Cmar004018.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_900005825.1
- Location
- CVRI01000041.1:813617-816517[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0027 0.2 12.4 0.8 1 23 148 171 148 171 0.93 2 22 7.9 5.9e+02 1.5 1.0 1 8 193 200 193 202 0.82 3 22 0.039 2.9 8.8 2.0 1 19 219 237 219 240 0.94 4 22 0.046 3.4 8.5 1.7 1 23 244 266 244 266 0.97 5 22 0.0061 0.45 11.3 4.6 1 23 274 297 274 297 0.93 6 22 0.026 1.9 9.3 4.0 3 19 304 320 303 322 0.95 7 22 0.0011 0.084 13.6 1.4 1 23 327 349 327 349 0.98 8 22 0.0015 0.11 13.3 1.1 1 23 357 380 357 380 0.96 9 22 3.2 2.4e+02 2.8 0.3 1 19 385 403 385 403 0.83 10 22 0.0023 0.17 12.7 1.0 2 23 411 432 410 432 0.95 11 22 0.0052 0.39 11.5 3.7 1 23 440 463 440 463 0.96 12 22 0.6 45 5.0 2.2 1 21 468 488 468 489 0.94 13 22 0.00011 0.0078 16.8 0.6 1 23 493 515 493 515 0.98 14 22 3.9e-05 0.0029 18.2 2.1 1 23 523 546 523 546 0.97 15 22 0.31 23 6.0 2.4 2 19 552 569 551 571 0.95 16 22 0.00053 0.039 14.6 0.0 1 23 576 598 576 598 0.95 17 22 0.001 0.076 13.8 2.3 1 23 606 629 606 629 0.97 18 22 0.6 45 5.0 2.2 1 21 634 654 634 655 0.94 19 22 0.00015 0.012 16.3 0.6 1 23 659 681 659 681 0.98 20 22 3.9e-05 0.0029 18.2 2.1 1 23 689 712 689 712 0.97 21 22 0.31 23 6.0 2.4 2 19 718 735 717 737 0.95 22 22 7.8e-05 0.0058 17.3 3.8 1 23 747 770 747 770 0.97
Sequence Information
- Coding Sequence
- ATGAAAAACTTGAGAAAACATGATTTGAATGTCAAAATCGTccttgaagatattttctctGACTTCAAAAACATTCATCAGAAATGCCGTTTGTGTTTCAAGGAAGTATACAATCAAGAGCCAAAAGTATATCTTACAAATGATATGATAAACAAGATTCATGTTGCCTTGCAAGCTAACATGTCATCAGATGGAACAGGATCAGAATTTGTGTGCTCAAAATGTGAAAGCAACTTAAATAATCTTTATCAGTTTAGGGTACAAATAAAGGGAAAACAAAAgtgttttgaaaagtttagaaatttgaaaattgacAACACTGATGAGAGACTTGCGAGCATTCACGAAAATTCGatcaaagttgaagttgaagaagcaacttgtgaagatgaaaatcaaattcttaAGTCCCGAGATATTAATCAGAAAGATCAACAGCTTTTTCCTTGCGATGTTTGTGGAAAGGATTTTAAGAATGTTGTTGGAGTCCAGCGACATTGCAGGAGAGAACATTCAAACAGTCGATATGGAGTTGCTAAGCATTTAAACTCGCGTAAAGAACATAAAGCAAAGGATTTTCAATGTCACATTTGTAAATCTTCTTACCTACTTAGGTTACGATTTCATTCATGGAGatttcatgaagaaagaaagttttcatgtgCATTATGTCGAAGAACATTCAAATTAGAAAGAAACCTTAAATCTCATAATTGTATTAAAACCTCATTTGTCTGCGATATTTGTGGTAAAAGATTGTACTGTCGAGCGCATGTCATTGAACACATGATCAAGCATAGGAAATATAAGACAAAAGACTATCAGTGtttcatttgtgaaaattctttttgtcgTAAGCAAACATTAAATGAACATCTATTTCAATatcacgaaaataaaaaagtcttttgcaatttatgcaaaaaagGTTTCAAGTCAGAACGAAATTTGAAATCTCATAATTGTGGTGAATACAAATTCGTTTGTGACTTTTGCggtaaaagatttcaaataagATTTTTCCTTGCTTTGCATATGAATAAGCATAGAAAACACagatcaaaagattttcaatgtcaCATTTGTTCAATATCTTATCTCAATAAGATTTCACTACAACGTCACATTTTGAACAttcatgaagataaaaattattcctgTACAACATGTAAACAAGTTTACTTGTCAGAAGAAAGTCTAAAAGGTCATTGTTGTCgatataataaattaatttgcgATATTTGTGGTAAAAGATGCCAAGACCGATATCGTCTTTCTAATCACATAGAATTGCACAGAAAATATAGAACAAAAGACTATCATTGCGATATTTGTAAAACTTCATACTATAATAAAGTTGGGTTACGAATGCATAgatcaaaatttcatgaagaaagaaagttttcatgtgTATCATGtagaaaaacattcttaacggaacaaacattgaaatctCATATTTGTAGTAATTCCACATTTGTTTGTGATATTTGTGGTATAAGATTTCATAGTCGAAGCAGTATTTTAGTTCACATGATCAAGCATAGAAAACAAATGACAACAGCTTATCAATGTCACATTTGTACAAAATCTTACCTCCGTAAGGCCTCATTGCAACGCCATATAATGCAAAttcatgaagataaaaaaatttactgtGCATCATGTAAACAAGTTTACAAATCAGAGGAAAATCTAAAAGCTCATTGCTGTCGGTATTACAAATTTATATGCGATATTTGTGGTAAAAGATACCAAAACCGAATCGGTCTTGCTGCTCACTTAGAAGCGCACAGAAAATATCGAACGAGAGACTATCATTGCGATATTTGTAAAACTTCTTACTATAATCAAGTTGGGTTACGACTACATAtatcaaaatttcatgaagaaagaaagttttcatgtgTATCATGtagaaaaacattcttaacggaacaaacattgaaatctCATATTTGTAGTAATTCCACATTTGTTTGTGATATTTGTGGTATAAGATTTCATAGTCGAAGCAGTATTTTAGATCACATGATCAAGCATAGAAAACAAATGACAACAGCTTATCAATGTCACATTTGTACAAAATCTTACCTCCGTAAGGCCTCATTGCAACGCCATATAATGCAAAttcatgaagataaaaaaatttactgtGCATCATGTAAACAAGTTTACAAATCAGAGGAAAATCTAAAAGCTCATTGCTGTCgGTGTATGAAAtctaaaacaaaagaatttaaatgcaaCATGTGTGAGAAAAGCTACTTCCATAGGGCAGGATTAAAAAGGCATATAAAACAAAGTCATGGAGAAAACTAA
- Protein Sequence
- MKNLRKHDLNVKIVLEDIFSDFKNIHQKCRLCFKEVYNQEPKVYLTNDMINKIHVALQANMSSDGTGSEFVCSKCESNLNNLYQFRVQIKGKQKCFEKFRNLKIDNTDERLASIHENSIKVEVEEATCEDENQILKSRDINQKDQQLFPCDVCGKDFKNVVGVQRHCRREHSNSRYGVAKHLNSRKEHKAKDFQCHICKSSYLLRLRFHSWRFHEERKFSCALCRRTFKLERNLKSHNCIKTSFVCDICGKRLYCRAHVIEHMIKHRKYKTKDYQCFICENSFCRKQTLNEHLFQYHENKKVFCNLCKKGFKSERNLKSHNCGEYKFVCDFCGKRFQIRFFLALHMNKHRKHRSKDFQCHICSISYLNKISLQRHILNIHEDKNYSCTTCKQVYLSEESLKGHCCRYNKLICDICGKRCQDRYRLSNHIELHRKYRTKDYHCDICKTSYYNKVGLRMHRSKFHEERKFSCVSCRKTFLTEQTLKSHICSNSTFVCDICGIRFHSRSSILVHMIKHRKQMTTAYQCHICTKSYLRKASLQRHIMQIHEDKKIYCASCKQVYKSEENLKAHCCRYYKFICDICGKRYQNRIGLAAHLEAHRKYRTRDYHCDICKTSYYNQVGLRLHISKFHEERKFSCVSCRKTFLTEQTLKSHICSNSTFVCDICGIRFHSRSSILDHMIKHRKQMTTAYQCHICTKSYLRKASLQRHIMQIHEDKKIYCASCKQVYKSEENLKAHCCRCMKSKTKEFKCNMCEKSYFHRAGLKRHIKQSHGEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -