Cmar010162.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000002.1:1016786-1020896[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.44 33 5.5 0.2 5 23 224 243 223 243 0.89 2 21 0.16 12 6.8 1.9 1 23 250 272 250 272 0.95 3 21 0.13 9.5 7.1 9.4 1 23 280 303 280 303 0.94 4 21 0.033 2.5 9.0 2.0 1 20 308 327 308 329 0.92 5 21 0.00018 0.013 16.1 0.5 1 23 341 363 341 363 0.98 6 21 2.3 1.7e+02 3.2 5.2 1 23 371 394 371 394 0.92 7 21 0.00097 0.072 13.8 3.5 1 21 399 419 399 420 0.95 8 21 0.00036 0.027 15.2 4.7 3 23 434 454 432 454 0.96 9 21 0.0017 0.13 13.0 0.5 1 23 460 482 460 482 0.99 10 21 0.3 22 6.0 11.7 1 23 490 513 490 513 0.94 11 21 0.004 0.29 11.9 2.4 1 21 518 538 518 539 0.95 12 21 0.00029 0.022 15.5 1.4 1 23 560 583 560 583 0.97 13 21 0.00082 0.061 14.0 5.2 3 23 591 610 590 610 0.97 14 21 0.62 46 5.0 8.5 1 23 618 641 618 641 0.95 15 21 0.00076 0.056 14.2 1.3 1 23 648 670 648 670 0.96 16 21 0.0012 0.089 13.5 1.8 1 23 678 701 678 701 0.94 17 21 0.052 3.9 8.4 3.7 1 17 705 721 705 726 0.90 18 21 4.8e-05 0.0036 17.9 2.2 2 23 754 775 753 775 0.96 19 21 1.4 1.1e+02 3.8 3.3 1 23 785 807 785 807 0.75 20 21 0.012 0.88 10.4 9.2 1 23 815 838 815 838 0.97 21 21 0.0056 0.42 11.4 0.5 5 21 846 862 844 863 0.91
Sequence Information
- Coding Sequence
- atGCCGCTTGTGCTTCAAGGAAGTTTTCGATCAAAAgTTTACTTGTCTTTGGATGAAAGAGGATCAGAATTTGTGTGcttaaaatgtgaaaacaaaataaacaatttacgTCAGTTCAAGAGGAAAATAAACGAaaaccataaatattttgagaagtTGAGCAGCCTGACATATAACATAGCCAACAACGAGAACTTCATAAAAACTGAACCAGAACTGATTTTATCAAAGGAATCTACTCTCAAAGAATTCATACAAAGAACTCGTAAGGCGAAGCatagaaaaaattttaataagctAGATTTGAATGTCAAAGTCGTCctcgaagatattttttctgacttcaaaaattccaatgaaaaatgtaGCTTGTGTTTCAAGGAAGTTTTCTATCAAAAGTCAAAAATACATTTGACAGATGATATAAAAGACAAGATCTATTCTATCTTGCAAATTAACTTCTCTGTGGGTGGAACAGGATCAGAATTTTTATGCTCAAAATGTGAGAACGAAATAAAGAACTTTCATCGGTTTAAAGAGATGATATATGaaaagcagaaatattttaaaatgttcagcAGCATGAAAAAGGATAAAATCAACGAGGAACTTACGTTGACATTTAATGAGCAACTCGTAAAATCTGAACCGGAGCTGTCTATAAGCTCGGAGTGTGAAAGTTCTTTCTTCAGTAACGGAGATTTACGAAAACACGAATTACAATTTCATAAAGATGATATTAAGCCTCATCAGTGTAATATTTGTAGTAGAAGATTTCTTGCACGACGCAGACTTGCTATGCATATGGACACACATAGGGAAAATAGAACAAAAGATCATCATTGCGATATCTGCAAAACTTCTTACTTCCATAAGGAATCATTACGACAACATATATTATATTGTCATGAAGATAAACCGTTTTCTTGTACATCATGtggaaaaagctttaattggAAACGGGGACTGAAAATCCATACttgtaattatttcaaaaaatcaGTACGTTCAactaaaaaatatgaatgtgatttttgtggaaaaatgtttcaagtaCAACGCAGACTTGCTATGCATATGGACACCCATAGAGAAAATAGAACAAAAGATCACCATTGCGTTGTCTGTGAATCGTCTTTCTTCCATATGGAATCATTGCGAAATCATATATTCCAAAATCATGAAGTTAATctgttttcatgttcattatgtagaaaaactttcaagttgaagagaaatttgGAGTCTCACATATGTCGTTATGTTCAAGAATTAAATGACAGCCAACAATTTACTCATTGCCAAGtttgtggaaaaatattcaaatatgcCTTTAGACTTAAACACCACCAGAGAGTACATTTGAATTCTAAACATTATCAGTGCGATATTTGTGGTAAAGAAATGATGAAGCGGTCCCGTGTAGTTCGTCATATGAACACacatattgaaaaaaaaagaagagatcATCATTGTGATATCTGCAAAACTTCTTACTTTGATAAACATTCATTGCGAAAACATATATTACATTGTCATGAAGATAAACCGTTTTCATGTACATCATGTGGAAAAAGTTACAAATTGGaacaaaatcttaaatatCATATATGCAATTCTGTCAAAAAATCATATAAAAGTCAACATGGTTTGACAAACAAACAAGATCAGAGGAGTTTTCCGTGTGACATCTGCGggaaaatattccaaaaagGTTTTCAACTCAGGGAACATCATAGAAAAGtgcatttgaaaattaaaacgaaCCATTGCAAAATttgtgataaaagttttaatgctCGACATTTTGTTAAGCACATGGAAACACATAGAGAAAACAGAACAAGAGATCATCATTGCCATGTCTGTGAGAATTCTTATTTTGATAAAGATGGATTAAGAAGCcatttaaaaaattgtcatgaaaattttgaaaaaccTTATGAGTGCGATTTTTGTggtaaaaaattcaataaacgACACGAAGTGGCATCACATGTGGAACTCCATAGAAAATATAGAACAAGAGATTTTAATTGCGATATCTGCAAAACCTCTTATTTTAATAAGGGATTATTACAAAATCATAGATTATACTATCATGGAAAAGGATTCTCGTGTACATTGTGTGGGAGAACTTTCAAAATGAAGCGAtcacttaaatttcattcttgtaGTTATTTCaaggaattaaataaaagaaagtatgtggattcaaaaaaaattaatcttcaagGCCAGACAATCTCCCAATATACTCCATGTGAAATCTGCGGAAGAACATTCAAGCATGTTTCAAGGTTCAAGCAACATATGAAAGGGCattcgaataaaaataaaaataaaaaaccttATGATTGCGAcatttgtgataaaaaatttttttgtcgatctaaaattatttttcacatgGAGACTCATAGAGAAATTAGAGAGAAGGATTATCAATGCCATATTTGTAAAAACTCTTACTTCCATAAGAGATCATTACAACACCATATGTTTCGAGtccatgaagaaaaaaagtttccatgCGATtgtggaaaaattttcaagtcgGAACGAAATCTAGAATCTCATACTTGTCGTTATTTcaaattgatgaaaacaaaCGAACTCCCGtattga
- Protein Sequence
- MPLVLQGSFRSKVYLSLDERGSEFVCLKCENKINNLRQFKRKINENHKYFEKLSSLTYNIANNENFIKTEPELILSKESTLKEFIQRTRKAKHRKNFNKLDLNVKVVLEDIFSDFKNSNEKCSLCFKEVFYQKSKIHLTDDIKDKIYSILQINFSVGGTGSEFLCSKCENEIKNFHRFKEMIYEKQKYFKMFSSMKKDKINEELTLTFNEQLVKSEPELSISSECESSFFSNGDLRKHELQFHKDDIKPHQCNICSRRFLARRRLAMHMDTHRENRTKDHHCDICKTSYFHKESLRQHILYCHEDKPFSCTSCGKSFNWKRGLKIHTCNYFKKSVRSTKKYECDFCGKMFQVQRRLAMHMDTHRENRTKDHHCVVCESSFFHMESLRNHIFQNHEVNLFSCSLCRKTFKLKRNLESHICRYVQELNDSQQFTHCQVCGKIFKYAFRLKHHQRVHLNSKHYQCDICGKEMMKRSRVVRHMNTHIEKKRRDHHCDICKTSYFDKHSLRKHILHCHEDKPFSCTSCGKSYKLEQNLKYHICNSVKKSYKSQHGLTNKQDQRSFPCDICGKIFQKGFQLREHHRKVHLKIKTNHCKICDKSFNARHFVKHMETHRENRTRDHHCHVCENSYFDKDGLRSHLKNCHENFEKPYECDFCGKKFNKRHEVASHVELHRKYRTRDFNCDICKTSYFNKGLLQNHRLYYHGKGFSCTLCGRTFKMKRSLKFHSCSYFKELNKRKYVDSKKINLQGQTISQYTPCEICGRTFKHVSRFKQHMKGHSNKNKNKKPYDCDICDKKFFCRSKIIFHMETHREIREKDYQCHICKNSYFHKRSLQHHMFRVHEEKKFPCDCGKIFKSERNLESHTCRYFKLMKTNELPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -