Cmar008073.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000037.1:892152-894480[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.39 29 5.6 0.5 2 16 11 25 10 27 0.84 2 12 6.6e-05 0.0049 17.5 0.7 1 23 252 275 252 275 0.97 3 12 3.5 2.6e+02 2.6 0.6 3 23 310 333 308 333 0.81 4 12 7.5e-06 0.00056 20.5 3.1 2 23 362 384 361 384 0.96 5 12 2.6 1.9e+02 3.0 0.1 3 13 427 437 426 442 0.82 6 12 2.2 1.6e+02 3.3 0.3 2 23 464 485 463 485 0.96 7 12 0.051 3.8 8.4 0.2 1 21 586 606 586 607 0.94 8 12 0.00048 0.035 14.8 0.6 1 21 613 633 613 634 0.95 9 12 3.2e-06 0.00024 21.6 0.9 1 23 641 663 641 663 0.98 10 12 2.9e-05 0.0022 18.6 0.1 1 23 669 691 669 691 0.97 11 12 0.011 0.85 10.4 0.9 2 23 697 719 696 719 0.93 12 12 3.8e-06 0.00028 21.4 3.8 2 23 732 754 731 754 0.96
Sequence Information
- Coding Sequence
- ATGGAATCACGCTTAGGATTGGCtttcaaaaaatgttatttctgtgggaaaaatttcaacaagCTACAACTTCTTGAAATCAATGGAAATATTGTATCTGTCAATGATGAAGACATTGTATTTGAGGATTTAATTTTTGACACTTGTTTCATAAAGATTGATTCTTCAGTAGTAAACTATATCTGCAATGAATGCAATTCAAATTTgctatcatttcatttcttcaagaGAGAAGCAAAGAAATATTCCAACTTTCGAGAACATATCGCGAAACTTGAAATCTTGTCAAAAGctgaaagtttcttaaatgaaattgaaaatttagatGAAGTGCATACTATTCAAGATGAGATGAAATTCAGCATTTCATTGGGAAGTGAAGTCGATAAATCAGAAGGCAATTTGAAGGAGCATGAAGATGACGTTGTTGAGTTCATTGAGTATTGTGTTGAAGCAATTTCTGATGAATCAAATGCTTCACATTATCAAACAAATCACAATATTTCTAATGAAACGTTGTCGACTGACATGAATGACTTACAAGCGTTTAATGATGAAGATTCAACTGTTGCAACTGAAATCACTAACGAGATTGGTGAGAACTTCACAGATTCAACACTTATGAGTTTGTCTGATTCGTCCAATGTCAGAAAACGTAAACTCAACACTTTTGATGATCTCTCGGAAGAACAAATTTCTTGGGTACGAAAACAAGCTCaacaaagtgaaattaaacatGGAAGCAAAAGAATTTACAAATGTGCGTTATGTAACGTTGTCTTGTCAACTCATTCCAGTCTTACGCGACATATTCGTGATGTTCATGTTCTTAAAGGTAAGAACAATGAGAAGGAAATTGTCAAAGAAGAAGCGAATAATAGCAAAATTGAAATCGAAACTTCAACTGGAAATGAATTCGTTTGGAAATGTCAACGATGTGCAAGCGACCGAATTTATCGATCTCTGCAAGCTTTCAAACTTCACTTAAGGATGACGCATCTCCGAGCAACTAAGTTAGACACAGCTTTCATTGCATCATGTAAAGTGTCAATTGAAGAGAatggaatgaagaaaaatgctTGGAAATGTCCGGAATGTCAGAGAATATTTAAACATCGCGACACTTTACGACATCACATTAAAATTGAACATCCAAACATGGATGAAATTGAAGCCATCAGACAAAATGATGagcaaaagaaagtttcatcgTCAACCCattcaacaattcaatttgctgaaagtttcaaagaaaatcaaacaaaattgtCAAATAATTGTGATGAATGTGGATTGAAGTTTGCTCCATCAAAGCAACAAATGAAGCCAAAACTTCACAATGAATGTCATGAAATGTTCAAGATTTTATCACCAAATCTTCCACGAAGTAAATGTGAATCTTGcttaatgatatttaattcCGGAGAGACTTTGTATGAGCACTTTCAAATTCATGACAATCTTGATGACATTCAACCAATTCGTGGCGAAAATTGCTTAGTTCAATATGGTGCAACTTTCTATAAAGATCCGAGTGGAGATGCTGATGACAGTGTCGATGAATTATCATGGAAATGTGGACATTGCAATGTcagatatttcaatgaaaatgattgCGTTTCACATGTTATGCTTTTACATACGCCATCGATTCATTGTTTCATTGATAATCGTGAATTTAAAGGAGCAACCGGTCTAAGCAAATTCATGCAAcatatgaaaaacaaacattttgaaCTCTTTCCAGATCTCACATATCCATGTGGAAATTgtcatgaagaattttcatcgatTTATGAGAAACTCGCTCATCAGAAGATTTGTCCaagtaagaaatttcaatgCGATAATTGTGGCAAACGATTTCTAGTGAAACATCAACTGCAAGCTCATATCCTATATGAACAAGGACTGACAGGCTTCAGTTGTGAGATTTGTGGCAAGCGATGCATATCGTTGAGTGATTTGAAAATCCATCAGAATGTTCACTCATCAGCGAGACCTTACGAATGCTCAATTTGCccgaaaacttttaaaacgcCAGCTGCTCGTAGCACTCACATGGAAGGTCACACACTTGAAGGAGTTACTTGTGAAGTTTGCGGACAAAAACTCGCCAACAGAACTCTTTATCAACGtcacaaaaaatttcaacacgACAAAGATTTTCGTGACACTCAAATGGAGAAGAACAAATGTGATGTGTGTGGGAAATCATTTATAAGGCTAGGGCATTTAAGACAACACATGAAACACAATCATGGaatgtaa
- Protein Sequence
- MESRLGLAFKKCYFCGKNFNKLQLLEINGNIVSVNDEDIVFEDLIFDTCFIKIDSSVVNYICNECNSNLLSFHFFKREAKKYSNFREHIAKLEILSKAESFLNEIENLDEVHTIQDEMKFSISLGSEVDKSEGNLKEHEDDVVEFIEYCVEAISDESNASHYQTNHNISNETLSTDMNDLQAFNDEDSTVATEITNEIGENFTDSTLMSLSDSSNVRKRKLNTFDDLSEEQISWVRKQAQQSEIKHGSKRIYKCALCNVVLSTHSSLTRHIRDVHVLKGKNNEKEIVKEEANNSKIEIETSTGNEFVWKCQRCASDRIYRSLQAFKLHLRMTHLRATKLDTAFIASCKVSIEENGMKKNAWKCPECQRIFKHRDTLRHHIKIEHPNMDEIEAIRQNDEQKKVSSSTHSTIQFAESFKENQTKLSNNCDECGLKFAPSKQQMKPKLHNECHEMFKILSPNLPRSKCESCLMIFNSGETLYEHFQIHDNLDDIQPIRGENCLVQYGATFYKDPSGDADDSVDELSWKCGHCNVRYFNENDCVSHVMLLHTPSIHCFIDNREFKGATGLSKFMQHMKNKHFELFPDLTYPCGNCHEEFSSIYEKLAHQKICPSKKFQCDNCGKRFLVKHQLQAHILYEQGLTGFSCEICGKRCISLSDLKIHQNVHSSARPYECSICPKTFKTPAARSTHMEGHTLEGVTCEVCGQKLANRTLYQRHKKFQHDKDFRDTQMEKNKCDVCGKSFIRLGHLRQHMKHNHGM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -