Cmar018859.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- Zbtb41
- Assembly
- GCA_900005825.1
- Location
- CVRI01000043.1:834797-837379[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00028 0.021 15.5 1.4 1 23 210 232 210 232 0.97 2 23 0.1 7.8 7.4 2.4 1 23 240 263 240 263 0.96 3 23 4.7 3.5e+02 2.2 0.1 2 20 270 288 269 290 0.89 4 23 0.8 59 4.6 0.4 2 23 295 316 294 316 0.82 5 23 6.6 4.9e+02 1.7 0.2 5 13 316 324 313 325 0.89 6 23 0.041 3.1 8.7 3.9 1 23 326 349 326 349 0.96 7 23 0.049 3.6 8.5 0.2 2 21 356 375 355 376 0.92 8 23 0.0021 0.15 12.8 0.2 2 23 381 402 380 402 0.93 9 23 9.3e-05 0.0069 17.0 1.5 1 23 439 462 439 462 0.92 10 23 0.0011 0.084 13.6 1.4 2 23 469 491 468 491 0.95 11 23 0.00021 0.015 15.9 0.2 2 23 494 515 493 515 0.93 12 23 4.1e-05 0.003 18.1 1.3 1 23 521 542 521 542 0.99 13 23 0.0041 0.31 11.8 1.6 1 23 552 575 552 575 0.96 14 23 0.014 1 10.2 1.4 1 20 581 600 581 602 0.94 15 23 0.045 3.3 8.6 0.1 2 23 607 628 606 628 0.91 16 23 1.1e-05 0.00078 20.0 1.1 1 23 632 654 632 654 0.99 17 23 0.014 1 10.2 4.3 1 23 664 687 664 687 0.96 18 23 0.0096 0.71 10.7 0.2 1 21 693 713 693 714 0.93 19 23 0.071 5.3 7.9 0.1 2 23 719 740 718 740 0.92 20 23 0.0033 0.24 12.1 1.9 1 23 746 767 746 767 0.90 21 23 0.0037 0.28 12.0 1.3 1 23 777 800 777 800 0.95 22 23 0.013 0.97 10.3 1.0 2 23 807 829 806 829 0.95 23 23 2e-05 0.0015 19.1 3.4 2 23 832 853 831 853 0.96
Sequence Information
- Coding Sequence
- ATGCGCGTTAAAAAGAATATCTTGAAAAAACAAGATTTGAATGCCGTTGTGGTTCTCGAAGACATCTTTTCTGACTTCAGTAATTGTCACGAGAAATGTCGATTGTGTTTCAAAGAAGCTGCTGAGCGAAATTCAAGAATACAAATCACAGATGACATTCAGAACAAAATTCATTCTGTCCTGCAAATTCACTTGTCATATGATGGAATAGGATCAGATTTCATATGTTCAAAatgtgaaaacaatttaaatatttcccatCAGTTTACGTTCAAAGTAAATGAGAAATTGAAGTGTTATGAGAAGTTTAGTAGCAAAAAAGTTGAACATTCCGATGCCGATGATGAACTACCAGTCCCATTTCAGGAGAATTTAATCaaagttgaagatgaattgAATTTGTCAACAGAGATGGAATTGGTTTCACCAATGAgtgaaatcaaagaagaaagcTCTGAAGATGGAAGTCCAAGCGAATCTGAAGGTGGGAAGAATGAGGAGACAATTGAACGTCAAAAGCAGGATCAGTCAAATCCTCAATTCGTTCCACGTGATGTTGGTGGacaagttttaaaaaatggTGACACGTTCCAGCGACGTCAATATATAAGAGATTTCAATAGTAAATTCCAttgtgatatttgtggaaaaacaatgaaaacaaaatcgaACATTTCTATTCACTTGAACATCCACAAAGAATTTagaacaaaagaatttcattgtcaTATATGTGAAAGTTCCTACCTTAGTCAACCTGGACTTCAAAGACATATATTaaagaatcatgaaaaatcaaaGCATCTCACATGTTCATTATGTGGAATAATTCGCATGACTGAAAAAGGCTTAGAAAATCATAAGTTACATCCCTGTCTTTTACCTTGTGAGATATGTGGAAAAATGATTCGAAAGAATATAGTCAAACGACATATGAATGAAGTGCATTGCCACAAAGAATTCagaacaaaagaatttcattgtcaTATTTGTGAAAGTTCCTACTTTAGTCAACTTGGACTTCAAAAACATATATTaaagaatcatgaaaaatcaaaGCATCTTACATGTTCATTATGTGGAAGAATTTCCATGACAGAAAAAGCCTTAAAGAGACATAAGTTACGTCCCTGTCGTTTACCTTGTGAGGTGTGTGGAAAAATGTTCACAATGTATACAATCAAACGACATATGAATGGAGtacatttcaatttgaagcCAATTAAATGCTATATTTGTGATAAAATAAtctgtaaaaataattttgcgaAACACATGACTACGCATAATGATTTGGAATACAGAAGAAAAGATCATTATTGTCAAATTTGCGGAAGGTCCTTCTTTAATAAAGCAGCACTTAAAATCCACACATATAATGTTCATGAAAAGCCGAAGCATCTTACCTGCTCACTATGTGGAAGAATTTGCAGGACCGAAGAAGGCTTAAAAAAGCATAAGTTACGTCCTCATTATTTACCTTGTGAGATatgtggaaaaacttttagaaaGGATAGACTTAAGGAACATCTGAATGGAGTgcatttcaaaattaaacgATATCAGtgcgatatttgtggaaacaaattcgataaaaaatatcttgcTCGTCACATGACTACGCATCTTGATTTGGAAcacagaagaaaagaatttcattgtcaaattTGTGAAAGTTCCTACTTTGATAAAGAAACACTTCAAAGACATGTATTAAGTATTCATGAAAGATCAGGACTTTTTACCTGTTCAATATGTAGTAATAATTTTCGGACCGAAAAAGGCTTAAAAAACCATAAATTCCGTCCCTGTCGTTTACCATGTGAGGTGTGTGGGAAAATGGTTAAAAAGGAGAGACTTAAGCGACATCTGATTGAAGCGCATTTTCAACCATATCAGtgcgatatttgtggaaaCAAATGCAGTAGCAAGTCAGTACTGGCTCGTCACATGATTACGCATATTGATTTGGAACACagaacaaaagaatttcattgtcaaatttgtgaaatttcctactttaataaaaaaacacTTCGAAGTCATACATTAAAGTatcatgaaaaatcaaatcattttacCTGTTCATTATGTGGTAGAATTTACATGACCGAAAAAGGCTTAGAAAATCATAAGTTACGTCCCTGTCGTTTACCTTGTGAGTTTTGTGGAAAAATGATTCGAAAGGAGGGACTTAAGGAACATCTGAATGGAGTGCACTTCAATATAAAACCATATCAGtgcgatatttgtggaaaCAAATTCTGTAAACCAAGTCTTGCTCGTCATATGAATACACATGTTGGTTTGCAACACAGAAGGAAAGAATTCCATTGTCAAATTTGTGAAAGTTCCTACTTTGATAAAGCTGGACTTAAAAGACATATATTAAATATGCATGAAAGACCAAGTCATCTTACCTGTTCAATATGTGGAATAACTTGTTGGACCAAAGAAGGCTTGAAAAAACATAAGTTACGTCCTCATCGTTTATCTTGtgatttttgtgaaaaacGTTTTTCTACTAAACACTCCCtacaaattcatcaaaatatgCATAGAGAGAGAAATTTGGCctgttga
- Protein Sequence
- MRVKKNILKKQDLNAVVVLEDIFSDFSNCHEKCRLCFKEAAERNSRIQITDDIQNKIHSVLQIHLSYDGIGSDFICSKCENNLNISHQFTFKVNEKLKCYEKFSSKKVEHSDADDELPVPFQENLIKVEDELNLSTEMELVSPMSEIKEESSEDGSPSESEGGKNEETIERQKQDQSNPQFVPRDVGGQVLKNGDTFQRRQYIRDFNSKFHCDICGKTMKTKSNISIHLNIHKEFRTKEFHCHICESSYLSQPGLQRHILKNHEKSKHLTCSLCGIIRMTEKGLENHKLHPCLLPCEICGKMIRKNIVKRHMNEVHCHKEFRTKEFHCHICESSYFSQLGLQKHILKNHEKSKHLTCSLCGRISMTEKALKRHKLRPCRLPCEVCGKMFTMYTIKRHMNGVHFNLKPIKCYICDKIICKNNFAKHMTTHNDLEYRRKDHYCQICGRSFFNKAALKIHTYNVHEKPKHLTCSLCGRICRTEEGLKKHKLRPHYLPCEICGKTFRKDRLKEHLNGVHFKIKRYQCDICGNKFDKKYLARHMTTHLDLEHRRKEFHCQICESSYFDKETLQRHVLSIHERSGLFTCSICSNNFRTEKGLKNHKFRPCRLPCEVCGKMVKKERLKRHLIEAHFQPYQCDICGNKCSSKSVLARHMITHIDLEHRTKEFHCQICEISYFNKKTLRSHTLKYHEKSNHFTCSLCGRIYMTEKGLENHKLRPCRLPCEFCGKMIRKEGLKEHLNGVHFNIKPYQCDICGNKFCKPSLARHMNTHVGLQHRRKEFHCQICESSYFDKAGLKRHILNMHERPSHLTCSICGITCWTKEGLKKHKLRPHRLSCDFCEKRFSTKHSLQIHQNMHRERNLAC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -