Cmar015955.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000063.1:1972148-1973982[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.009 0.67 10.8 4.0 2 23 206 228 205 228 0.96 2 10 0.013 0.98 10.3 1.7 1 23 233 255 233 255 0.97 3 10 3.1e-05 0.0023 18.5 3.2 1 23 261 285 261 285 0.97 4 10 0.00012 0.009 16.7 1.2 1 23 291 315 291 315 0.98 5 10 0.018 1.3 9.9 0.4 2 20 321 339 320 341 0.93 6 10 0.00031 0.023 15.4 0.7 1 23 367 392 367 392 0.96 7 10 0.0017 0.13 13.0 0.6 3 23 401 421 400 421 0.97 8 10 5.8e-06 0.00043 20.8 1.2 1 23 424 447 424 447 0.96 9 10 0.00027 0.02 15.6 1.1 3 23 457 478 456 478 0.95 10 10 1.6e-06 0.00012 22.6 0.4 1 23 484 506 484 506 0.98
Sequence Information
- Coding Sequence
- ATGGTTGAAAATATCTCTTACCTTGATGATATTTGTCGACTGTGTTTGGCAACACGAAGCAAAGAGaacttacaaatattttctaagaTAGAAAGTacgacaaaaacaaaatttgaagaTTTGACGCAAATAGAGTTATCCTTAAATGACGATTATCCTAACAACATGTGTTCAGAATGTAGTGATCGTCTTGACAGTTTTTACTTTTACAAGAACCAACTTgttagaaaacaaaatgagCTCGTGCAGTTTCTCGGTATCGATAATAAAATTGCAGTTTGTAATACCAAAAAGCAATTGTACGAAACGACGGAAGATTTCATTActgaagaaatttgtttagaagaagatttaattgaggaagatgaatttgatgtgatttatgaaaatgaagaagttttagATATGACAGATGAAGAAATCGAAGTGTACGACAGTCATGATGAGATAATTGTCGAATCTATGGAAGAAGGAGAGAAATCTAGTTTAACAGAATTTACTGaagattttcatgataatCAAAACCAGAAAGTTCTCAGATCAGAAGAAATAAAGTATGAAATAATCGAGCCAAAGTTGATATTGACACCTTCTCAAATCGCTACTGGAATGATTAAATGTGAACAATGCAAAATgatctttaaaaagaaacatttttataataaacATCTTGAAAAAGTTCACAACAATCCAAGTTTCATTTGTGAAACATGTGGGAAAATTTCACATTCGAGACTTCAGTGGCGGAGTCATTTAAGGAATCATGATCAGACACTTAAATATGCTTGTAATTATGAAGGCTGCGAGAAAGCTTTTAGAGTGAAACATCACTTGACCAATCATCTCCGTTCACATACAAAGGAATCGCCATTTCAATGTCCCTTTGAAGGATGTTCGTCGAAATTCCGACAAAAATTTGCACTAACAGTTCATTTGAGAAAGCATACTGGAGAGTTCATTACATGTGACCAATGCAAATCTCCATTTGTTACTCAATTTATGTTAAACAAACACAAAGATAAATGTAATGGAACATTCAAACCCTTGACTTTAAGAAACTCGTCAAAATTTAAGAAATCTCAGAATTATTCAGATGCTTACAAATGTTTGTTCGAAGAATGCGACGAAACATTCAAAGCTAAAGTAACTCTACAAAAACATCTTTCAAAGGTTCACAAGATGAATGTTACACCAACTTTATGTGTGATTTGTTTCCAAAATTTTGACAGTCAGCAAAGCTTGAAAATTCACCAACGTGATCATCTTCCATTCACATGTTCACTTTGCAGTACAAGTTTCAAGTCTCGAGACAATCTGGAGAATCATCTAGCGAAAAGTCacgagagaaatgaaaatagacCTCATGGGTGTGATCAATGTTCTGCATCATTTAAACGAGCTGAACATTTGAAAACTCATATAGCTTATAAACACAGCAACAATCGTCCTTTTACATGCGATGTCTGCTCGTTCATCTTTGCTTCGAAGAGTGATCTGAAAGTTCATATGAAAATTCAtctaaaaacaaaatcaaattttttataa
- Protein Sequence
- MVENISYLDDICRLCLATRSKENLQIFSKIESTTKTKFEDLTQIELSLNDDYPNNMCSECSDRLDSFYFYKNQLVRKQNELVQFLGIDNKIAVCNTKKQLYETTEDFITEEICLEEDLIEEDEFDVIYENEEVLDMTDEEIEVYDSHDEIIVESMEEGEKSSLTEFTEDFHDNQNQKVLRSEEIKYEIIEPKLILTPSQIATGMIKCEQCKMIFKKKHFYNKHLEKVHNNPSFICETCGKISHSRLQWRSHLRNHDQTLKYACNYEGCEKAFRVKHHLTNHLRSHTKESPFQCPFEGCSSKFRQKFALTVHLRKHTGEFITCDQCKSPFVTQFMLNKHKDKCNGTFKPLTLRNSSKFKKSQNYSDAYKCLFEECDETFKAKVTLQKHLSKVHKMNVTPTLCVICFQNFDSQQSLKIHQRDHLPFTCSLCSTSFKSRDNLENHLAKSHERNENRPHGCDQCSASFKRAEHLKTHIAYKHSNNRPFTCDVCSFIFASKSDLKVHMKIHLKTKSNFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -