Basic Information

Insect: Clunio marinus
Gene Symbol: -
Assembly: GCA_900005825.1
Location: CVRI01000047.1:975256-981902[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.92 68 4.5 2.6 1 23 164 191 164 191 0.88

2 22 1.5 1.1e+02 3.8 0.7 2 23 231 252 230 252 0.94

3 22 0.26 19 6.2 0.5 2 23 300 321 299 321 0.91

4 22 0.17 12 6.8 2.8 1 23 327 349 327 349 0.97

5 22 4.6 3.4e+02 2.2 0.2 1 23 353 376 353 376 0.88

6 22 2.2e-05 0.0017 19.0 0.1 3 23 383 403 382 403 0.99

7 22 0.0096 0.72 10.7 2.2 1 23 409 431 409 431 0.97

8 22 0.0016 0.12 13.1 3.2 1 23 437 459 437 459 0.98

9 22 0.00036 0.027 15.2 2.5 1 23 471 493 471 493 0.97

10 22 1.2e-05 0.0009 19.8 1.1 3 23 501 523 499 523 0.93

11 22 0.0021 0.15 12.8 1.2 1 23 529 553 529 553 0.97

12 22 0.039 2.9 8.8 0.7 3 23 693 716 689 716 0.91

13 22 0.001 0.077 13.7 2.4 2 23 752 773 751 773 0.96

14 22 0.11 8.4 7.3 2.6 2 21 780 799 779 801 0.90

15 22 0.0022 0.17 12.7 1.2 1 22 876 897 876 897 0.95

16 22 9.8 7.3e+02 1.2 1.2 1 23 902 925 902 925 0.86

17 22 4.3 3.2e+02 2.4 1.4 1 23 931 954 931 954 0.93

18 22 2.5e-05 0.0019 18.8 3.3 1 23 960 982 960 982 0.98

19 22 0.0031 0.23 12.2 6.7 1 23 988 1010 988 1010 0.98

20 22 3.6e-07 2.7e-05 24.6 0.3 1 23 1022 1044 1022 1044 0.98

21 22 1.3e-06 9.5e-05 22.9 0.3 2 23 1051 1074 1050 1074 0.95

22 22 0.19 14 6.6 0.2 1 20 1080 1101 1080 1103 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.92	68	4.5	2.6	1	23	164	191	164	191	0.88
2	22	1.5	1.1e+02	3.8	0.7	2	23	231	252	230	252	0.94
3	22	0.26	19	6.2	0.5	2	23	300	321	299	321	0.91
4	22	0.17	12	6.8	2.8	1	23	327	349	327	349	0.97
5	22	4.6	3.4e+02	2.2	0.2	1	23	353	376	353	376	0.88
6	22	2.2e-05	0.0017	19.0	0.1	3	23	383	403	382	403	0.99
7	22	0.0096	0.72	10.7	2.2	1	23	409	431	409	431	0.97
8	22	0.0016	0.12	13.1	3.2	1	23	437	459	437	459	0.98
9	22	0.00036	0.027	15.2	2.5	1	23	471	493	471	493	0.97
10	22	1.2e-05	0.0009	19.8	1.1	3	23	501	523	499	523	0.93
11	22	0.0021	0.15	12.8	1.2	1	23	529	553	529	553	0.97
12	22	0.039	2.9	8.8	0.7	3	23	693	716	689	716	0.91
13	22	0.001	0.077	13.7	2.4	2	23	752	773	751	773	0.96
14	22	0.11	8.4	7.3	2.6	2	21	780	799	779	801	0.90
15	22	0.0022	0.17	12.7	1.2	1	22	876	897	876	897	0.95
16	22	9.8	7.3e+02	1.2	1.2	1	23	902	925	902	925	0.86
17	22	4.3	3.2e+02	2.4	1.4	1	23	931	954	931	954	0.93
18	22	2.5e-05	0.0019	18.8	3.3	1	23	960	982	960	982	0.98
19	22	0.0031	0.23	12.2	6.7	1	23	988	1010	988	1010	0.98
20	22	3.6e-07	2.7e-05	24.6	0.3	1	23	1022	1044	1022	1044	0.98
21	22	1.3e-06	9.5e-05	22.9	0.3	2	23	1051	1074	1050	1074	0.95
22	22	0.19	14	6.6	0.2	1	20	1080	1101	1080	1103	0.94

Sequence Information

Coding Sequence: ATGTGTTTAGAAAGCTTATCCGAATTGATAGCTATTTCAGTTTTTGATAAGAGAAAAGGCAAATCCATTCATAGTTGGATCAATTTGCTAATACCAGAACTTTCAATAAGCATAAATGACGATTTGCCAAAAACAATTTGTTATATTTGTCTTCAAACTGTTTTAAATGCTTGTGAACTTCGATCAAGAAGtataaaaaacgaaaagctTCTACAAAGCCAATTACTTTCCAACGTACagattaaaagtgaaatttctgAGTATGTAAAATctgaaatttgcataaaaacaGAATCTGAAGAAAACTATTTTGAAAAGGATACAAATGATGATTCCAACATTTGGTTTGTTGAAGATCAGTTTAGGTCAGATAACAGTGAAACTaccaacataaataaaagcacCAAAACCAGAGTCAAGCTCAACAAAGCATCAACTAATGctttaagaaagtttaatttgaatcCAAATGTTTGGCCTAAAACAATCTTTCATTGTGATATTTGTGAAAATCATGGAGAATATAGAATCCTCGACAAAAAATCTAAATTGATAAGGCATATGAAATCGCATATCAGAGGAACTGTTCGATTTGGTTTAAACAACGcggaaatttatcaaaatcgGCAATtagcaaagcaaaaaattgCAAATGCATATTCTAATTTAGCGTATGACAAAAAGCTTAAACAATGTAAAGTATGTGGATTCAGGGAAAGTACTCTTCGGTTATTAAATCTCCACACTTACATCCATTGTGATTACGTTGAAGAACATCAGGAACCAGATCAAAGATTTACTTGCATTGCGTGCACTTTTGAAACTTTCGATGAAAATGACTTGAAACTTCATGTTTTATCGcatcaatttgattttgattcaaataCAAAACTTATTATGTGCACTAAATGTACTTACACCTTTGATAGTTACGCTGGCATTGAGAAACATTCGAGTCAACATAACGAGAGAATCACCCATCGATGTCTCAAATGTGGAAGCAAATTTGCGTATGGAATGAAACTTTTGCGTCACTTGAAAAATCACGAGACAACTTACTTTTGTGATTTGTGTGATTACACTGCAATAGCGAAAACTAAGATTACAAAGCATTTAGCAGCAACTCACATGAAACAATATTCTTTATGTCCAATATGTGGGAAAATCTTGAAGAACGCTGATGGTCTGCAATATCACATGAAAAcccatgaaattaaaaagaagtttaaatgtttgttttgtcCTAAGGAATTTAGATTAGCTCGGCATTACCGCGATCATCAAGGAGTTCACACAAAAGAAGCTactTATCAATGTTTATTATGCCcgaagaaatttaaaacatttgcgAGATTGACTTATCATCAACGTTTTCATGATCCTGAGAAAATCAGATTGCAAAGGGAAAAGCATCGCTGTGTTACTTGtgggaaaacatttttaacaagCAGCGCCTTGAAACGTCACACAGTCACTCATACTGGACTTcGACCTTGGATTTGCACCATTGAAGGATGCGATCGATCATTTACTCAAAGTTGTGACTTAAAAAAGCACATGAGAGGTCACGTTggagaaaatgtttataaatgcGAACATTTTGGTTGCAATCAAGCATTCAAATATCAAGCAGAACTTCGGTTGCATGAAAGTGTTCATTATGTAAATCAAAAAGGACGCTCAATTACTTATTTGATCAGAGTTATAATTCCAGAATTAAACATTAGTGAAAATGATTGTTTATCAAAAAAGATTTGTCATGTTTGTCTCAATACTATATTTAATGCATGTGAACTTCGTGACGAAAGTATCGAGAATGATGATCGAATGAGACGACAAATGACTGAAGATATTTTTGTCAAGGTTGAACCTGAAACTGAACCAtttgtaaaaattaaagagGAAGATGACAATGACGATGACATGGAATTGTCTTATGGAGAAGCTTTCCCATTAGAATTGAAAGCAGAAGAAATATCATcttcagatgatgatgaacaatcGAAGAAATCAGCCAAAACAAGAAATCCAAGATCAAAATGTAGGGAACGAAAATCTTTCTTATCTTGCGAAGCTTGTGAAGCAACTTGCGGaagaatcaaaatattcaaaagcagATCAGCTCTTGACCAACATATGAAGTATCACTTTGAAGGATCATTTACAAGTAAACCAAGGATCATTCCAGAGAGAGAAATTAACGATTTTTATGAGATGAGACAGAAAAAACCAGTGAAACCACTGCCATGGCTTAAATGCACAAAATGTCCTGCCAGATTCAAAAAGCACAGTTGGTTGGATCGACATATGGAGCAACACGgtgatgaagaagataaaaagtgCAAAAAATGTGACCTTCAATTCGCAAATTTCAAGGAATTGCGACTTCACAGCTATTTTCACTGCGATTATGTTGAAGAATATCATGAAATTGGACCACACTACTTTGAATGTTCACTTTGCGCTTTTCGATCGCttattgaagatgaattaaaGAATCATCTCTTCTCTCATGAATCTGAATTTAATAATACTAAAGTTATCGTTTGCATTAAGTGCAGTTATACGATTAACGATTTTAGAACTTTGGAACTTCATTCAAGCATTCATAATGAAATTCTAACTCATCGATGTGTCAAATGTGGAAAGAAATTTGCGTACGGAGACAAACTTCTTCGTCATCTTAAAAGATATAAATATTGCTACACATGTGATTTATGTGGACATTTAGAACGGTTAAAAGGAAGCATGGAAGATCATATGTGCGTTGTTCATAAGAAGGATTTAACATTCTTATGTCCATTCTGTGGCATCACTGAAAAAAGTAATGAGGGCTTAAAATGTCATATCAAACGAAATCATGAAGTCaacaagaaatttcaatgCTCGTTCTGTCCAAAGTCGTTTCGAACGCCGATTCACTATCGAAATCATCAAAGTGTACACATTAAAGAAGCTACATTCCAATGTCTTAAATGTCCGAAGAAATTTAAGACTCATGCCAGACTTCAACATCACCAACTTTATCATGATCCTGCAAGAATCgaagaattaaaacaaagaTTCCCTTGTGAAATTTGTGGTCGAAGATTCCCTAGAAAATATGCATTGGATCGTCACATGTTAACACATACAGGAATTCGACCATGGGTTTGCACTATTGAAGGATGCGACCGTTCATTCACACAAAGTAATGATTTAACTAAGCACATCAGGACTCATGTTGGAGAAAATTCATACAGATGCGAATATCCTGGTTGCACGCAaggatttaaattgaaagcagaTCTACGATATCACGAAAATCTAGTCATCGGAAACACCAATAAAAAATTGCCAAATGTTAATTTTGAACTTCCAGTTGAAGATGATGAGTTCCTTAAAGAAGGCTTATCACTCATTGATTCAGCACGAGGTAATCTCGACATGTGCACCCATCGCGTTGTTGCCTCCttaaaaaagaattgcaaTCAGTTGAGTTCGGAAGAAGTCGGCAAAATTTCCGTTATGATGCTCAACTGTCAGCTGAGTATTGAAGGACGAAAAATTTATCCATGTACACCTGAAATGACACTTCAACAATGCACAATCGGAATGGATTCTGACATTTACCAAATCTACAACTTTATGAAACATCGTGCTGTTGGAATTTGTTCAGCATTCAAACAAGGACAATTTAAAGCAATGACAGAAATGACAGTAAATCGACTAATGGAGGCAGCAAAGTCACAATTGTCAGTAATGCAAGAAGCCattaaaaatcagaaaataatttctgaacTGAGTGTAGAGACCATGAAAGAATTCGTGGAAAATGacgaaaaaattaaagaatcgCAAGTTCAAAGCATTGACAAGTTGAGAGAAGCTGGAAATCTTATTGAAGATAATATCCAAACACTGCAACATGAGTTGGAATTGCGACACAAATcagaagagaaattaattgaaattgataagtCAACAGACGAGATTTCATCGAAACTCATTCAACACACATCGCAACTTCATGAAGGTCACAATAAATTACTTAAAGAAGTTGATGTCATCGCTGAAAATCTCCACAAACGGAATCAAGAATTATTAAGTCAATATAatcaaactttcaaatttttaaacagCTTCAAAACAATCATGTTCGTGTTGTCAACTTTCAATGACATTGGATTGGAAATTACTGAAGAATTTATCGCCTTTATGTGCATTAATCTGATTTATTTTACTTGTGGAATGATTTTTCTAATGTTTATCGATGCTCAAACAAGATCAAAGCTTGTTCTAATGAGTTTATTCGGACTAAATGCCATCGCTGCATACACAAAATCAAAACTCGCTTTACTTCCTTTGAACATTCTCCTTTGGATGCTTTATTTAAcattgaaaattttagcAGCTTTAACACGTCGAATCCGTAAACTCAACCTTTTTAATCTTCGATTCAAATCAAAGCCacagcaacaaaaagaaaaggaatctGATGATGAATCTGATGACGAAATTGTCCAAGCCTTCTTGTCAGAAGAGTCGAAACTTTCAGCTGCTGTTTGTCCTCCTAAAAAGCTGAAAACAAAACCAATCCCTGATATTGATGATTCTAACATTCAACACCCTTCAACATTGAACAAAACAGCTCCTCCAGTTCTCATCAATCGTCCAGTGACTCCAGCAATGAGACGAGTCATGAATGAAAGCTTCGTAGCAACACCACAAAGTCGATCGGCAACGCCATTTTTTGTTGACATGATCGACAGAAAACAATGCACAGCATTAACTAATAAAGGTTTGCAGTGTCGAAACGCTGCTGAACTTGGATTCCTAAAATGCCGTGTTCATAACTattaa
Protein Sequence: MCLESLSELIAISVFDKRKGKSIHSWINLLIPELSISINDDLPKTICYICLQTVLNACELRSRSIKNEKLLQSQLLSNVQIKSEISEYVKSEICIKTESEENYFEKDTNDDSNIWFVEDQFRSDNSETTNINKSTKTRVKLNKASTNALRKFNLNPNVWPKTIFHCDICENHGEYRILDKKSKLIRHMKSHIRGTVRFGLNNAEIYQNRQLAKQKIANAYSNLAYDKKLKQCKVCGFRESTLRLLNLHTYIHCDYVEEHQEPDQRFTCIACTFETFDENDLKLHVLSHQFDFDSNTKLIMCTKCTYTFDSYAGIEKHSSQHNERITHRCLKCGSKFAYGMKLLRHLKNHETTYFCDLCDYTAIAKTKITKHLAATHMKQYSLCPICGKILKNADGLQYHMKTHEIKKKFKCLFCPKEFRLARHYRDHQGVHTKEATYQCLLCPKKFKTFARLTYHQRFHDPEKIRLQREKHRCVTCGKTFLTSSALKRHTVTHTGLRPWICTIEGCDRSFTQSCDLKKHMRGHVGENVYKCEHFGCNQAFKYQAELRLHESVHYVNQKGRSITYLIRVIIPELNISENDCLSKKICHVCLNTIFNACELRDESIENDDRMRRQMTEDIFVKVEPETEPFVKIKEEDDNDDDMELSYGEAFPLELKAEEISSSDDDEQSKKSAKTRNPRSKCRERKSFLSCEACEATCGRIKIFKSRSALDQHMKYHFEGSFTSKPRIIPEREINDFYEMRQKKPVKPLPWLKCTKCPARFKKHSWLDRHMEQHGDEEDKKCKKCDLQFANFKELRLHSYFHCDYVEEYHEIGPHYFECSLCAFRSLIEDELKNHLFSHESEFNNTKVIVCIKCSYTINDFRTLELHSSIHNEILTHRCVKCGKKFAYGDKLLRHLKRYKYCYTCDLCGHLERLKGSMEDHMCVVHKKDLTFLCPFCGITEKSNEGLKCHIKRNHEVNKKFQCSFCPKSFRTPIHYRNHQSVHIKEATFQCLKCPKKFKTHARLQHHQLYHDPARIEELKQRFPCEICGRRFPRKYALDRHMLTHTGIRPWVCTIEGCDRSFTQSNDLTKHIRTHVGENSYRCEYPGCTQGFKLKADLRYHENLVIGNTNKKLPNVNFELPVEDDEFLKEGLSLIDSARGNLDMCTHRVVASLKKNCNQLSSEEVGKISVMMLNCQLSIEGRKIYPCTPEMTLQQCTIGMDSDIYQIYNFMKHRAVGICSAFKQGQFKAMTEMTVNRLMEAAKSQLSVMQEAIKNQKIISELSVETMKEFVENDEKIKESQVQSIDKLREAGNLIEDNIQTLQHELELRHKSEEKLIEIDKSTDEISSKLIQHTSQLHEGHNKLLKEVDVIAENLHKRNQELLSQYNQTFKFLNSFKTIMFVLSTFNDIGLEITEEFIAFMCINLIYFTCGMIFLMFIDAQTRSKLVLMSLFGLNAIAAYTKSKLALLPLNILLWMLYLTLKILAALTRRIRKLNLFNLRFKSKPQQQKEKESDDESDDEIVQAFLSEESKLSAAVCPPKKLKTKPIPDIDDSNIQHPSTLNKTAPPVLINRPVTPAMRRVMNESFVATPQSRSATPFFVDMIDRKQCTALTNKGLQCRNAAELGFLKCRVHNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -