Cmar010061.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000002.1:358883-362455[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00014 0.01 16.5 0.7 2 23 223 244 222 244 0.97 2 22 0.021 1.5 9.6 1.2 1 23 252 275 252 275 0.95 3 22 0.00014 0.01 16.5 1.1 2 21 282 301 281 302 0.93 4 22 0.0035 0.26 12.1 0.1 2 23 307 328 306 328 0.95 5 22 2.1 1.6e+02 3.3 4.7 1 12 334 345 334 348 0.88 6 22 0.0015 0.11 13.2 3.7 1 23 365 388 365 388 0.95 7 22 0.057 4.2 8.3 1.2 1 19 393 411 393 414 0.85 8 22 0.015 1.1 10.1 0.1 3 23 427 448 425 448 0.92 9 22 0.00019 0.014 16.1 2.1 1 23 583 605 583 605 0.99 10 22 0.017 1.2 9.9 2.7 1 23 613 636 613 636 0.95 11 22 0.086 6.4 7.7 1.5 2 23 642 663 641 663 0.78 12 22 1.2e-06 8.7e-05 23.0 0.3 1 23 669 691 669 691 0.98 13 22 0.12 8.9 7.2 1.6 1 23 699 722 699 722 0.96 14 22 0.00025 0.019 15.7 1.0 2 23 729 751 728 751 0.92 15 22 0.04 2.9 8.7 0.1 2 23 754 775 753 775 0.94 16 22 0.0046 0.34 11.7 0.5 1 23 781 802 781 802 0.97 17 22 0.13 9.5 7.1 8.6 1 23 812 835 812 835 0.96 18 22 0.00061 0.045 14.4 4.2 1 20 840 859 840 860 0.95 19 22 0.1 7.7 7.4 0.0 3 23 872 893 870 893 0.93 20 22 0.00018 0.013 16.1 1.4 3 23 908 928 907 928 0.98 21 22 0.0042 0.31 11.8 1.2 1 23 933 958 933 958 0.96 22 22 0.057 4.3 8.2 0.3 2 23 964 988 964 988 0.95
Sequence Information
- Coding Sequence
- ATGGAACAGGATCAGAATTCATGTGTTCAAAATtgtaaaattaatgataaacaGATggtttttgaaaagtttagtaacaaaaaagtaagaaatacCAACGACAAACTGTCAATGCCTTTCCAGGAGATTTTAATCAAAACCGAAGACGAATTAAATATACCAACAGAGACAAACTTGGTTTCTCCATTCTAtgactttaaagaaaaaatttctgaaacaGAATATGAAAGTTCAATCGATGTGACATTGTTATTCACGGagaatttcatcaaaacaGAAGATGAATTAAATGTACCAACAGAGACAAACTTAGTTTCTCCATTCTATGActcgaaaaaagaaatttctgaacAAAATTATGAAGGTTCAATCGATGTGACATTGTTATTCGAGGAGAATTTTATCAAAACCGAAGATGAATTAAATCTACCAGCAGAGACAGAGTTGAATTCACCAATTTATgaagttaaagaagaaatttctgagGAGGTACAAGAAAATCGAAACGATGCTACTGAAAGTCAGAATGTGGagtcaaatgattttttaggGAAGGCTCAGTCAAATCCAACATTTATTCCTTCTAATGTTGTTAGTGGTAAAGTGTTAAAAAGTGGTCGCAAACGTCAGCAAGATCAGAATAGGAGATACAAATCTAGAATTGTTTATTGTGACATTTGTGGAAAAACTTGCAGAGATTTATACACTATTGCATTGCATATGAACACACATAAGAAATAtagaacaaaagattttcattgcgAAATTTGTGAAGGTTCTTACTTTGATGAACATGGGCTTCAAAAACATATACtaaatgttcatgaaaaatCAAAGCTTCTTACTTGTTCATTATGCAGAAGAACTTTTAGGACGAAAGAGAGCTTGAAAACCCATATTTCACGTCTCTGTCGTGTACCTTGTGAGGTCTGTGGAAAAATGATTCGGAAGAATTCACTCAAAGCACATCTAAAAAgagttcatttaaaaagtaGAACATATCGGtgtgatatttgtggaaagAAATGCTGCAGCACACATCTTTCTCATCTCGTGACTACTCATATCGGTTTAGAACACAGAACAAAAGATCATCAATGCGATATTtgtaataaagttttcttcgaTAAGGATGGAATAAAAATGCATATGACACAATGTCATGGAAATACGAAATTTCCATGCGATTTGtgtggaaaaacttttaaatgtgcGCCATTCTTGAAACAGCATAGTATTAGATGTTCAATGGAGgcaaataattcatcaaaaattgacTGTGATACGTGTGGGAAAGTTTGTATAGGCCCAAATTCATATCTTAATCACATGATTGATATTCATAAAATCACTCCAGACAAAGAACAACTTCTAAAAAAAGATGCTTGTGATtgcaaaataaatgagaaacagaagatttttgaaaagtttagtaaaaaaaaaattagaaatatcAAGGATGAAGTGCCATTCCAAGAGAATAATATCAAAACTgaagatgaattaaatataTCATCAGAGACGGAGTTGACTTTACCAAtttatgaagttaaaaatgaaatttctgaacCAGAACATGAAAGTCCAAACGATCTTAATGAAGGTCGCAAAATTGAGACAAATAAACGTCGAAAACAAGATCAGTCAAATCCTCAATTTGTCTCTTGCATTGTGTGTGAAAAAGTATTGAAAAATACTCGTATACTTTCAATTCACTATAAGAGAATGCATTCCGATTCAAAAGTCTTTCAATGTGACATTTGTGGAAAAACTTGTGGAAGTATGCATAATATTGCTTTGCATATGAACACGCATAAGAAATAtagaacaaaagattttcaatgccatatttgtgaaaattattacttCGACAAACAATACCTTCGACAGCATATATCGAACGCTCATAATCCTAAATTAGTTCCTTGTGATACttgtggaaaattattaaagaaaaaatcactCAAGGAGCATCACAGGATTATgcattcaataattaatttatttcgttgCGATATATGTGGAAAAACGTTCAAAACCCGAGCCAACATTGATGCTCACATGGTCacgcataaaattttaagagtAAGAGACTTTCattgtaaaatttgtttagGTTCATACTTCGATGAGAATGGACTTCGAAGTCATATgttaaaaaatcatgaaagacCAAAGCACCTTACCTGTTCATTATGTAGAAAAACTTTTAGGACAGAGGAAGGCttaaaaaagcataaattacTTCCTCACCGTGTACCTTGCAAGGTCTGTGGAAAAATGCTTCTAAAGTATGCACTCAAAGAACACCTTAGAGCAGTgcatttcaaaattaaaccGTATCAGtgtgatatttgtggaaagAAACTATATAAAACATCTCTTGCTAGTCACGTGACTTCACATATAGGTTTGGAACACAGAACAAAAGATCATAAATGCGACCTttgtaataaagtttttttcgaCAAGATTAGAATAAAAAAGCATATGAAACATTGTcacagaaattcaaaatttccaTGTGATTTGTGCAAAAGAACTTACACAAGTAAATCTTACTTGAAGAAGCATAGATGTCcaatgaaagtaaataaatggTCAAAAATTGACTGTGATACGTGTGGTGAAGTTTTTCAAGGCCCAAATGTATACTTCAATCATATGATTAATATTCACAAAATCACTCCAGACAAAGAACAACTTCTTAACACAGTTGCTTGTGATGTTTGTGAAAAACGTTTCTTTACTAAACGATCCTTACTAAATCATCAAAGTACACATGTAAAGAGAATTTTCACTTGTGACTATCCTGAATGTCAGAagaaattcttagaaaataaGAATCTTAGAAGACATACTTTAACCATTCATAAAAGTATTCGTGAAAAATGTCCAGTTGGAAATGGATGCAAATACTCAGGAGCAAGAAAAGATTACATGACAACCCATTTGAAGAATCACAAAGAACTTTCCCCTGGAGAGCTACAAAATTATCTCAAATTATTACGAACCATCAATCTTTTCTAG
- Protein Sequence
- MEQDQNSCVQNCKINDKQMVFEKFSNKKVRNTNDKLSMPFQEILIKTEDELNIPTETNLVSPFYDFKEKISETEYESSIDVTLLFTENFIKTEDELNVPTETNLVSPFYDSKKEISEQNYEGSIDVTLLFEENFIKTEDELNLPAETELNSPIYEVKEEISEEVQENRNDATESQNVESNDFLGKAQSNPTFIPSNVVSGKVLKSGRKRQQDQNRRYKSRIVYCDICGKTCRDLYTIALHMNTHKKYRTKDFHCEICEGSYFDEHGLQKHILNVHEKSKLLTCSLCRRTFRTKESLKTHISRLCRVPCEVCGKMIRKNSLKAHLKRVHLKSRTYRCDICGKKCCSTHLSHLVTTHIGLEHRTKDHQCDICNKVFFDKDGIKMHMTQCHGNTKFPCDLCGKTFKCAPFLKQHSIRCSMEANNSSKIDCDTCGKVCIGPNSYLNHMIDIHKITPDKEQLLKKDACDCKINEKQKIFEKFSKKKIRNIKDEVPFQENNIKTEDELNISSETELTLPIYEVKNEISEPEHESPNDLNEGRKIETNKRRKQDQSNPQFVSCIVCEKVLKNTRILSIHYKRMHSDSKVFQCDICGKTCGSMHNIALHMNTHKKYRTKDFQCHICENYYFDKQYLRQHISNAHNPKLVPCDTCGKLLKKKSLKEHHRIMHSIINLFRCDICGKTFKTRANIDAHMVTHKILRVRDFHCKICLGSYFDENGLRSHMLKNHERPKHLTCSLCRKTFRTEEGLKKHKLLPHRVPCKVCGKMLLKYALKEHLRAVHFKIKPYQCDICGKKLYKTSLASHVTSHIGLEHRTKDHKCDLCNKVFFDKIRIKKHMKHCHRNSKFPCDLCKRTYTSKSYLKKHRCPMKVNKWSKIDCDTCGEVFQGPNVYFNHMINIHKITPDKEQLLNTVACDVCEKRFFTKRSLLNHQSTHVKRIFTCDYPECQKKFLENKNLRRHTLTIHKSIREKCPVGNGCKYSGARKDYMTTHLKNHKELSPGELQNYLKLLRTINLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -