Cmar009837.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000002.1:1021843-1024017[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0022 0.16 12.7 1.9 2 23 312 334 311 334 0.95 2 13 2.3e-05 0.0017 19.0 4.5 1 23 340 362 340 362 0.98 3 13 0.003 0.22 12.3 1.6 1 23 381 404 381 404 0.94 4 13 0.012 0.88 10.4 1.6 1 23 411 433 411 433 0.96 5 13 0.63 47 5.0 6.9 1 23 441 464 441 464 0.96 6 13 5e-05 0.0038 17.9 2.1 1 21 469 489 469 490 0.95 7 13 5.3e-06 0.0004 20.9 1.5 1 23 511 534 511 534 0.97 8 13 4.8e-07 3.6e-05 24.2 0.4 1 23 540 562 540 562 0.99 9 13 0.017 1.3 9.9 4.8 1 23 570 593 570 593 0.97 10 13 0.0036 0.26 12.0 0.1 1 23 600 622 600 622 0.96 11 13 1.8 1.4e+02 3.5 6.4 1 23 630 653 630 653 0.92 12 13 0.029 2.1 9.2 4.1 1 19 658 676 658 679 0.92 13 13 0.41 31 5.5 1.1 2 12 707 717 706 720 0.87
Sequence Information
- Coding Sequence
- ATGCCTTTGAAAGTCCTGAGAAAACCAGAATTGAATACCAAAGTCGTccttaaagatattttttccgACTTcaaaaattccaatgaaaaatGCCGCTTGTGCTTTGAGGAAGTTTTCGATCAAAATTCAAGAGTAAATGTAACAACTGACAAGAAAGACGAGATTAATATTCTCTTTCAAGTTTACTTGTCTTTGAATGAAAGAGAATCAGAATTTGTGTGCTCAAAATGTGAAAAcgaaataaacaatttacatCAATTCAAGAGGAAAATAAACGAaaaccataaatattttgagaagtTGAGCAGCCTGAAATATGACAATGCCAGCAATGAGAACTTCATAAAAACTGAACCAGAACTGTCTATATCAAAAGAATCTACTCTCAAAAAAGTCATACAAAAAACTCGTAGAGCGAAGCATAGAAAAATCTTCAAGCAGCTAGATTTGAATGTCAAAGTCGTccttgaagatattttttctgacttcaaaaatttcaatgaaaaatgcaGCTTGTGTTTCAAGGAAGTTTTCTATCAAAAGTCAAGAATACATTTGACAGATGATATAAAAGACAAGATCTATTCTATCTTGCAAATTAACTTCTCTGTGAATGGGTCAGGATCAGAATTTTTATGCTCAAAATGTGAGAACGAAATAAAGAACTTTCATCGATTTAAAGagatgataaatgaaaagcagaaatattttgaaaagtgTAGCAGTATGAAAAAGGACAAAGCCAAAAACTACGAACTTACATTAACATTCAATGAACATCTCGTAAAATCTGAACCGGAACTGACTATTGtcgatgaagttgaagaagaaacgtctgaatctgaaaatgaaaatcaaaatgattcaattgaaGATCATCTTTTGGAGCCAAACGTCACTGATCAGGAAATCCAAACAAGTTCTGGATTCGTTCCTTGCAACGTCTGTGGAAAACAATTCAAAGGCCACAAGAATCGAAAGCAACATTACCTGAGAGTACATGTTAATAAAAGACCTCATCAGTGTGATATATGTGGTAAAAGATTCCGACATCCATGCCTTGTTGCTGCACACATGAAAAGGcatagagaaagaaaaacaaaaaggcacagagaaagaaaaacaataaaggaaataaattacaaGTGCGATAGGTGTGAAAGTTCTTTCTTCAGTAACGGAGATTTACGAAAACACGAATTACAATTTCATAAAGATGATATTAAGCCTCATCAGTGTAATATTTGTGGTAGAAGATTTCTTGTACGTCGCAGACTTGATTTGCATATGGAGACACATAGAGAAAATAGAACAAAAGATCATCATTGCGATATCTGCAAGACTTCATACTTTCATATCGAAGCATTACATAGCCACATACTAAGATATCATGAAGATAAACCGTTTTCATGTACAAAATGtggaaaaagctttaaattagAACAAAATCTGAAAATTCATATATGCAATTTTTTTAAGGAATCATGTAAAAATCAACATGACATGTCAAACAAACAAGACCTTAAAAGTTTTCCCTGTGAAATTTGCGggaaattatttagaaatggTTCTCAACTCAAGCAACATCACAGAAGAGtgcatttgaaaattaaagcttACCAATGCGATATttgtgataaaagtttttatgttcGAAAAGATCTTGCCAGGCACATTGACACACATAGAGAAAACAGAACAAGAGATTATCATTGTTACATCTGTGAGaaatcatatttaaataaCGAAGGATTAAGGAAGCATGTAAGACGTtgtcatgaaaatattgaaaaaccGTATCAGTGTGATATTTGTAGTAAAAAATTTGATGCACGGTACGAAATTGCTGCACATGTTGACATCCATAGAAAATATAGAACAAGAGATTTTAATTGCGATATCTGCAAAACCTACTATTTCAATAAGATATTATTGCAACAACATAAATCACACTGtcatggaaataaaattttttcatgtgCATTTTGCGGGAGAACATTCAAAACGAAACGAGAACGAAAATCTCATTCTTGTAGttatttcaaaaaatcaaataaaaataataaaaaatggagTCGAACAAACTTAATCCTAAACCAGACAATTTCACAAAATACTCCATGTGAAATCTGCGGAAGAATATTCAAACATGTTTCATGTTCAAGCAACATATGA
- Protein Sequence
- MPLKVLRKPELNTKVVLKDIFSDFKNSNEKCRLCFEEVFDQNSRVNVTTDKKDEINILFQVYLSLNERESEFVCSKCENEINNLHQFKRKINENHKYFEKLSSLKYDNASNENFIKTEPELSISKESTLKKVIQKTRRAKHRKIFKQLDLNVKVVLEDIFSDFKNFNEKCSLCFKEVFYQKSRIHLTDDIKDKIYSILQINFSVNGSGSEFLCSKCENEIKNFHRFKEMINEKQKYFEKCSSMKKDKAKNYELTLTFNEHLVKSEPELTIVDEVEEETSESENENQNDSIEDHLLEPNVTDQEIQTSSGFVPCNVCGKQFKGHKNRKQHYLRVHVNKRPHQCDICGKRFRHPCLVAAHMKRHRERKTKRHRERKTIKEINYKCDRCESSFFSNGDLRKHELQFHKDDIKPHQCNICGRRFLVRRRLDLHMETHRENRTKDHHCDICKTSYFHIEALHSHILRYHEDKPFSCTKCGKSFKLEQNLKIHICNFFKESCKNQHDMSNKQDLKSFPCEICGKLFRNGSQLKQHHRRVHLKIKAYQCDICDKSFYVRKDLARHIDTHRENRTRDYHCYICEKSYLNNEGLRKHVRRCHENIEKPYQCDICSKKFDARYEIAAHVDIHRKYRTRDFNCDICKTYYFNKILLQQHKSHCHGNKIFSCAFCGRTFKTKRERKSHSCSYFKKSNKNNKKWSRTNLILNQTISQNTPCEICGRIFKHVSCSSNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00347046;
- 90% Identity
- iTF_00347046;
- 80% Identity
- -