Cmar007396.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000010.1:1389645-1392339[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.4 1.8e+02 3.1 0.5 1 23 195 218 195 218 0.90 2 16 3.5 2.6e+02 2.6 4.4 2 23 222 244 221 244 0.93 3 16 0.00072 0.053 14.2 1.6 2 21 251 270 250 272 0.92 4 16 0.071 5.2 8.0 0.4 2 23 397 419 396 419 0.90 5 16 1.2e-06 9.2e-05 22.9 0.6 2 23 424 445 423 445 0.97 6 16 4.1e-05 0.003 18.1 0.8 1 23 484 507 484 507 0.96 7 16 0.00036 0.027 15.2 0.5 1 21 513 533 513 534 0.94 8 16 0.0015 0.11 13.2 2.3 1 23 566 589 566 589 0.98 9 16 0.0001 0.0078 16.9 4.8 1 23 594 617 594 617 0.96 10 16 0.00028 0.021 15.5 2.1 1 23 623 646 623 646 0.96 11 16 0.5 37 5.3 4.0 2 23 661 683 660 683 0.94 12 16 0.0011 0.082 13.6 1.4 2 23 719 741 718 741 0.97 13 16 5e-05 0.0037 17.9 0.8 3 23 749 770 748 770 0.96 14 16 0.36 27 5.7 0.1 1 23 776 797 776 797 0.92 15 16 0.011 0.85 10.4 2.1 1 23 804 827 804 827 0.95 16 16 0.0078 0.58 11.0 2.7 2 23 834 856 833 856 0.94
Sequence Information
- Coding Sequence
- atgaaagtttcaaaGCTGTGTCgagtttgttttaaaaaaagtgaTGGAAGTGTCaatatatttgaaaaagaGCCACACAAATTATCTGCTGCTAAGATGCTTGAAGAAATATGTGGAGTAAAGATATCAAAGAAAGATTTGCTTTCACAAATAATATGCAACCAATGTTTGATCGAGACAAAAATAACTTATTGTGTACGACAACGATGCATTGAATCAGATAAACGTCAGCGATCGTCTAACACAATGGTCAGAAATAAACATATCGTTAAGGAACAAATTAGTGAAAAATCAACCCgtaaaatcaaattatcaGATAACGATGATGAGAACAGCTCCTCTCTTGATGATCACAATGACTACTCGTCAGAACTTACAGATCCAAGCGAGGAGAAGGAAGCTTTTCCAGTAAGAGACAAATGTCAAAATccagcaaaagaaaaatttccattaagcAGCGAGACtgaatttgaaaatcaatctGAACTTACTTACGCTAATGAAAAAGATATACCAGAAGAAGTCAAAATtagtaaaaagaaattacgTTATCCTGATCCTTTTATaaacgaaagaaatgaatttatttgcGTTATTTGTTATGCCATATTAAAATCTTGGCAGTCATGGAACGCTCATCATTATCAAAAGCATTCTAAGAAAACTTGTGGTGTGTGCACTTTCGAATGTGTGacctttcaaaatttaaaagaacatTACGAAAATTGCcacatgaaaggaaaatttttaagttgtCCAATATGCGGTAAAGGATTTCGTTCAAGACATGGATTAATCGGGCATTATAATTGTCATAAAAGTACTTCGTGTAATATCAAGGAGGAAACAATTTCAAGTGAAACAAATGCTGAAGTTGCTTCCAAACAAAACTGTCATGATGAAACCATCAAATCCGTTAATTATGCAGATCAGTTAGTTGAAAAAGTTGATATTAAGGAAAATAGTGACGATGATTGGGATCAAAATATTCCGAATTATGAAAGTGACAGCAGCAGTGATCATAAAATTGTGGAAACAATAACAAAACCATCAAATGATTCTCAAAATGTCGTTAAGAAAGAAGATGATTTTGAATGGGATGATTTGACCGTCACTGAGGAAGTTaatgacaaatttattaaagatttcattCCTGTGAAAAGAACTGGAACAAGAACTATCTCAATAATGTGTTTCATTTGTCAGGAAAGTTTTCCATCGAAGTTAGATAAACAAAGACACGTCACGCTCAATCATCCACCGAATATTCAATGTTCTGTTTGTGGAAAGACATTCAAACAAGCACGTAAATATGAAAGACATATGGAAATTCATATCTGTGGTGATTACAATTGGACAATGAAACATTCATGTgatatttgtaatttttcgTCCTCCAAAACTGACATAGAATGTCACATGTTCAATCGACATCTTCGAATTAAATTCCATCCTTGTGATATATGCGGCAACAGTTTTCAGAATTCAACATTATTGAGACAACACATGTTTACAAATCATGATACACAACCGACATACATTTGCAGTAAATGTGGACAAGGATTTGCAATGCAAGCAAGTCTTAAACatcatagaaataaaaattgtttaaagaCATCAAAGAGAGGTGGTCGACTCAATGCATTAGGCTCTAGCAATAACTTTCCACAGCCAGAGATAAACTCAAATGGTGCGTTCCAATGTCCTGATTGtccaaaagaatatttcattaaaagtagCTGGTATCATCATTATCGATCAAATCATCGAATGATGGGCTATAAATGTCGATTTTGTGAACAAGAATTTACTCATCGTTATAATCtcaagaaacatttaaaagaaattcatggACAACAAGAAGATCACGTTTGTCATATTTGtgggaagaaatatttgacgGCTGATGGATTGAATCTTCACATGAGATATACTCATGAGCCGCATATGAACGATTCAAAAAACTCGCTTAAAGTTAATAAATGTCGGAAATgttgtaaaagttttccatcagTTGAAAGTcttcaacaacataaaaatgaatttcatccTAAAGTATTAAAAGAGAAATGCTACATTTGTTTACTTGCTCTACCATCGGTTTTTGCAAAAGTAAAGCATATAAATCGAGAGCATAGTGATTGTGTTAACAAAGAATGTGCAAAGTGTGgtcaaaagaagttttcaacaGCTTCAAGATTTGAGATTCATATGAGAAAGCATGAAGTTGGCAAGACTGAAATTTGCAAGTATTgcaacaagaaattttcagtTCCAAGAACTCTTGCAAGTCATATTAATTCAAAAcataaaggaaagaaactaTTTAAATGTGAGATTTGTGGAGATTCTATCAGCTCAACTGATATGGCTCGTCATTTAGcgaaacataaatattcgaatgaaaattttaattgcagtaaatgtaaaaattctttttatagtaaaatactttttgatAGGCATATGGTTAGAGTGCATGGATCTCATCCAGGTGTAGAGTGTTTTCATTGCGGAACATTCTTCAAAACGAAACCTAACATCGTAACGCATTTCAGGCAAAAacattgtaaaatatttaaagataaagaataa
- Protein Sequence
- MKVSKLCRVCFKKSDGSVNIFEKEPHKLSAAKMLEEICGVKISKKDLLSQIICNQCLIETKITYCVRQRCIESDKRQRSSNTMVRNKHIVKEQISEKSTRKIKLSDNDDENSSSLDDHNDYSSELTDPSEEKEAFPVRDKCQNPAKEKFPLSSETEFENQSELTYANEKDIPEEVKISKKKLRYPDPFINERNEFICVICYAILKSWQSWNAHHYQKHSKKTCGVCTFECVTFQNLKEHYENCHMKGKFLSCPICGKGFRSRHGLIGHYNCHKSTSCNIKEETISSETNAEVASKQNCHDETIKSVNYADQLVEKVDIKENSDDDWDQNIPNYESDSSSDHKIVETITKPSNDSQNVVKKEDDFEWDDLTVTEEVNDKFIKDFIPVKRTGTRTISIMCFICQESFPSKLDKQRHVTLNHPPNIQCSVCGKTFKQARKYERHMEIHICGDYNWTMKHSCDICNFSSSKTDIECHMFNRHLRIKFHPCDICGNSFQNSTLLRQHMFTNHDTQPTYICSKCGQGFAMQASLKHHRNKNCLKTSKRGGRLNALGSSNNFPQPEINSNGAFQCPDCPKEYFIKSSWYHHYRSNHRMMGYKCRFCEQEFTHRYNLKKHLKEIHGQQEDHVCHICGKKYLTADGLNLHMRYTHEPHMNDSKNSLKVNKCRKCCKSFPSVESLQQHKNEFHPKVLKEKCYICLLALPSVFAKVKHINREHSDCVNKECAKCGQKKFSTASRFEIHMRKHEVGKTEICKYCNKKFSVPRTLASHINSKHKGKKLFKCEICGDSISSTDMARHLAKHKYSNENFNCSKCKNSFYSKILFDRHMVRVHGSHPGVECFHCGTFFKTKPNIVTHFRQKHCKIFKDKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -