Cmar006023.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000040.1:1255399-1260199[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00023 0.017 15.8 0.1 2 23 127 149 127 149 0.97 2 17 1.3e-06 0.0001 22.8 4.1 1 23 154 176 154 176 0.96 3 17 0.0034 0.25 12.1 3.0 2 23 183 204 182 204 0.96 4 17 0.00028 0.021 15.5 1.9 1 23 208 231 208 231 0.96 5 17 0.06 4.5 8.2 0.5 2 23 238 260 237 260 0.91 6 17 0.0039 0.29 11.9 1.8 1 23 269 292 269 292 0.93 7 17 8.1e-07 6e-05 23.5 2.1 1 23 298 320 298 320 0.98 8 17 0.077 5.8 7.8 0.1 2 21 326 345 325 346 0.93 9 17 0.00021 0.016 15.9 0.5 1 23 503 525 503 525 0.98 10 17 0.012 0.9 10.4 4.2 1 19 531 549 531 554 0.95 11 17 0.11 8.3 7.3 1.3 1 23 565 587 565 587 0.94 12 17 0.0049 0.36 11.6 1.0 2 23 594 616 593 616 0.97 13 17 0.00033 0.024 15.3 2.6 1 23 622 647 622 647 0.96 14 17 0.00067 0.05 14.3 0.1 1 23 685 708 685 708 0.92 15 17 0.0026 0.2 12.4 3.1 1 23 717 739 717 739 0.91 16 17 0.00021 0.015 15.9 2.3 1 23 745 767 745 767 0.96 17 17 0.00029 0.021 15.5 0.5 2 23 773 794 772 794 0.97
Sequence Information
- Coding Sequence
- ATGTCTCTAATTCAAgtggaaatattaaaatatgagGAACAAGATCAgttcaatgaagaaaatggaTTTATTGATTATATTCCCGAAGAAGCGATCTGCGAAGAATATGAATATATTGAAGTAGAAGATCCTGAAAATGGGAAAATTGAGTATATATCAAATATTCTGAATCCGAAAATCATCGGAAGTAAATCAGATAATGAAACGAAAGACAAAACCATCTTCTTAAAACTTAACACTGATCTATACTTTCAAAATAAACGCGAGAAGAAATTCAGTTGCTCAAGCAGGAAATGCAAGAAAGACAACATTAGTTTCGATACACAAGAAGAACTTGATCAACATAATGTTTTTCATCTTGAGCAGATTGTTGCAAATGAATGTCCCATTTGTAACAAAATTCTTGCAAAtcagatgaaattgaatattcatATGGAAACACGACATGTTCCGAAGACTTTTTTCTGTGACAATTGCGGGAAGACATTCCGCAGTAAAGACAATTTAAGGCTGCATATGAGTCATCATCGCAAACACTTCATAGTTGAATGTAAAGCATGTCATAAGAGTTACAAGAGCATGCAGTCATTGAGATATCATCTGCGACAACACTTTGAACATCATCAATGCGAATCATGTGGAAAGGTATTTGAACACAAAAAACTCCTCCTCGGACATATTGCTTCAAAGCATAATCAGGAATTAATGCTACAATGTCGTTTCTGTTCACGAATGTTCTCACGAAATGATGTTCGTGAAGCTCATGAACGTGACATCCACAAAAATGGTCAAATTGGCTCACACTTTAAGTGCAATGAATGCGAATGTGCGTTCGATTTCCGTGATGAGTTGATGAGCCATAAGATTCTTAATCATTATTCGGGAATCATTCACACTTGTGAAGAGTGTGgcaagaattttaaaaagaatagTTTGCTTGAATTGCACATGCAGAGTCACAAAGAGAAGTCGATTCAATGTGATGTTTGTGAAATGATGTTCACCTTCGTCACTGGTCTTGCTAAACATAAGAAACTTGGACGATGCAAAGGACCAGCAAAAGCAGTTAACACACtgtcgaaagaagaaattgcaaTCATTGCAAGAAATCAATTAGAGGAAATTACAGTAAATCATAATCGAAAAGTGCCTGAAGTTGATTTATTCAGTGACATGACCAAAGAGGAACCTGAAAAGCCGAAAGATCCtccaaagaataaaaagaaacctGGAAGAAAACGAAAGATTGTCAGCATTCAAGGCAAGAATATTGAAATCGAATCTTATAGGTTTGTAGATGGTCATCAGATTGAAAAaATGGAAACGAAGAAACCAATTGTCAAAGTTGAATTGCAGAAAAACATCGGAGCTGTTCatattaaaagtgaaaattcagCTGAAACGATTACAAGTTCAAGTGGTCGAATAATAAAACGAAAGCTTCCACTTCTCTTCACTTACTCGCCTTTCAAACCGATCAATCTCACGAAGAAACCAAATATTCCATATGAATGTGACAAATGTGGGATGACACTCGACACGAAAAGTCGTCTTTTGTCTCATCTTAATAGTCACGTTCGTGGACAGAAATATAAGTGCGAGAAATGTGAGAAATCTTTTTGTAACATGATGAGTATGAAGAAACATTGCGCGGCAATTCATCGAGAAGCAAATCCATTTAAAGAGAAACGATTTAAATGTGATAAATGTCCAAAGCGATATTTGACAGAATTTCTTTTGGGACAACACAAATTGTCGCATTTGAATCTGAAGAATCAAAAATGCAATCAATGTTCGTTTGCTACAAACACGATTTATGATCTTAAAAATCATATCAAAAGAATTCATCAGTCggttaaaagttttccatgcACAGAACTAAATTGCGGGAAAAGCTTCAAGCGACGATGTGACAtggaaaatcataaaaaatctgtTCATACGACGATTAAAGTTTATGTCAAATGTCCAGTTTGTGACGTTATCATACTTGAAAAAGGATTACAAAGTCATATGAGTAATCGGCATTCAGAGAAGGGACAAAATCGACCATTCGAATGCAGTATTTGTGGTAAAACGGAACGTtatgaaagcaatttaattcGTCATGTCGAAGCTGTTCACATGCCAACAGACAGAGGAGTGACATATCATTGCCCGCAGTGTCCCCAAACATTCTTTCGAAGACGTGAACTTACATCTCATTCATTTGAACATTACACGGGAGTTGTTCATGTTTGTGAAGAGTGTGGAAATCGATACAAATCGAAGAAAGAGTTAACAAATCATcTTTATTCTCATCGATGTAAGGAATGGCCGTGCACGATTTGCAATACTGTTTTTCAAACGAAATCTGGGCGAGCAAAACACATTAAGAAACACGTTAATGACTCTTATGACATTCGAGATCCATCAGACAGCAACTACATCattgaacaagaagaagttttcattgattaa
- Protein Sequence
- MSLIQVEILKYEEQDQFNEENGFIDYIPEEAICEEYEYIEVEDPENGKIEYISNILNPKIIGSKSDNETKDKTIFLKLNTDLYFQNKREKKFSCSSRKCKKDNISFDTQEELDQHNVFHLEQIVANECPICNKILANQMKLNIHMETRHVPKTFFCDNCGKTFRSKDNLRLHMSHHRKHFIVECKACHKSYKSMQSLRYHLRQHFEHHQCESCGKVFEHKKLLLGHIASKHNQELMLQCRFCSRMFSRNDVREAHERDIHKNGQIGSHFKCNECECAFDFRDELMSHKILNHYSGIIHTCEECGKNFKKNSLLELHMQSHKEKSIQCDVCEMMFTFVTGLAKHKKLGRCKGPAKAVNTLSKEEIAIIARNQLEEITVNHNRKVPEVDLFSDMTKEEPEKPKDPPKNKKKPGRKRKIVSIQGKNIEIESYRFVDGHQIEKMETKKPIVKVELQKNIGAVHIKSENSAETITSSSGRIIKRKLPLLFTYSPFKPINLTKKPNIPYECDKCGMTLDTKSRLLSHLNSHVRGQKYKCEKCEKSFCNMMSMKKHCAAIHREANPFKEKRFKCDKCPKRYLTEFLLGQHKLSHLNLKNQKCNQCSFATNTIYDLKNHIKRIHQSVKSFPCTELNCGKSFKRRCDMENHKKSVHTTIKVYVKCPVCDVIILEKGLQSHMSNRHSEKGQNRPFECSICGKTERYESNLIRHVEAVHMPTDRGVTYHCPQCPQTFFRRRELTSHSFEHYTGVVHVCEECGNRYKSKKELTNHLYSHRCKEWPCTICNTVFQTKSGRAKHIKKHVNDSYDIRDPSDSNYIIEQEEVFID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -