Cmar006575.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- WDR44
- Assembly
- GCA_900005825.1
- Location
- CVRI01000069.1:177608-187647[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0012 0.09 13.5 0.5 1 23 972 995 972 995 0.95 2 12 3.8 2.8e+02 2.5 3.3 1 23 1115 1137 1115 1137 0.97 3 12 0.0097 0.72 10.7 3.7 2 23 1140 1161 1140 1161 0.97 4 12 0.019 1.4 9.8 1.6 1 23 1167 1189 1167 1189 0.96 5 12 0.00032 0.024 15.3 2.1 2 23 1196 1218 1195 1218 0.95 6 12 0.0097 0.72 10.7 0.3 5 23 1231 1249 1230 1249 0.97 7 12 5e-05 0.0037 17.9 2.6 2 23 1255 1277 1254 1277 0.95 8 12 0.11 8.5 7.3 0.1 2 23 1290 1310 1289 1310 0.97 9 12 0.00012 0.0092 16.6 2.0 1 20 1317 1336 1317 1339 0.92 10 12 0.00062 0.046 14.4 0.2 1 23 1347 1369 1347 1369 0.98 11 12 1.5e-05 0.0011 19.5 2.3 1 23 1375 1397 1375 1397 0.97 12 12 6.1e-05 0.0045 17.6 3.0 1 23 1403 1425 1403 1425 0.98
Sequence Information
- Coding Sequence
- caacaacaacaacaacaacaaccactgcaaaataatttcactttagCAAAACGTAATTCATTAAACAACAGTAACAATAATAGTAAtcattataataataataataataataacatcaacaacacaGTGTTATTAAATAATCGTCCATATCGATTAACACTCGATCCACCTCAAACGGTCACAGCATCACCACAACCATCAACCTCGACCTTCCTCAACTCAAATGGAAATTATGGAACGCGTCCTTCAACTAACAACAATAGCAATGGAGAGATTTTTGATAACAAAGGACAAGCTTTTCGATGTATACAAAATACGGAACAGAAGAATATCATGATTGTTAATACAAGTAGTACacaattcattcaacaaacaCTCCCGGTAAAGAAGCAACAATCAACAGCAATTGAACTTCATCCTGTCTTTATCGATAGCAATGGAATgccaataaattcaaattcagTTCCAAATGCAATATCAATTATTCCACGATATACAAGTGAGAAGTATTCAGGTCCACCGCCTTCGTATAGTACAGCCATCTCATCCGTTACCAACACAATAAATGATAAGCCGCGAGTCATTGATCTCACACAAACACCCACAACATCAACTATGAAAATGATGGAGAAGGCGAATAGCtgtaataataacaaaaatagtCGAATGACGACGACGACCTTGAGTGGCAACGGCGCAGAGGAGAATCGCCATTTAATGATAGCAACACCACAAAAGATTTTACAATATACGCAAACAGAGAATGGCGATTTTAtgataacagaaaaaataatgtCACCACAACAGCAGCAGCGATCATCTTCATTGCATAAAAAGGATTCAAACGGAAAAAGTAATAATAATGATTACACGATAAAGTTTCTTGATGTTGATAATCAAATCACATTTGACATAACAGGTGACGaggaagatgaaaataaatttcaacagcatgaagaaaatggaaatgaaaatcaacagcaacaacatcaacaacaagaaTTTGAGATTGAGGAAAGtgaattgatgatgatgaatcatgaagaaaaagatgaaagtcGAAATGATATTGGTGATGAAAGTGAAAGGGAATTATCGTACGCCTCAACATCGTTGACGTTGACCAAGGATACTGGCGTTAAGGTTTTAAGCGACGTTAAATTGACGTCATCCGAAATGTTATCGCCCACTATTAAGGATATTATTCAGCAGTATAACAACCACAacgaaagcataaaaaaagagGAAGAAGTTTCATATGAGAACGAAAACGTGACAAGAGAAGATGATAACGACGATATATGCCCAGCAGTTGTTGATgatcattttcaattgattaaagGCACTGAGAATATGAGTGtaaataagagagaaaaagatgaagaagcttcatcgtcatcatcaactTCTAAAATTGCCAATACTACTGCTGCCGCTTGTACAAGTGTCATTCGAAAAACAATATCAGAAAGTGAAACCTCTTCGTCGGAGAAAGGAGAACCGCAGCCAAGTACATCGGGATGTGTTGTAAGCAAACCTAATGTTGTGTTCAATGTGAATTCTATAAATTCTAGactgaaaattaataataataaacaaccAAAAAAACTTATCGTGAAGCTTAAAAAGCCTTTGATACCAGCAGATGAAGCTTCAAAGGCAGTTTCAGTAGTGCATGATGTTgcaataaaagatgaaatgaattgtCAAGATGCAGTGATTGTggcaaaagaaattaaaacaaaagaagaaaatgaaaaggaaaagaaaccaACAGTTTCGTGCAAAATGGAAGTTGAAGAACAttatgatattttctttcttgatcaGCATGATTATGGACAtaatagtaataataataacaacccaacaacatcaacatctgCATCAACGCCAGCAACAATCACAACATCAGAAATTCCAGCCGAAATTCAGAATCACGATTCAGAGACAAATCAGTCATTAATGAGTATGGATTTGGAAACTGAAAATATAAACAGTAATAATATGAAGCAAGAACAAAATAAAGACGATTACCCAATCATTATTAAAACAGAGCATaatgcatcatcatcatcatcgtcttcgtcgtcgtcatcatcatcattagtGACTTCAACATTGAGTAATCAAAGTTCATGTTCAAACTCAATTCCTGGACCATCACGATTAACAATTGAAAGTGTTTCATCAGTAAATGATAACAACACTTCAccattaaatttcctttatcAAAATGATCGTGTTCGCTTCTCCCCACCACTTTCACCGTATGTTTATCTGAAGACCTTTTCATCAACCCAACAGAACTGTGAAGAAATTCCAAAGCAAGAAGGAGAAATAATGTCATGGAATGGAAGTAGCAGTAACAATGTTGTGTCATCAATTCAAAATTCTGATCACAATAACTCATCATTATGTTCGCGATATACGCCTTCATTTGATGATAATCGAAGTAATTATACTGATCTGGACGgtggaaataataaaacaaattcaagtGTTGGTGATATTCATCATATTCGTGCTCCATCAACTGATAGTCTTAATATAAGAACAGACGAAAAAATGCCAGCACGTGGCGAGATAAGTGAACAAGAAAGTAATGGCGAGATTGAGCAGCCGTGGCATCATCCGtACTTTCAACTACAAGCTTATCCAAGCTCTTATGATATAAGCACAGCACAAGAGTGCTGGAATCTCTCAAAAGCTGATAGTCAAAATGCATGCGATTCTAATAACATTCAGAATGTGATAATCAATTTTCCTCCATTGAATGCACAAAGTGATGACGTTAAAACTCctgatttattgaaaacaatcATGCAAACAGTAACGAAACAAGAACCGACAGGAATTGATGATGAAGCAAGTGGAAGTAACAGTAATTTAATTGTGAAACGTAATCGCACATTTCGATGTCCCGAATGTTCGaaatctttcataaaattacGTGCAAGAAATCGTCACATTGAACAAGTCCATCCGCATttgaagagaacaaaaaagaagaagactgCACCAACATCAACACAGACGAGTAAGTCGGAAGTGACGTCAGTGTTtgcatcgtcatcatcagcaCTTGTGAATTGGGCAGCAGCTTCATCAACAATCACGACAACAACACAAGAAGAGAAAGACATTAAAGTTCTCAGCATCATTAAGAATGAGCCGTCGACATCTGCTGCTGTTTtggttaaaaatgaaatgaatcgAATGTTGATAAGCACAACAGGttcaataaaattggaaaTGGATCGTTTACTTCTCGAACcgtcaacatcatcaacagcaaCCAAAGCACAATTGTCACAATTAGGATTGAAAATTAAGAGAACTTATATGTGTGCGAAATGTTGTGAACAGTTTAGAACATTGAAGCTTCTTGATAAgcattttcaaattcatccAGCTGAATGTACATTATGTCAAAAGACTTTCAATAGTTGGAACACATTCTCACTTCATCTCAAGCATCATCTCAACATTCGTGCTCATGCTTGTCGCTTTTGTCCAAAGCGCTTTGTACAACGTCAACGTTTGGTTGAACATGAACGTGTTCATACCGGTTCGATGCCAATAAAATGTCCATTATGTGATGAAAGATTTCGACGATATTCCAACATGCTTCATCATCGTTCTcgaattcatttgaataagaaaatgaaacaagaagaTTTTGTTTGTGATTGTGGTGAGATTTTCCAAACAAAAGCCAAACTTCGATGGCATCAAGAGACTCATGAGAATAAACCAAAACCATGTCCTTATTGTCGTGAACGTTTTACACATCGAAATTCACTAACAAGACATATTCGTTTGTCACATTCAGAGAAATATGTTTTTTCGAAGAGTAAAGCTGTAAAATGTCCGATTTGTAACTCAACTTACTTGCCGTCAAGTATTAAAGCTCATATGGCAACGCATCAGATTTCCAACAAAGAATATTCATGTTCCATCTGCAGCAAACAATTTAGCACGAAATGGAATCTGAAGCAACATTATTGGACACATGCCAATCGAAGCACGAAACCTTTTCAATGTAACGTATGTCCGAGTGCTTTTGTACGTGAAACTGACTACACAACACATATGAATGCCCATCGTTCAATTAAACCATTTACGTGCAACACGTGTGGAAAGCGATTTGTAAGAAAATACAACTGGTTGCGTCATTCACGGGAGCATGAACGTGAGAAGAAGTTTGTTTGTGAAATATGCAATAAGAAATTCCATCGAGCTTACTATTTGACCGAGCATAAGAGAGTTCATACAGgtGAGCGCCCATTCTCATGTACAATATGTGAAGTGATAATGGCAAACAGTGACGGAAGCAGTGATGAGTTTTTTGAATGCGAGAGTCCATCGAAGTTGTCAATTcaACGAAGTAAAGAAAATCCTTTCGATTGGAATAATTCAACTTCGCCCAACATCAGTAATTCAGCAAAAGCAGAGATCCTGGAAATTCAAAGACAACATGAAATACAGGAACCAACTAAAGGCGATTTTAAGTTCGCCGAGCCAAGGACGCATAGACAGCGctttaaagaattaaagtCGTGCATgaatgatgacgatgacgcTACAATTAATGATTCGCAGGATCCATCAAACAGTTCATCAAAAAGCGTCGATGCTGCATCACGAAACACTGTTCAATCCTCTCATCCGTTCCGTGTGATTGACAATGACGGATTGTCGATTCATTCAATGCAATCGTTAGGACGTGTTGGACGAATATTGTCTGGAAGTCTCGATCCAGCAGCTATGAATGTCACTAAAGAAACGCAACAAGCACAAAAAGATTCACCAAATCAATTGTCGAGTGGACAAAAGTCAGATTCAAATCAAACATTGGAAGCTTCTATCTCACAAAAGCCTGAAGACACTCAATCACAAAACAGCAATTATTCATTAACAATTCATCCACATACAATCTTACAAGAACCTGATGTGATTGCAAGCACAAAATTAGCACACTCAATGACAACTGACAGTATAACATCAGCTGGTTCTGGTATTCCAATAGCACCACCACGTCGTAAGCGTCGTGACAAAAGTCGAAAAgcatcttcatcatcagagCATCAAACAATAATTTCTGCTGCAATTCCAAAACTTATTTCCATGGATAAAATAAACGATGAACTTCATAAATCATCGACGACGACAACAACAAACAGTCACACTTCATCAATGACTACAAGCACAATCGTTGTCAGTAATGCTTCTTCGGAATTAAAGCCAGAAGAGACATTGAGTGATGAAATTCTTCCTAGTCCGGCGACTCTTTACGCCATaacgaaagaaattgaaaattcttttaaagaatCGTCTTCCATTGAGTCACCGACAAGTGCTGGTGCAACAACATTAGGATCGCCATCAATTGCATCAAGATTCACATTTAGTGGATCTCTTAATAAAATTCCATCAacacaacaacatcaacaacattctTATCAAACTCATAAAGGAAGTCCATCAAATAGTGTCAAGAGCAACTCAGCTCCGGGACGTGTCAGTTCAATGGATCCACACTTTACTATGAGTATTCATAAAGTGACACAAGGAAACTTCTGTGTTCGTCCCCAAGATGAATTAAACAATAAAGCGCCGACAGCTCAAGACGACACAAGAAAAcgatcaacaacaacaatggaAGATATTGAGCGACTTCATCAGATTCGTTCGGAAGTTGTTGAACATAAAACTGGCGAACGACTACTAAAATGTCTTGGAACGAATAGTTTAGGGAATGACACACGTTATCGTCCTGAATCTATTCAAGAATCATCAAAAGAACGACGAAGGTCAGCTGGTGATGAAGACATGTTTAAACAGACAAATGTTAGCGTTCGAATGCGAACAGATTCGGGAAAACATTTGAGTGATCGCGAGATTCTTGAGCAAGTGCCGGTAAAAAATCTTGACACTGGTGAGAACTTCCCTTTATCAGTTGCTGATGAGAAGGCTGAACAGTGCATAAATCCATTGTCACTTTACATCATGCAATATGCTTCACATATAAGAGAATCTGACGAGGAATCAATCGGTGGGATGACGATTGGCTCTGAAATACCACCCGGCGATGAAGAAGAGAAcgaagaagaggaagaaggAAGATTGAAGAGAAAGACGgcaagaataaagaaattctttaagacAACAGCACAGAAAGCAGCAAGTAAAGCAAAATCAATTGCTTCGGAAGTGTCACATGCAAGACATAAAGAAGACATCGCTGAGATCGTCGATGTCGCTAATCCTGATCAATGCATAAAGATTAAAGCAAGTAAAACAAATACGGGACCTTATGAGTTCTCGAAACTTCAACATGTTCAAGATTTGTCAGGTGAATTAACTGGCGCTGTTTGGTGCATGAAGTTTTCGCCATGTGGTCGTCTTCTAGCAACAGCTGGTCAAGATCGTTTGCTTCGTATTTGGGTGTTGAAGGATGCTTATCATTATTTcgaagaattaataaaaaaattcaatgctGATCAGAAATCATCGCCAACACCGTCACAAGAGTCGCTTGTATCGCATCAATCGTTCGAAGAATCAGCACAAATACTTCAAGCTGTTGCTAGCACTTCCGGTCCTTTTGTGCCATTACCTTATCGAACTTATTCGGGACATACATCAGACTTACTTGATGTTAGTTGGAGTAAATCTCATTTTGTGTTGTCAAGTTCAATGGATAAGACCGTGAGATTGTGGCATATATCGAGGAAGGaatgtttatgttgttttcaACATCTTGAATTTGTTACGGCAATTGCTTTTCATCCTCAAGACGATAGTTTCTTTCTTAGTGGATCACTTGACGGACGTTTACGTCTTTGGAATATTCcaaataagaaagttttcttatggAATGAAGTTGACGGTCGACGTCAGTTGATAACAGCTGTTAACTTTTGccaaaatggaaaatttgctGTTGTTGGAACATATGACGGTCGTTGTTTGTTTTACAATACAGAACAACTGAAATATCATACACAAATTCATGTGAGATCGACACGTGGCAAGAATGCAACAGGAAGGAAGATTACTGGAATTGAACCGATGCCTAATGAAGACAAAATTCTTGTGACATCAAACGATAGTCGAATTCGTTTGTATGACTTAAGAGACTTGAATTTAAGCTGCAAATACAAAGGATACGTCAATGATTCGCAACAGATTAAAGCGTCGTTTAGTCATGATGGAAAGTACATCGTAAGTGGATCAGAGAATCAAAGTATTTATATTTGGAAGACACATCATGATTATGCAAAGCTTAGCTCCGTTCGTCGTGATCGAAGCGACTTCTGGGAAGGAATTAAAGCCCACAATGCCACTGTTACATGTGCAATATTTTCACCACATCCAGAGACGATAATCAAACCAGAAATTGATAACGAGATTGGTGAGAAAGAGAAAGTTGATCCATTAGTGGAACAGCGAACGAAAGGGTGTGGTGGCTATGTGCTTGTCAGTGTTGACTTTACTGGTTgcattaaagtttttattaacaaaactAAGCCAAAGCACTCGAGTTTGCCGTACACAGCACTTGATTGA
- Protein Sequence
- QQQQQQQPLQNNFTLAKRNSLNNSNNNSNHYNNNNNNNINNTVLLNNRPYRLTLDPPQTVTASPQPSTSTFLNSNGNYGTRPSTNNNSNGEIFDNKGQAFRCIQNTEQKNIMIVNTSSTQFIQQTLPVKKQQSTAIELHPVFIDSNGMPINSNSVPNAISIIPRYTSEKYSGPPPSYSTAISSVTNTINDKPRVIDLTQTPTTSTMKMMEKANSCNNNKNSRMTTTTLSGNGAEENRHLMIATPQKILQYTQTENGDFMITEKIMSPQQQQRSSSLHKKDSNGKSNNNDYTIKFLDVDNQITFDITGDEEDENKFQQHEENGNENQQQQHQQQEFEIEESELMMMNHEEKDESRNDIGDESERELSYASTSLTLTKDTGVKVLSDVKLTSSEMLSPTIKDIIQQYNNHNESIKKEEEVSYENENVTREDDNDDICPAVVDDHFQLIKGTENMSVNKREKDEEASSSSSTSKIANTTAAACTSVIRKTISESETSSSEKGEPQPSTSGCVVSKPNVVFNVNSINSRLKINNNKQPKKLIVKLKKPLIPADEASKAVSVVHDVAIKDEMNCQDAVIVAKEIKTKEENEKEKKPTVSCKMEVEEHYDIFFLDQHDYGHNSNNNNNPTTSTSASTPATITTSEIPAEIQNHDSETNQSLMSMDLETENINSNNMKQEQNKDDYPIIIKTEHNASSSSSSSSSSSSSLVTSTLSNQSSCSNSIPGPSRLTIESVSSVNDNNTSPLNFLYQNDRVRFSPPLSPYVYLKTFSSTQQNCEEIPKQEGEIMSWNGSSSNNVVSSIQNSDHNNSSLCSRYTPSFDDNRSNYTDLDGGNNKTNSSVGDIHHIRAPSTDSLNIRTDEKMPARGEISEQESNGEIEQPWHHPYFQLQAYPSSYDISTAQECWNLSKADSQNACDSNNIQNVIINFPPLNAQSDDVKTPDLLKTIMQTVTKQEPTGIDDEASGSNSNLIVKRNRTFRCPECSKSFIKLRARNRHIEQVHPHLKRTKKKKTAPTSTQTSKSEVTSVFASSSSALVNWAAASSTITTTTQEEKDIKVLSIIKNEPSTSAAVLVKNEMNRMLISTTGSIKLEMDRLLLEPSTSSTATKAQLSQLGLKIKRTYMCAKCCEQFRTLKLLDKHFQIHPAECTLCQKTFNSWNTFSLHLKHHLNIRAHACRFCPKRFVQRQRLVEHERVHTGSMPIKCPLCDERFRRYSNMLHHRSRIHLNKKMKQEDFVCDCGEIFQTKAKLRWHQETHENKPKPCPYCRERFTHRNSLTRHIRLSHSEKYVFSKSKAVKCPICNSTYLPSSIKAHMATHQISNKEYSCSICSKQFSTKWNLKQHYWTHANRSTKPFQCNVCPSAFVRETDYTTHMNAHRSIKPFTCNTCGKRFVRKYNWLRHSREHEREKKFVCEICNKKFHRAYYLTEHKRVHTGERPFSCTICEVIMANSDGSSDEFFECESPSKLSIQRSKENPFDWNNSTSPNISNSAKAEILEIQRQHEIQEPTKGDFKFAEPRTHRQRFKELKSCMNDDDDATINDSQDPSNSSSKSVDAASRNTVQSSHPFRVIDNDGLSIHSMQSLGRVGRILSGSLDPAAMNVTKETQQAQKDSPNQLSSGQKSDSNQTLEASISQKPEDTQSQNSNYSLTIHPHTILQEPDVIASTKLAHSMTTDSITSAGSGIPIAPPRRKRRDKSRKASSSSEHQTIISAAIPKLISMDKINDELHKSSTTTTTNSHTSSMTTSTIVVSNASSELKPEETLSDEILPSPATLYAITKEIENSFKESSSIESPTSAGATTLGSPSIASRFTFSGSLNKIPSTQQHQQHSYQTHKGSPSNSVKSNSAPGRVSSMDPHFTMSIHKVTQGNFCVRPQDELNNKAPTAQDDTRKRSTTTMEDIERLHQIRSEVVEHKTGERLLKCLGTNSLGNDTRYRPESIQESSKERRRSAGDEDMFKQTNVSVRMRTDSGKHLSDREILEQVPVKNLDTGENFPLSVADEKAEQCINPLSLYIMQYASHIRESDEESIGGMTIGSEIPPGDEEENEEEEEGRLKRKTARIKKFFKTTAQKAASKAKSIASEVSHARHKEDIAEIVDVANPDQCIKIKASKTNTGPYEFSKLQHVQDLSGELTGAVWCMKFSPCGRLLATAGQDRLLRIWVLKDAYHYFEELIKKFNADQKSSPTPSQESLVSHQSFEESAQILQAVASTSGPFVPLPYRTYSGHTSDLLDVSWSKSHFVLSSSMDKTVRLWHISRKECLCCFQHLEFVTAIAFHPQDDSFFLSGSLDGRLRLWNIPNKKVFLWNEVDGRRQLITAVNFCQNGKFAVVGTYDGRCLFYNTEQLKYHTQIHVRSTRGKNATGRKITGIEPMPNEDKILVTSNDSRIRLYDLRDLNLSCKYKGYVNDSQQIKASFSHDGKYIVSGSENQSIYIWKTHHDYAKLSSVRRDRSDFWEGIKAHNATVTCAIFSPHPETIIKPEIDNEIGEKEKVDPLVEQRTKGCGGYVLVSVDFTGCIKVFINKTKPKHSSLPYTALD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -