Cmar002998.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- L
- Assembly
- GCA_900005825.1
- Location
- CVRI01000006.1:869475-874094[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.9e-05 0.0014 19.2 2.0 1 23 64 86 64 86 0.98 2 17 0.079 5.9 7.8 4.2 1 23 92 114 92 114 0.98 3 17 3.8e-06 0.00028 21.4 3.1 1 23 120 142 120 142 0.99 4 17 4.6e-05 0.0034 18.0 0.5 1 23 148 170 148 170 0.98 5 17 0.19 14 6.6 0.3 2 23 226 249 225 249 0.89 6 17 0.0027 0.2 12.4 1.9 1 23 272 295 272 295 0.95 7 17 0.081 6 7.8 0.6 1 23 364 386 364 386 0.95 8 17 4.5 3.3e+02 2.3 0.2 1 23 413 436 413 436 0.92 9 17 0.0041 0.3 11.9 0.4 1 23 440 463 440 463 0.91 10 17 0.37 28 5.7 0.5 1 23 466 489 466 489 0.93 11 17 1.4 1e+02 3.9 4.1 2 23 493 515 492 515 0.95 12 17 0.021 1.6 9.6 2.6 1 23 548 570 548 571 0.96 13 17 0.14 11 7.0 0.3 3 23 750 773 748 773 0.77 14 17 0.042 3.1 8.7 0.0 1 23 779 801 779 801 0.95 15 17 0.15 11 7.0 1.5 2 23 808 829 807 829 0.97 16 17 0.089 6.6 7.6 0.0 3 23 944 964 942 964 0.96 17 17 4.9 3.7e+02 2.2 4.1 2 23 974 995 974 995 0.94
Sequence Information
- Coding Sequence
- atgaaaatttatgaagtgCTTCATGATGGTAATAAAGATTACCATTACCGCgAACTTTACTCTTCACATACATCAATCAGTTTTCCTTCATCAAACAACAGCACATCTGAAATGGAGACCAACGAAGCTGATGTTGATGGAGTCGATAAGAAAGAAcgaaaagataaaacaaaattcaaaaattgttcttaCAAATGTCAATTCTGCGAGAAATCGTTTCCACGTTTGGGATATTTGAAGAAGCACGAACAGAGTCATGAAGATTACATGCCCTTTAAGTGTCCAGTTTGTCTTCGACTATTTAAACATAAGAGATCAAGGGACCGACATTTGAAGCTTCATACTGGTGACCGACGATACAAATGTCTTTATTGTGAATCAGCTTTTTCAAGAagcgaccatttaaaaattcatatgaAGACACACGACAGTAAAAAAGCtttccaATGTAGCTTCTGTAATCGTGGATACAACACTGCAGCTGCATTGACTTCTCATATGCAGAATCATAAGAAACAATTAGAAAATCGAGGTCGTAACGATTCACCATTCAATTTCAGTTTGAAATCGTCGGAATCTTCGTCGACTTCAATGATggataagaaaagattttcagatTTAATTTCACCGAAATCATTTAAATCTGAAGGACATTCCGAATTGAGGTCCTTAATTCGATGTTTCTATTGCACGAAGTCAAACTTCGTATCTTTGgatcaattaaatattcacattaATATCATGCACAGTCATAAAATTAGCAAAgataagagaaatgaaattgacaaaGAACAAAACGAGTTGAGTCCATTACATTCCTGTGAATTCTGTTTGATGAAATTCACCTCATctgataaattattaaaacatattAAAGCAATTCATGATGAGAAAAATGGCGAAAAAGTTTCAGTAAATTCTGAACTTTGTTCACTTGATATGCGAATCGATAACGGCAATAAATTCGATAATGATGACGAACAACCAACCGATTTAAGTCaaagattttcaaagaaaattaaaatcgaaaACTCATCCGTTTCAAAAGCATTCAAGCCACCAGTAAAATCACCGATTTCTTCAGAAGTCTTCTTATGTAATCAATGCAACGCATCGCTGCCGAATTTTGAGCTGTTTCGGCTTCATTTGAAAAGTCATTTGGAAGAGAATTACAAAATTCGGAGCAATGACCACCactttgaaatgaataatgCATTCTATCACAcgcaaaagaaattcatttgcCCGCAATGTCGAGATGTTGTGTTTGATAATCGTTTTGAATATGATCAGCATGTGGAGAAGCATTACACTGAGTTTTTATGCCGTGAATGTGACGATTCCTTCACCAAAAATGAAGACttacaaaatcatttaattgagAGTCACGTTTGCTTCAAATGTACGCTTTGCAGTGAAAGCCTCGAGTCGATTATGTCGCTGAAATTACATTTTGCATCTCGTCATTCCCACAAAAGGTGCTCGGCTTGTCACGAGGATTTCAGTTCAGACCGAGAATTTATGAGTCACATTCATTCAAAGCACAGCTCGTCAGATTTAATTCATTGTATATTCTGTCGTGTAACATGTTCATCCGAACTTGAGatgcattttcatttcttgtcaGCACATGTTAAACAGTTCCGTTGCCCAGCTTGTTCCGAatcatttcatgttgaatttcTTCTCGATCGACATCTTCAAACGCATCATTCTATTAATGATCCTCAATTGAGTGCTAAATATGCTGCTGAAAAAGAAATGGCATTGTCACATTTAAATCTGCAAAATTATCATCCATCGTTAATTGATAGCAATTATAAAGGCAAATTCTTAATGAACAATGAACCCAAACAATCTGATAATAGCTTAATGAGTGGACTtcactcaaatatttttgcattaaattcaatatcCAACCAATACACGAAAGGCATTGATCTTGCCTCTCTCCATGAAAGTCTCAATCGTGCACAGTCGACTTTGGAAGAAAGTCAAAATGTTCGAGTTAAGCAATTATTCTCGATGAATAATAATGGCGAGAAATCTTTCAACGACACTCAAAACGTTGCAAAAAGTCAGAACGCTTTGAACATAACTAATTTAGCCAATGACagaaacaacaataaaaatgcaaCTAATAAGGACAAAACTGATGCAACATCGCACTATAAAGAATTCGAGCCGACAACGGATAAGTCAGGTCAAAGCTTACACACAAGTTCAAAGTCTGGTGTGAGTTTGAAATGTGCATATTGTGAGGAACGTGACGATTTTAAGTCTAGAACTGAATTGGAAAATCATATGAAGATTCAGCACAACATCGCAGCTAAACATAAATGTTCGATTTGTGATGAAGTTTTACCATCCCCAGCCGTTCTCGCGGAACACAAATTGCAACATTGCAAAGTAATATcgggaaaatgttttcattgttcGGAGTCAATTAACGATGTCAACGATTTCAAGCAACATATTCAGAACcataacatgaaaaataaaacagcgTTGGAATTTCCTATACATTGCATTTGCTGTCACCAACTTTTAGCATCGGACTTTGAAATGAATCTCCATGCAAAGTTTCATACGAATTCAGCCAACACTATAAATGTCAATGACGATCGAACGTGTGCACTTTGTCTCAACATTATGGAACAGGCGAATATCAAGAAGATATGTAATTCATGCATGACAAAACATAACTTCTCGCTAAATTCGGTTCCAAAAAATCAACTGCAGCTTTGTAATTTatgcaagaaaaatattgaaattgaaaagttccaAGACCACTTGATTGAACATGAAATGGACAATGGAACAATAGCATGCGCTATATGCAGTTCAATCTTCACGTCAATAATTGGTCTAAAAGACCACATTCGTGAACATAATCTCATTGCTTCAGATCTCAAGGAAGTTTGCTCAAAATGTAATTCAAGATTTCTTTATCGCTCAGAGCTTTCTCATCATGTTCATGAACATGAATTGATGGAAAATCAAGGAAATGTagtaaagaatgaagaaagtgACGACGAGGAAGTCAAtaagataaaagaagaagatgaagacgatTATATAGAGATTGAAAAAGTTGTTGAGAATccaacttaa
- Protein Sequence
- MKIYEVLHDGNKDYHYRELYSSHTSISFPSSNNSTSEMETNEADVDGVDKKERKDKTKFKNCSYKCQFCEKSFPRLGYLKKHEQSHEDYMPFKCPVCLRLFKHKRSRDRHLKLHTGDRRYKCLYCESAFSRSDHLKIHMKTHDSKKAFQCSFCNRGYNTAAALTSHMQNHKKQLENRGRNDSPFNFSLKSSESSSTSMMDKKRFSDLISPKSFKSEGHSELRSLIRCFYCTKSNFVSLDQLNIHINIMHSHKISKDKRNEIDKEQNELSPLHSCEFCLMKFTSSDKLLKHIKAIHDEKNGEKVSVNSELCSLDMRIDNGNKFDNDDEQPTDLSQRFSKKIKIENSSVSKAFKPPVKSPISSEVFLCNQCNASLPNFELFRLHLKSHLEENYKIRSNDHHFEMNNAFYHTQKKFICPQCRDVVFDNRFEYDQHVEKHYTEFLCRECDDSFTKNEDLQNHLIESHVCFKCTLCSESLESIMSLKLHFASRHSHKRCSACHEDFSSDREFMSHIHSKHSSSDLIHCIFCRVTCSSELEMHFHFLSAHVKQFRCPACSESFHVEFLLDRHLQTHHSINDPQLSAKYAAEKEMALSHLNLQNYHPSLIDSNYKGKFLMNNEPKQSDNSLMSGLHSNIFALNSISNQYTKGIDLASLHESLNRAQSTLEESQNVRVKQLFSMNNNGEKSFNDTQNVAKSQNALNITNLANDRNNNKNATNKDKTDATSHYKEFEPTTDKSGQSLHTSSKSGVSLKCAYCEERDDFKSRTELENHMKIQHNIAAKHKCSICDEVLPSPAVLAEHKLQHCKVISGKCFHCSESINDVNDFKQHIQNHNMKNKTALEFPIHCICCHQLLASDFEMNLHAKFHTNSANTINVNDDRTCALCLNIMEQANIKKICNSCMTKHNFSLNSVPKNQLQLCNLCKKNIEIEKFQDHLIEHEMDNGTIACAICSSIFTSIIGLKDHIREHNLIASDLKEVCSKCNSRFLYRSELSHHVHEHELMENQGNVVKNEESDDEEVNKIKEEDEDDYIEIEKVVENPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -