgtgatgaaaagaattctaGAAAGAAAACCTTTTGAAGTACTTTGCGTGCCATTGCCAAATCTTAAATATGCTGAACATGTTGACATAAGGTTTAAAGAAAACGATCTTGTAAAAGTGAGCAGCCGTTGTTCAACATCGAAGCATGAAGTTATAGCACCAGATAAATCATTGACTTACAGAAACTTTGTTGATCTTTATTACGAGCTACTTAATGATGACTTtttcaaatgtaaaatttgtaacaaaaagttttcaaaatcttGGATGGAAAAACATTCGAAGAGAGAACATGCAGCTAGTAAAGGATTCTTCTGTGAGTTATGTAATGACAGTTTCGACTCAGCAGATGAGCGTATGAAGCATATGAGTAACAAACATAAGGAAAGTTTCAGATGCTCTTACTGTaaagaacaattttattgttcGTCAAGGTTTACTGATCATATGTTGAATGAACATGGAATAAGACTGAGAGCGACGTTCAGTAAACCAATAGATGAGATTGATATTCCATTGAACAATCTTCGATTCATTCCAAAGAAACGTTCAGACTTAACACCATCCCAACAGCCTGTACTGCAACCAGCAAAGTCAGAAGGCATCAGAAAAGTTGCGTTTATTAAGAACAAGAACTTGTTCTCTGATCTTCCTGATGACATCGAATTTACACGTGAAGAGTTCTACGGAAAATTCTATCGAAGAGTCGACggtaaaaagtttattgacggacaaacgaaatgttttgcttgtggaaaatcattttctacAAAATCTCGACTATGTCATGCCATAAGTAATCACGCAATACGTGCACCATTCTCATGTGAACTTTGCccaaagaaatatttccgtTTGAGAAAACGTTTTCTTCATATGAGTCGATCTCATCCAAACGATTATCGTTGCAATGAATGTGATATTCAATATGATCGAGCCTACAAATACGCAGACCATATGAAGGGAACTCATAATCTTATTGTTGATGTTCCATATTTTGACAATGAGGTCTATGATATTCCAACTGCTAAAATTCGTTACATGAAGAACTTGCTAAGAAAGAAAGATGTTAAAAAGGAGCCGGAAGTTGTCGATGAAAACAATGCGTCAATCGATGAAATGCCATTCCACTTCCTTGAAATGGAGAATCTCAAATGCAGCATATGcgaagaaacttttgattcaTCGAGAAGCTTACGATTTCATTTGAGAAATCACACAAACATTGGTGGACCTTCGAATGGACCTTCAAAGGAACCACAAAAAAAACCACCAAAGCTGTTAGAAGAAATTTCTCGACTTCCAATTTCTACAACTGTTAAATGTGAAGTTTGTTCTCTAACATTCGGTTCACTGTTTGCATTAAATTTACACATGAAACATGTTCATGGCTTTGGAATTGATCCAGAcgagaaagaaggaaattcaaagaaatctgAAGTCGAATGTGATATTTGCGATTTCACTTCTGAACGTCGAGATAAAGTTGAAACTCATGTGAAATTGGAGCACAAACCAGAATTTGCTTGTTGCTACTGTTCTAAAATTTGCAGTTCCTATAACAGTTTCCGAATGCATATTCACAATCTTCATGGCATGAATGATTACAaggatgaaaatttgtttcaatgcACTGAATGTCATAAGCGATTCTCGAAACTTGATAGCATGGAAAAGCATCGTGaaagtaaacatttaaacGGAGTGAAAATTGATCATCGCTGTCAAGTTTGTGGTGTTATTTACCCCAATTCCATCAAATTACAAATGCattttgaaaatcatcatcataaagaaCTGGAACATTTCATCACAAATGTACTTGAAGTGAAAGCAACGCCACCAATTATTAAAAGTGAACCAATCGATGAGGCGACTGAGAATGACAAAATTGAAACTGacgaaggaaatgaaattcttgatcCGTTTTTCTGCATGCttaaaaatgttgttcaaATTCcaaatgacaatgaaaatgacGAGCCTGCGacgaaaaagatgaaaattgatgaagatttaGAGGAAAAACGCTTGCCAATTCCACCACGACGGCGTTCAATTGCGAATGACAATGATCgagttgaatatttaaatcatcTTCAATGTAAGAATGGATTGTTCCGTTGTGGTCTTTGtccaaaaatatcaaaaactcGACGTTATATGCTTCGTCATTTGAAGCATCACAAAGAAATTCCAACATACAAATGCAGTCAGTGTTCAGCAAAGTTTGtgttcaaaaagaaatttgatcgACATGTGAGGAACCATCACAgtgaaaatggagaaaatgttgaagaagatgAGAATGTGAATGAAGAAGTCGTCTCGAAAGAACAAGAAGTTGTTAAAATTGTTAATGTCGATGAACATCCAAAATTCCAAGAATTGTCATCTCCGAAAGTTGACAGCAACGATGAGTTTGATGatcaaattaaatgtgaaatttgtaaaatgaCATTTAAGTTGACAATCATTTTAAATCGTCATAACAGCATTTGGCATGGTGAGGGAAATCCTAACAAACATCTTACGATGATGGaacaaaaggagaaaaaaggaTCATCAAAGAGCgaattaaacttaaaattgttACGTTGTAAATTCTGTTCTGAAGCTTTCATCAAACCACACGAGTTAGAAGCACATACGAAAGATGTTCATTTGAGAATAGAGAGAATCTTCATAAAGAGTCAGAATCTGAGTCAGAAACTGATGATGTCCCAGAAATTGCAAGCAACATTGACAATTTCTCTTGTGAAAGATGTGGCTTAA
- Protein Sequence
- MDLSIQKNIRTTCRTCLRIFKSKKELICLFDYDQTYSTTKIKYSEMLKEVVKHQVFEDDLLPKRICVFCLQQTRSAFYFKLQAEESYQTLMTQLGITPVISPELIKKESSAQECTQNTNERIEVTPHPVDLNHQDGFQDLLVEIEPPKIQEPIISQQLNDDESEDNEEFADYEPFDEEEAQENFSDHEQAPFEDNSCPRTSIGEMQPSSSKSSKSPDSGISDDANRILNTNFNENQILESQRCDAKDFECDICFKQMFSLKSLSRHKRNFHNANESRCPYCKRKSFNQATMNLHIRYRHPTKYNEYRLGKKGNAVVVLEPLLNIPQCNSCDHNFPDMTSLYRHHANCDKICIKCEMKFNRKDFYFLHLDRDHGIKITESLECPFGCVGSFNSEKVLNNHIQSNHPDDKDNESIAESISEECESISNDSTAFQCEVCDASFPFKRGLTNHINQKHSKANQSKKLPSAVQKYSREEFIDKFIVQKSALFHRCVICEKDIHRKSVNLHLKNKHASFKRYICELCPVSFVRTDYRMRHMHLTHPENFRCDKCNVQFDRNYKYDGHMEEQHGIPAKHLKPEEGTDNYDLNDIELKYIEDTSTYDYSSEIVRRNSVLSTSNSQQTEVPMTKDEFIEKHIETLSEKNTHCNVCQQKMHRNSIISHLLWKHAVKRPLKCAFCNDRMVKNNARLNHMARCHPDEYHCKMCEEQFVRHEFYVNHMKEEHGKVVTSKPSSGEEDDLNWSEIRFVAVKDEMEPIEEADVIPTVVNNDEENETQVDVEYECELCDRIFTSPKNLLIHKSHKHKEESKVSFNYFEFCDTFTTALNSTDIRCNVCSLTMRKKNFGCHLKCRHAVSGAFKCAVCPNNFFRPEHRMQHMSKSHPGMFFCSTCNIQFYVNSRFSLHMRDQHDIEIDPSDNYKVDLNLNELQYQAKNQNFRDEDAIAVPSIIHEDEEQNEDELSRDEQREMLTREEFLERYITTVNRTTRKCHPCDKTILSSSIFNHLMSYHATILPYKCPFCDLRLLQNHTRIRHIQIFHPNDYKCTNCGLQYYKHATYAEHMLIEHNTRKIQPKSAGEEKDLSSFEIKYVKDRRDDMQDEDLQNSETSSTTSTVKSPYKVSEGFLIPKVKKEPIEKQLTVRSSVESKKEFDFTTFKEKFLIHGTNSQFKCIPCKRLVMRNQIHAHLRYWHAKTMSYNCELCDAGFRRSDYMKRHLQTTHPNNFYCSHCNEQFLCARSYNIHMSGQHKVMKRILERKPFEVLCVPLPNLKYAEHVDIRFKENDLVKVSSRCSTSKHEVIAPDKSLTYRNFVDLYYELLNDDFFKCKICNKKFSKSWMEKHSKREHAASKGFFCELCNDSFDSADERMKHMSNKHKESFRCSYCKEQFYCSSRFTDHMLNEHGIRLRATFSKPIDEIDIPLNNLRFIPKKRSDLTPSQQPVLQPAKSEGIRKVAFIKNKNLFSDLPDDIEFTREEFYGKFYRRVDGKKFIDGQTKCFACGKSFSTKSRLCHAISNHAIRAPFSCELCPKKYFRLRKRFLHMSRSHPNDYRCNECDIQYDRAYKYADHMKGTHNLIVDVPYFDNEVYDIPTAKIRYMKNLLRKKDVKKEPEVVDENNASIDEMPFHFLEMENLKCSICEETFDSSRSLRFHLRNHTNIGGPSNGPSKEPQKKPPKLLEEISRLPISTTVKCEVCSLTFGSLFALNLHMKHVHGFGIDPDEKEGNSKKSEVECDICDFTSERRDKVETHVKLEHKPEFACCYCSKICSSYNSFRMHIHNLHGMNDYKDENLFQCTECHKRFSKLDSMEKHRESKHLNGVKIDHRCQVCGVIYPNSIKLQMHFENHHHKELEHFITNVLEVKATPPIIKSEPIDEATENDKIETDEGNEILDPFFCMLKNVVQIPNDNENDEPATKKMKIDEDLEEKRLPIPPRRRSIANDNDRVEYLNHLQCKNGLFRCGLCPKISKTRRYMLRHLKHHKEIPTYKCSQCSAKFVFKKKFDRHVRNHHSENGENVEEDENVNEEVVSKEQEVVKIVNVDEHPKFQELSSPKVDSNDEFDDQIKCEICKMTFKLTIILNRHNSIWHGEGNPNKHLTMMEQKEKKGSSKSELNLKLLRCKFCSEAFIKPHELEAHTKDVHLRIERIFIKSQNLSQKLMMSQKLQATLTISLVKDVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -