Cmar015025.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- ZFY
- Assembly
- GCA_900005825.1
- Location
- CVRI01000073.1:289905-292149[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.81 60 4.6 4.6 2 23 55 79 54 79 0.84 2 19 0.055 4.1 8.3 0.1 3 23 90 111 88 111 0.95 3 19 0.17 13 6.7 0.1 7 23 124 140 118 140 0.85 4 19 0.00014 0.01 16.5 3.1 2 23 147 168 146 168 0.97 5 19 0.0015 0.11 13.2 1.0 1 23 172 195 172 195 0.94 6 19 0.025 1.9 9.4 5.7 1 23 201 224 201 224 0.92 7 19 0.0049 0.36 11.6 0.8 1 23 231 253 231 253 0.95 8 19 1.4e-05 0.0011 19.6 3.4 2 23 260 281 259 281 0.97 9 19 0.002 0.15 12.8 0.3 1 22 287 308 287 308 0.97 10 19 0.0029 0.22 12.3 0.9 1 23 424 446 424 446 0.98 11 19 0.00029 0.022 15.4 0.6 1 21 452 472 452 475 0.90 12 19 0.0032 0.24 12.2 2.3 1 23 486 508 486 508 0.98 13 19 0.00014 0.01 16.5 0.1 1 23 515 537 515 537 0.96 14 19 0.013 0.97 10.3 3.9 1 23 543 566 543 566 0.92 15 19 3 2.2e+02 2.9 0.5 3 23 575 595 574 595 0.83 16 19 0.31 23 5.9 1.5 1 23 604 627 604 627 0.93 17 19 0.72 53 4.8 0.8 1 23 636 659 636 659 0.90 18 19 4.5e-05 0.0033 18.0 2.0 1 23 665 687 665 687 0.99 19 19 9.1e-05 0.0068 17.0 0.9 1 23 693 716 693 716 0.94
Sequence Information
- Coding Sequence
- ATGACTTCAAATTATTATGTAGAAAATATCAAGGAAAGTGCATCAGATGTGAGTGATATTCAGAAGCATTCATTAAGGCCCCAAAGagaacgaaaacaaaaaataaatttaataaatgacaTTGTTGATCAAACaatttgtaaaagaaaaattaaaagatatcACTGCATCAAGTGTCATAGGAGAAAATCATTTACATCACAAACCCAACTTGACCGTCACATTGCAAATACTCACAGCAAAAAGATTAATCATGGAGTGATAATCTGTGAGATTTGCTCAGCTGTACTCAAATCTGAAGCTTTTTATAAACGACATTTGATCACTAAACATCCACAGACTCCCAAAATCTACATTTGTGATTATGATGGCAAACAATTTAACGCAAAAGATTATCTTCGAATTCACATGGATCGTCatagaaaaaatcaaattcttaCATGTGATATTTGTACAAAATCTTACATCAGCTTACATACATTTAGAAGACATTTAAAAATGcATATTGAAAAGCATATTTGTAGTGCCTGTGGAATGATGTTTAGCACAAAAATCTTGcttcaaaatcattttgctACGAAACATACTTTAGATCTTCCCTTCAAATGCAACCACTGTACAAGAATGTTTCCAACAAAAACTGCCAGGAATAATCATCACTACCAAATACATAAAAGTAAAGAACTTcattttaaatgcaatttgtGTAATGTcttctttgaaatgaaagaggAATTGAGAATTCatagttttattcatttcgaCGGTGAAATTAAAACGTGCCATGAGTGTGATCAAATCTTTAAGAATAATCGCCTTCTTAAAATTCATATGCAGAAACATCAAAgcgagaaaagctttcaatgtgAAACCTGCGGTgattatttcacttttaagaCCGGTCTTGCCAAACATATTCGAATGAATCGCTGCAAAGGTCCAAAATTGAAAGCAGAATCCGATGAAACGAAAGAATTAGATCAAGTGGATATTGCTGAAATTGCTAAGAATCAATTAAATCAAGTAACAGCACCATCTAGAAAATATCCCCAGAAAGAAGACACgattgatttattaaaagatataaaaagtGGAAAAGAAGAATCGGAATCAGAGACTGAAGATTTGTTTGGTAAATTTTTTGACGATGTTAAAGacgagaatgaaattgaaaacgaaCCAAATGAGAAGTCACTAAAAACACGATGGATTCGTAAGAGAAAGTCCCcacaatcaataaaattgcGAAATGGTCGTCCACATCTTATTTACATTTGTGATTTTTGTGGTGAAAAAGtcaaatttaagaaagaaattttaaagcacATGAAGTTGCATTCAATCTTCCAAAAATACAAGTGCAAAGAATGTCCGGAGGCGTTTAAAAGtcgaagaaaactttttgaacaTTCAATTGATATTCACGAGGTCAAGCCACAGGTGCTTGTTGAAGCTTACACATGTGAATTGTGTAACAGgaaatttgatataaaaagcAAATACGAAACACATAAACTCAGTCACGATGATAATGCAAGAAAATACATTTGTTCGATTTGCAATGCTGGATTTAAAAGTGTTGGAAATTTAAGAAGACATGAAGCGATTCATGCTttgacaaaagattttcattgttcaaAATGTTCAAAGAGTTTCAAGACAATTTTATCACTGAAAATTCATAACGAATCGAAACATGGTGTGGTGAAAATTTACGTCAATTGCCCATTTTGCAAAATTATACTTGCGGAGAAGAATTTGAAGCAACACATCAAAAACATGCACACTGAAGAAGGTCAAGAGAAGCCTTTCAGTTGCTTCATTtgcatgaaaactttcaagacGGAAAAACTTGGTCAACGACATTACGAGTCAGTTCACGAACCGAAGAATCAAGGAATTGCTTATCTTTGCAGTGAATGTCCTGAACTTCAATTTTATCGCCAACGCGATCTTAAAATGCATTCATTCATGCATTACAATGGAACAATCTATCAATGCGACATttgcatgaaaatgtttaagagTAAACGACTTTTGACACTTCATCAATCAACTCacaaagaagaagtaaaatattcaTGTAAAGAATGCAATTTGGAATACAAAACTCGGAGCGGTCTTCGGAAGCATGTCGTGAAACTTCACGAAAacattaataaagaaaaagatttcattttatcataa
- Protein Sequence
- MTSNYYVENIKESASDVSDIQKHSLRPQRERKQKINLINDIVDQTICKRKIKRYHCIKCHRRKSFTSQTQLDRHIANTHSKKINHGVIICEICSAVLKSEAFYKRHLITKHPQTPKIYICDYDGKQFNAKDYLRIHMDRHRKNQILTCDICTKSYISLHTFRRHLKMHIEKHICSACGMMFSTKILLQNHFATKHTLDLPFKCNHCTRMFPTKTARNNHHYQIHKSKELHFKCNLCNVFFEMKEELRIHSFIHFDGEIKTCHECDQIFKNNRLLKIHMQKHQSEKSFQCETCGDYFTFKTGLAKHIRMNRCKGPKLKAESDETKELDQVDIAEIAKNQLNQVTAPSRKYPQKEDTIDLLKDIKSGKEESESETEDLFGKFFDDVKDENEIENEPNEKSLKTRWIRKRKSPQSIKLRNGRPHLIYICDFCGEKVKFKKEILKHMKLHSIFQKYKCKECPEAFKSRRKLFEHSIDIHEVKPQVLVEAYTCELCNRKFDIKSKYETHKLSHDDNARKYICSICNAGFKSVGNLRRHEAIHALTKDFHCSKCSKSFKTILSLKIHNESKHGVVKIYVNCPFCKIILAEKNLKQHIKNMHTEEGQEKPFSCFICMKTFKTEKLGQRHYESVHEPKNQGIAYLCSECPELQFYRQRDLKMHSFMHYNGTIYQCDICMKMFKSKRLLTLHQSTHKEEVKYSCKECNLEYKTRSGLRKHVVKLHENINKEKDFILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -