Cmar018558.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000043.1:843797-847979[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.3e-05 0.0039 17.8 2.2 2 23 251 272 250 272 0.97 2 20 7.4e-05 0.0055 17.3 1.9 1 23 282 305 282 305 0.95 3 20 0.68 50 4.9 0.3 2 20 312 330 311 332 0.89 4 20 0.0093 0.69 10.7 0.1 2 23 337 358 336 358 0.92 5 20 0.00083 0.062 14.0 2.2 1 23 364 385 364 385 0.98 6 20 0.0032 0.24 12.2 1.4 1 23 395 418 395 418 0.95 7 20 0.00035 0.026 15.2 0.8 2 21 425 444 424 445 0.93 8 20 0.0042 0.31 11.8 2.0 2 23 450 471 449 471 0.94 9 20 0.0076 0.57 11.0 2.4 1 23 477 498 477 498 0.96 10 20 0.0061 0.45 11.3 1.4 1 23 508 531 508 531 0.95 11 20 0.00035 0.026 15.2 0.8 2 21 538 557 537 558 0.93 12 20 0.0034 0.25 12.1 2.2 2 23 563 584 562 584 0.94 13 20 0.0044 0.33 11.7 2.1 1 23 590 611 590 611 0.97 14 20 0.00011 0.0081 16.8 3.8 1 23 621 644 621 644 0.94 15 20 0.0029 0.21 12.3 0.2 2 23 651 673 650 673 0.95 16 20 0.00048 0.036 14.8 0.1 2 23 676 697 675 697 0.95 17 20 9.1e-05 0.0067 17.1 0.8 1 23 703 724 703 724 0.99 18 20 0.057 4.2 8.2 5.0 1 23 734 757 734 757 0.96 19 20 0.0055 0.41 11.5 0.2 2 23 764 786 763 786 0.95 20 20 0.0024 0.18 12.6 5.0 2 23 796 816 788 816 0.97
Sequence Information
- Coding Sequence
- atgttcatcatcatcatcagatcaaggacaggcccatataggaaccaccatcaaatgccgaagcatttgagggcaatgAGgtgtttcatcttcaactcCGTTCCGCCTAGAGATTCCAAgaTGCGCGTTAAAAAGAAGGTCTTGAAAAAACAAGATTTGAGTGCCGTAGTGGTTCTAGAAGACATCTTTTCTGACTTCAGTAACTTTCATGAGAAATGTCGCTTGTGTTTCAAAGAAGTTGGTGATCgaaattcaagaaaacaaatcaCAGATGAAATTcagaacaaaatttattccgTCCTGCAAATTCACATGTCATTGGATGGAATGGGATCAGAATTTATATGTTCAaaatgtgaaaacattttaaatgtttctcatCAGTTTACgttcaaaataaatgagaaattgaaGTGTTATGAGAAGTTCAGTAGCAAAAAAGTTGAACATtccgatgatgatgatgaactacCAGTCCCATTTCAGGAGAATTTCATTAAGGTTGAAGACGACTTGAATTTATCAACAGAGATGGAATTGGTTTCACCAATGAgtgaaatcaaagaagaaagcTCTGAAGATGGAAGTCCAAGCGAATCTGAAGGTGGGGAGAATGAGGAGACAATTGAACGTCAAAAGCAGGATCAGTCAAATCCTCAATTCGTTCAAAGTTATGTtggtggaaaagttttaagaaatgGTGACACGAACAAGCGACGTCGATGTAAAGGGAATTTCAAAACTAAACTTCAGtgtgatatttgtggaaagAAATGCTGTATTAAAGGAGATCTTGCTAAACACATGATCACACATATTGGTTTGGAATatagaagaaaagattttcattgtcaaattTGCGGAAGGTCCTACTTTTCTAGAAGTGGACTTCAAACGCATATATTAAATAATCATGAAAGACCAAGTCATCTTACCTGTTCAATATGTGGAATCACTTGCTGGACCGAAAAAGGCTTAGAAAATCATAAGTTACGTCCCTGCCGTTTACCTTGTGAGATCTGtggaaaaatatattccaAGAATGTACTCAAACAACACATCAATGGAGtgcatttcaatttgaaacaatATCAGTGCGATATTTGTGGAAGGAAATGTAGTTATACAAGTCTTGCTAAACACATAACTACGCATATTGATTTGGAATACAGaaggaaagattttcattgtcaaattTGTGGAAGTTCCTACTTTTCTAGAAATGGACTTAAAAATCATATattaaatgttcatgaaaAGCCAAAGCATCTTACATGTTCATTATGTGGAAGAACTTTCATGACCGAAAAAGGTTTAAAAAGACATCAGTTACATCCCTGTCGTTTACCTTGTGAGGTCTgcggaaaatttttttttaagaatatgCTCAGACATCATCTGAAAAATGtgcatttcaatttgaaaccaTATCAGtgtgatatttgtggaaaTAAATTCTGCAAAAGAAATCTTGCTCAACACATGATTACGCATATTGATTTTGAAcacagaaagaaagaatttcattgtcaaattTGTGAAAGTTCCTACTTTAATAAAGGGTCACTTCAAATTCATATATTAAACAATCATGAAAAGCCAAAGCATCTCACATGTTCATTATGTGGAAGAACTTTCATGACCGAAAAAGGTTTAAAAAGACATCAGTTACATCCCTGTCGTTTACCTTGTGAGGTCTgcggaaaatttttttttaagaatacGCTCAGACATCATCTGAAAAATGtgcatttcaatttgaaaccaTATCAGTGTgatatttgtgaaaaaaaattctgcaaAATAAATCTTGCTCAACACATGATTACGCATATTGATTTTGAAcacagaaagaaagaatttcattgtcaaatttgcggaacttcttttttcaagAAACAACATCTTCAAACCCATATGATAGGAGTTCATGAAAAACCAAAGCATCTTACCTGTTCAATATGTGGAAGAACTTTCTGGACCGAAAAAGGCTTAGAAAATCACAAGTTACGTCCTCATAATATACCTTGTAAGATCTGTGGAAAAATGCTTAGAAAGTCTGCACTTAAGGAACATCTGAATGTAGtgcatttcaaaataaaaagatatcagtgcgatatttgtggaaaCAAATTCGTTAAAAACTATCTTGCTCGTCATATGAATACACATGTTTCATCAGAAcacataagaaaaaattttcattgtcaaatttgcggatcttctttttttgagAAATGTAGACTTAAATCCCATATGATAAAAGTTCATGAAAAACCGAAGCATCTTACCTGTTCAATATGTGGAAGAACTTGGAGCACCGAAGAAGGCTTGAAAAACCATAAGTTACGTCCTCATTATTTATCTTGTGAATTGTGTGGAAAAATGtgtgatatttgtggaaagAAATTCAGTAGACAAAATATTGTTCGTCACATGAATACACATATTCCATCAGAACACAGGAGAAAAGAtaggaaatttaaaacaaaattgagtCCTACTCGACACATTTTCAGTCATGAAAAATCCACGAATTGCAAATATTCagtaagaagaaagaaaagcaccACAAGACTTTTtCTCATGAAACATTATGATTCAGATTCTGATTTCAATGCAGAAATGCAActCTTCACAATTGTAGCTCAGTAG
- Protein Sequence
- MFIIIIRSRTGPYRNHHQMPKHLRAMRCFIFNSVPPRDSKMRVKKKVLKKQDLSAVVVLEDIFSDFSNFHEKCRLCFKEVGDRNSRKQITDEIQNKIYSVLQIHMSLDGMGSEFICSKCENILNVSHQFTFKINEKLKCYEKFSSKKVEHSDDDDELPVPFQENFIKVEDDLNLSTEMELVSPMSEIKEESSEDGSPSESEGGENEETIERQKQDQSNPQFVQSYVGGKVLRNGDTNKRRRCKGNFKTKLQCDICGKKCCIKGDLAKHMITHIGLEYRRKDFHCQICGRSYFSRSGLQTHILNNHERPSHLTCSICGITCWTEKGLENHKLRPCRLPCEICGKIYSKNVLKQHINGVHFNLKQYQCDICGRKCSYTSLAKHITTHIDLEYRRKDFHCQICGSSYFSRNGLKNHILNVHEKPKHLTCSLCGRTFMTEKGLKRHQLHPCRLPCEVCGKFFFKNMLRHHLKNVHFNLKPYQCDICGNKFCKRNLAQHMITHIDFEHRKKEFHCQICESSYFNKGSLQIHILNNHEKPKHLTCSLCGRTFMTEKGLKRHQLHPCRLPCEVCGKFFFKNTLRHHLKNVHFNLKPYQCDICEKKFCKINLAQHMITHIDFEHRKKEFHCQICGTSFFKKQHLQTHMIGVHEKPKHLTCSICGRTFWTEKGLENHKLRPHNIPCKICGKMLRKSALKEHLNVVHFKIKRYQCDICGNKFVKNYLARHMNTHVSSEHIRKNFHCQICGSSFFEKCRLKSHMIKVHEKPKHLTCSICGRTWSTEEGLKNHKLRPHYLSCELCGKMCDICGKKFSRQNIVRHMNTHIPSEHRRKDRKFKTKLSPTRHIFSHEKSTNCKYSVRRKKSTTRLFLMKHYDSDSDFNAEMQLFTIVAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -