Cmar020047.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000055.1:108303-112845[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.1e-05 0.0023 18.5 0.7 1 23 168 190 168 190 0.95 2 15 0.0029 0.21 12.3 3.3 1 23 196 218 196 218 0.97 3 15 3.6e-05 0.0027 18.3 0.9 1 23 354 376 354 376 0.97 4 15 0.1 7.5 7.5 0.1 1 23 383 406 383 406 0.91 5 15 1e-05 0.00076 20.0 3.4 3 23 468 488 466 488 0.96 6 15 0.007 0.52 11.1 0.0 3 23 513 533 513 533 0.97 7 15 1.1 84 4.2 0.6 1 23 539 562 539 562 0.90 8 15 0.024 1.8 9.4 1.8 2 19 570 587 569 588 0.95 9 15 6.3e-05 0.0047 17.6 5.1 1 23 597 619 597 619 0.97 10 15 0.0087 0.65 10.8 1.1 3 23 626 646 624 646 0.96 11 15 2.6e-06 0.00019 21.9 1.0 1 23 652 674 652 674 0.98 12 15 0.0043 0.32 11.8 0.2 3 23 682 702 680 702 0.97 13 15 0.00051 0.038 14.7 2.2 1 23 708 730 708 731 0.95 14 15 0.92 69 4.4 0.2 1 23 745 767 745 767 0.95 15 15 0.0049 0.36 11.6 0.1 2 23 1067 1088 1066 1088 0.96
Sequence Information
- Coding Sequence
- atggatCACAACTTTATTTTGTGGGAACAAAGCGATGAACCCAATTATGACGAAATAATTGAGAACGAAAATGACATCGAGGAATTAAATGATATAATGGAAGAACAAGTTGAAGGGTATGAAGAAGTGAATATGTTAGAAGAGACATCGGAGACCGATGAAGCTTATTATATCGATGAAGGGATGATTTCAGTTccacaagaaaatttaatttatcttgaCGACAGCATTGTTAATGGAACATCTCGAATTGGGGTTGGTATGAGTCACTTGATTGAACAGAGAGTTGAGGAAgcggaaaataaaatcattggtGATCAGGACGATCAAGAATACACAGCAACAGTCGAGGAAGTAATCACCGAAGAATGGCCACTGGAAGGCGAAGACATGGTTCAAGTTGCGATGGAACAAGTTGTCACTTCTGATAATTTTCAAGAAGACGACATTGAGACTGTCCCATTGCATACTGATCAAGATGAGTACACGACATCAAGACCATATCCTTGTGATTTTTGCAGTCGACGCTTTCGTAAAAAAGCAAATCTCATGAATCATATGGTGGCACATCAGAATGTTCGTCCACACATGTGTAATCTATGTGGATCACGTTACGTTCGAAAATGTGATcttataaatcatttaaaaattcatgcgTACAATATCGAAGACGAATCATCAGGACCAAGTACAGGTGGCAAGAAGAAACCACCAAAATTCGatgaacttaattttcttgATGAAAGTTTCGATGATCTTCCCGACGACAATGACTTTGATTATAATCATTATTCAAAACCAACATCAACAACTGTTCAAATGCAGCAATCAAAAGCATCAAAAATGAGTGCAAAAAAGAAAGTAGGAAAGAAAACGACGACAAATAAATCAACAGCAATGAAGTTTGAGAAGTTGTCGAAGAAGAAAGAACTTTCAAAGGAAGTTAATATAACAATTGAAGacattgaaaacaataaaattgagCAGCAGGATAATATGCAACAACAGTTATGTAATGAATATGTTGAGAAATATCCTATTACAGATCCAAGAAAGCCATTTGTATGTCAACACTGCGGTGTTGCATTTACAAGAGAAAAAGCACTCGAGTCACATACAAAACTTCATGCAACGCAAGAGTCAACATTTGATTGTGAAGTTTGTGGTGATTCATTTTATGACGGAACATCCTTAGAAGAACATTTAGAATTTCGTCACGATTATTCTTCTCGTGTTCGTCGAACGGGAGGGAAGTCAGGTTCAAGTAAGACAACATCACATACAGCCAAAGTATTGGAGACAATGGACTTTGATGATAGCAACTCGGAATATGATCCCGACAAGAACAATGAAGACGATTtggatgatgaagatgatgaggACGAGGATGCTGGTCATTTATGTGACAAATGTCATATGGCATTCAAAAACGCTGACGCACTTAAAAAACATATTCGAACGCATTTCTTGAAGTCTGAAGTGCTGACAGATGAAGAAGGTAATCGACCATTAACAACAGATGGAACATCTCTCGGTTGCAATGTTTGTGGTGAAAGTTTTACTGAAGCACTTGATCTTCTTGCTCATGCTGAAATTCATGCACGCTTTCAACCGTTTAAATGTCAATTGTGTGGTGATACattctttgaagaaaacaaaattaaaattcatttaatggaTAATCATCAGAATGAATTAACAGAATCATCTTGTCGTTTATGTGGAAAACAATGTCGCGATCAACGTTCACTTATCAAACATTCGTGGGAACactcaagagaaaaaaatcatcctTGTTCGAAATGTGGCAAAACGTTTCATAACAAAGCAAGATTAAAGCGCCACATCTCAAGCCATCGTAATAAAAGTGTTATTTGTGAGATTTGTCATGAAGAGTTTCCCGATGGACGTCAGCTGATGAATCATCGACACTCGCATACAAAAGCTAATCAATTTCCCTGTCATGAATGTGGAAAAACGTTTGGGTCGCGAAGTTCACAACAAATTCATATTCGAATTCACACGGGTGAACGTCCATATGGATGTCGATTTTGTTGGAAAGCATTCGCTGATGGTGGCACATTACGTAAACATGAAAGAATTCATACAGGAGAAAAACCGTATTGCTGTCTTGTATGTCCTCGTGCATTTAACCAGCGTGTTGTGTTGAGAGAACATATTCGTTCACATCATTCAGCACCCGATCCAGTTAATGGAACAACTCTTACACCTTACTTTTGTTCATTGTGCGGTGATTTGTTTGCTGTTTCATTGGATTTGATTCATCATTTGATCGAGCACAGTGATCGAAGCACAGCAGCTAAGAGAGTTCAACCAGCTGGTCCGAGAAAATACAAGAGAAGGAGAAAGTTGAATGGTGATAGTGACAATAGTGAGAATGTCACGAATGTTGAatcgaaaatgaattttcaacgTCCGTTGAAGAACACAATTACaaagcaaacaaatgaaagtgatttgaagaataatttgttATCAGCTTTTCCAATTTCGAAAGATGTCAACAAGTTTGATGAGTTCAAGTTGCcagatgaaatttttcaagctGTTGGACAGAAAATTCCTTCGACAATTGGAAAGAAAGACGTGGGCGGTATGAAGCAAAACTTAAGAGCATCAACTTCTGCAGGTTCAAGACCAAGAATGATTTACACACAAAAGACAAAACTTACTGCAACTGACGGGAAgcgaaagaagaaaggaatgaTTCAAAAACAGGTTTTACAACCGAAAATGAAACCAATTCGCGCAAGTCGTCAagtaaaacaagaaaaattggaCGAAGAAACATTCGAACATGATGAATCGAGTGAAACTTGGTCGAATGATGATCCAAATGAAGACGTTCTCGATACTTTGCttaagagagaaagaaaattatcggAAAAGTTCACAATTGATTTAGTCAACGATTTGCAAGAAATTTTAAGATCGCCACTGAAATTAAGTGAAGACAAGCATCAGTCAATGgttgaagaagatgaagacaaAACATTCGCAACTAATCGAAGATCATGTCGTCAAGTGAAGTCTCGTTATGGGTCAGCAGTACGGAAGCATCCGAtgaaaaatacaaacaaaagGAGAATTTCGTCGCCATCTGAGACGTCAGAGGATGAAAATGACGATGacatggaaaaatatttcatcaagcAAGAATTACCAGACGAAAGCATTTCTTGTGGCATTTGCGGGGATTCATTCATGACACAAACTCAACTCCTTAACCATGTATCGATTCATATATAG
- Protein Sequence
- MDHNFILWEQSDEPNYDEIIENENDIEELNDIMEEQVEGYEEVNMLEETSETDEAYYIDEGMISVPQENLIYLDDSIVNGTSRIGVGMSHLIEQRVEEAENKIIGDQDDQEYTATVEEVITEEWPLEGEDMVQVAMEQVVTSDNFQEDDIETVPLHTDQDEYTTSRPYPCDFCSRRFRKKANLMNHMVAHQNVRPHMCNLCGSRYVRKCDLINHLKIHAYNIEDESSGPSTGGKKKPPKFDELNFLDESFDDLPDDNDFDYNHYSKPTSTTVQMQQSKASKMSAKKKVGKKTTTNKSTAMKFEKLSKKKELSKEVNITIEDIENNKIEQQDNMQQQLCNEYVEKYPITDPRKPFVCQHCGVAFTREKALESHTKLHATQESTFDCEVCGDSFYDGTSLEEHLEFRHDYSSRVRRTGGKSGSSKTTSHTAKVLETMDFDDSNSEYDPDKNNEDDLDDEDDEDEDAGHLCDKCHMAFKNADALKKHIRTHFLKSEVLTDEEGNRPLTTDGTSLGCNVCGESFTEALDLLAHAEIHARFQPFKCQLCGDTFFEENKIKIHLMDNHQNELTESSCRLCGKQCRDQRSLIKHSWEHSREKNHPCSKCGKTFHNKARLKRHISSHRNKSVICEICHEEFPDGRQLMNHRHSHTKANQFPCHECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYCCLVCPRAFNQRVVLREHIRSHHSAPDPVNGTTLTPYFCSLCGDLFAVSLDLIHHLIEHSDRSTAAKRVQPAGPRKYKRRRKLNGDSDNSENVTNVESKMNFQRPLKNTITKQTNESDLKNNLLSAFPISKDVNKFDEFKLPDEIFQAVGQKIPSTIGKKDVGGMKQNLRASTSAGSRPRMIYTQKTKLTATDGKRKKKGMIQKQVLQPKMKPIRASRQVKQEKLDEETFEHDESSETWSNDDPNEDVLDTLLKRERKLSEKFTIDLVNDLQEILRSPLKLSEDKHQSMVEEDEDKTFATNRRSCRQVKSRYGSAVRKHPMKNTNKRRISSPSETSEDENDDDMEKYFIKQELPDESISCGICGDSFMTQTQLLNHVSIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -