Cmar009828.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000002.1:1157414-1159576[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.36 27 5.7 8.7 1 23 225 248 225 248 0.94 2 10 3.9 2.9e+02 2.5 0.7 6 23 258 275 255 275 0.94 3 10 0.0003 0.022 15.4 2.4 1 23 282 305 282 305 0.98 4 10 0.01 0.77 10.6 2.5 1 23 312 334 312 334 0.98 5 10 7.8e-05 0.0058 17.3 1.9 3 23 345 366 343 366 0.93 6 10 5.6e-08 4.2e-06 27.2 1.2 1 23 372 394 372 394 0.98 7 10 0.00016 0.012 16.2 1.3 2 23 401 422 400 422 0.97 8 10 0.0081 0.6 10.9 0.6 3 20 429 446 428 449 0.91 9 10 0.028 2.1 9.2 4.7 1 23 455 477 455 477 0.97 10 10 0.046 3.4 8.5 5.1 1 23 483 506 483 506 0.96
Sequence Information
- Coding Sequence
- ATGGATTGGCAAAACTGGTGTCGACTTTGTGGTAATAATGAGacaattataaaaattgaacCAGAAGTTGAGGAACTGGCTTCGAAATTAAAtATACTGGagcataattttaaaatttgtgtAGAATGCAATGCTTTCCTAAGcgaaatttatcaatttgtAGCAAGAAGCAAATTGATTGATGCGATGTTTTTAGAACTTGAACAACTTGATCATCAACAACCAGTCGATCAATTCACAACAATTGCAGAAGAAAATGTCGAGacaaaaaattttacaaaCGAATTTGAGTATGATAAATCAATAGCCGATGTAAGACAAAGATTTGGCCTTAAACCACTTGAAATGCCTGTTGAAATGTTAGCAACAACTTTATTTGAGGAACCAAATGTTGTTATTGATTCagtggaaattaaattagaaagtGAATTAGGTGACTTCGAGGCTAATGAATTATTATCAGAAGATCAGGATCTAAGTGAAAgttcagaagaagaagaggaTAATTCTGAGATTGAGCAATTAAGTGATTCAAAATTCAAGAGACACAAAGATTCCATTCGATACCAAGACGGGGAAGGCGATGAAGGAGAAGATTCGACAGATTCGGGTGGTGAAGAACGGAAGAATGCtaaaaagtatcaaaaatcAGAAGCAGAGAAACTTTATGaCTTTGTTTGTCATATTTGTAAAAAGGAATTTGATAAAATGTGCTTCCTCACGAGACATTGCCGTAGAGTTCATAAATGTATACCTCAAGTAAACTGCTTTTGTGGAAAGCAACTTGGTACCTGGAAACGTCTTCTTATACACAAACAACTTCATTTCCCTGAGAAAGTTGATTACGAATGTAAAGAGTGCAAATTAACTTACAAACTGAAAGCATCGTACGAGAGTCATATGAAGAAAAAGCATGGACCAGACGCTAAGAAGTTTGTTTGCAGTCAATGCGCAAGATGTTTCAAAAATTCCCGAATCTTAGCATCTCATGAGAAGACACATTTGCCTGATGATCTTAAATTAACCCATCTTTGTgttatttgtaataaaaagtttgttaacaagaattcattaaaatccCACATCACGAGCGTCCACGAAATGGCGAATCTTTACACATGTGAAACATGCGGGAAAGGCTTTTCAACCAAATCAAACCTTAAGTCTCATCTTTATGTGCATTCAGACAAGAAAGACGTTCAATGTGATGTTTGTTCAGCACGATTTAAGAACATGGACAGTCTtagaaagcataaaaagtcACATTTAGAAAAGTCACAAGTTTGCATAATTTGTGGCAATGTTTATAGAaatcgaaataatttgaaagctCACATGgtTTGTCACTCGAATGTCAAAGCTTTTCAATGTACGTTTTGTCCGAATTCTTATAAAAGAtcaaaagatttgaaatgtCATTTGAATCTTCATACTGGCGAACGTCCATATCAATGTCAGTTCTGCTCAAGAACTTTCGTCAACGGGTCAAATTGTCGTAAACACAAACTCAAAGATCATCCTGAAGAGCTTGCTGCATTCGAATCTATTCATGGTCGTGGAAAATCAGCAGTTCAAGCACTCCAAACAATTCACACACCGTAA
- Protein Sequence
- MDWQNWCRLCGNNETIIKIEPEVEELASKLNILEHNFKICVECNAFLSEIYQFVARSKLIDAMFLELEQLDHQQPVDQFTTIAEENVETKNFTNEFEYDKSIADVRQRFGLKPLEMPVEMLATTLFEEPNVVIDSVEIKLESELGDFEANELLSEDQDLSESSEEEEDNSEIEQLSDSKFKRHKDSIRYQDGEGDEGEDSTDSGGEERKNAKKYQKSEAEKLYDFVCHICKKEFDKMCFLTRHCRRVHKCIPQVNCFCGKQLGTWKRLLIHKQLHFPEKVDYECKECKLTYKLKASYESHMKKKHGPDAKKFVCSQCARCFKNSRILASHEKTHLPDDLKLTHLCVICNKKFVNKNSLKSHITSVHEMANLYTCETCGKGFSTKSNLKSHLYVHSDKKDVQCDVCSARFKNMDSLRKHKKSHLEKSQVCIICGNVYRNRNNLKAHMVCHSNVKAFQCTFCPNSYKRSKDLKCHLNLHTGERPYQCQFCSRTFVNGSNCRKHKLKDHPEELAAFESIHGRGKSAVQALQTIHTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -