Cmar014293.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- ZNF217
- Assembly
- GCA_900005825.1
- Location
- CVRI01000054.1:3791714-3794073[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00085 0.063 14.0 0.7 3 20 193 210 192 212 0.94 2 11 2.2e-06 0.00017 22.1 0.3 1 23 287 309 287 309 0.97 3 11 0.019 1.4 9.8 0.5 1 20 315 334 315 336 0.92 4 11 0.1 7.7 7.4 2.9 3 20 411 428 410 430 0.92 5 11 5.1 3.8e+02 2.1 1.6 12 23 450 461 440 461 0.78 6 11 0.0046 0.34 11.7 0.2 3 23 470 490 468 490 0.96 7 11 0.00017 0.012 16.2 1.1 1 23 496 520 496 520 0.97 8 11 3.7e-06 0.00028 21.4 1.8 1 23 527 549 527 549 0.98 9 11 0.0019 0.14 12.9 0.8 3 23 555 576 553 576 0.97 10 11 0.00016 0.012 16.3 0.8 1 23 579 601 579 601 0.97 11 11 2.2 1.6e+02 3.2 1.5 2 23 610 634 609 634 0.80
Sequence Information
- Coding Sequence
- ATGTCCAAAGCTCCAAATAATTCTCTTCCTAGTGTTCTGATCATTGAGGCTGAAGACGgcaatgtttttattgtgGAAAGTATAGATTCTGAGACGcaagttgagaaaattttaaaaacagaaaagacCCAAAGAGTGCCTCGTAAACaatcaaaagttgaaataaCTTCGCGTGAATTGTCTCCAATCGACAACAAatCAGAGttaaaagaagatgaagaagaaatcataatCGAAGAGTACCTTGATGAGTATTTCGAAGATGAAGGAGCTACagcaataatttcttttgttgactCAAATATTGAGCAATCTTCATCACAACAAGAATTGCATTCAAAAATAGAGataaaagatgaagaattttatgaaatacCTGCTGCAATATTGGATCATCAGTACATGATTACTGATCCATCATTGAATCGAAATATTAATTCTGAATGTTCAGAAAACCATTCTgattatgaaacatttaattacaaCGAAAatcgtaaattaaaattaaaaaatgagagaaaggATGACCTCAAACCTGTAAAACATAAACTTCGTCAACTTACAGGAAAAGCTGCATGCAAATACTGCGACACAATATTCAATTCTAAAGAATCTTTGAAGATGCATGTTTGCGCATATTTACAATGTGACCCTAAAAACTTTATCTGTCGCATTTGTTCCAAAGAACTTATACAatccataaaatttattcctccaagaaaacttcaacttGATCAACAACAACTTGAATTGTTAGAAAGCAATGATGAGACAAAGGATCCTGTTTTGGATGAGTTTACTGGCCTGATTGTTAAATATACtacacaaaagaaaagataTCCTCGAAAGACCGGAAGATTTGAATGCGatTTATGTGGTCGAGTGTTCACAACTTTGAAAAGTCTTACAATGCACATGGATTTACATACAAaTTCTCATCGATTTGTTTGTACAACATGTGGTGAACGATATATCACCCATAGTGGAATTGCTAAGCATGCTTGCATGAATAAAAAGAGACGCCGACCAGAAGTTGACTTCATGGATAAAGAAGCTTATGTTGTGTCCATGGATTGTTCTCCTTTGTTAGCAGGATTTTCGATTGTGCTCAAAGATGGTCGAGCTGCATTTTTGACgtcaaataatttgaaatttgatccAAATCATGCTTGCATGAATAAAAAGAGACGCCGACCAGAAGTTGACTTCAGAATTTTCGATGTCCGTCATTGCAAATATTGCGgcttttcatttccttcttttgaagaaaataaagccCATACTTGTCAATATCAATTTCCTGATGATCCGAAAATGTTTCGGTGTCGGTTTTGCTTGTTGGATATGTCGAAGAATTCCTACAATAAGCATATGAATCGTCATCTTGAGCCTGAGAAAGAATGGATTTGTGTTTATTGTAGTAAGAAGCTTTCAGATGAAGTTAGTTTGAATCTTCATTTAACGACTCATACAGGAGACAAACCTTTTAGATGTCCTTACGATGGATGTGAACaaagttttataaacaaacaaCTTCTCACTCGTCATAGTCGCTTTCATGGCGTTGATATTCCTGTGTATGCTTGCAAAATTTGCAACAAAGAAGTTGCgtcaaaatatcatttaaagaCTCATATGAAGATACATGAAGACATATTCGGATGCCAATTGTGTAAAACAGAATTTGATAGTAAGGATTTACTTAAGGAGCATTATCAAAAGGATCATTTACCGTACCCTTGTACATTCTGtgacaaaacttttgttcttcCAAGATACTTAAAAATGCACGAGAAACTTCATACTCCAACAACTCCAAAGCCTCACAAATGTGAGTTTTGTATCTCAAATAAGTCATTTAGTAAACTTGCTTTGCTTCTCAATCATGTCTATAAAGTTCACGCTGAATTATTTGATGAGTGGAAGATTCAGCATCCagaattgtttaaataa
- Protein Sequence
- MSKAPNNSLPSVLIIEAEDGNVFIVESIDSETQVEKILKTEKTQRVPRKQSKVEITSRELSPIDNKSELKEDEEEIIIEEYLDEYFEDEGATAIISFVDSNIEQSSSQQELHSKIEIKDEEFYEIPAAILDHQYMITDPSLNRNINSECSENHSDYETFNYNENRKLKLKNERKDDLKPVKHKLRQLTGKAACKYCDTIFNSKESLKMHVCAYLQCDPKNFICRICSKELIQSIKFIPPRKLQLDQQQLELLESNDETKDPVLDEFTGLIVKYTTQKKRYPRKTGRFECDLCGRVFTTLKSLTMHMDLHTNSHRFVCTTCGERYITHSGIAKHACMNKKRRRPEVDFMDKEAYVVSMDCSPLLAGFSIVLKDGRAAFLTSNNLKFDPNHACMNKKRRRPEVDFRIFDVRHCKYCGFSFPSFEENKAHTCQYQFPDDPKMFRCRFCLLDMSKNSYNKHMNRHLEPEKEWICVYCSKKLSDEVSLNLHLTTHTGDKPFRCPYDGCEQSFINKQLLTRHSRFHGVDIPVYACKICNKEVASKYHLKTHMKIHEDIFGCQLCKTEFDSKDLLKEHYQKDHLPYPCTFCDKTFVLPRYLKMHEKLHTPTTPKPHKCEFCISNKSFSKLALLLNHVYKVHAELFDEWKIQHPELFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -