Cmar018466.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000043.1:410536-413049[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.8 3.6e+02 2.2 0.5 7 20 186 199 186 200 0.93 2 22 0.097 7.2 7.5 2.4 1 23 198 220 198 220 0.97 3 22 0.002 0.15 12.8 1.2 1 23 228 251 228 251 0.97 4 22 2.1 1.5e+02 3.3 0.1 2 23 283 304 282 304 0.83 5 22 1.2e-05 0.00089 19.8 0.8 1 23 310 332 310 332 0.99 6 22 0.084 6.2 7.7 0.3 1 23 340 363 340 363 0.96 7 22 0.0059 0.44 11.3 3.8 2 21 370 389 369 390 0.92 8 22 0.0069 0.51 11.1 0.4 2 23 395 416 394 416 0.95 9 22 6.9e-06 0.00051 20.6 1.5 1 23 422 444 422 444 0.99 10 22 0.11 8.5 7.3 1.5 1 23 452 475 452 475 0.93 11 22 0.0016 0.12 13.1 0.4 2 23 482 504 481 504 0.93 12 22 0.0023 0.17 12.6 0.4 2 23 511 532 510 532 0.96 13 22 1.8e-06 0.00014 22.4 3.5 1 23 538 560 538 560 0.99 14 22 0.12 9.1 7.2 1.5 1 23 570 593 570 593 0.93 15 22 0.00017 0.013 16.2 1.0 2 23 600 622 599 622 0.95 16 22 0.4 30 5.6 0.2 3 23 628 646 627 646 0.77 17 22 9.9e-05 0.0074 16.9 0.5 1 23 652 674 652 674 0.98 18 22 0.011 0.79 10.5 3.9 1 23 682 705 682 705 0.96 19 22 9.4e-05 0.007 17.0 2.5 2 23 710 732 709 733 0.92 20 22 4.5e-06 0.00034 21.2 2.2 1 23 734 756 734 756 0.98 21 22 1.1e-06 7.9e-05 23.1 3.2 1 23 761 786 761 786 0.97 22 22 0.0016 0.12 13.1 0.2 3 23 793 816 792 816 0.93
Sequence Information
- Coding Sequence
- ATGCGTGCTAAAAGGATTGTCATGAAAAAACAAGATTTGAAGGCCGTAGTGGTTCTGGAGGACATCTTTTCTGACTTTATAAACTGTCACGAGAAATGTCGTTTGTGTTTCAAAGACGTTACCGAGCGAGATTCAAGAATACAAATCACAGATGACATAGAGAAAAAGATTAATTCTGTCTTGCAAGTTCACTTTTCATTGGATGGAACAGGATCAGATTTTATGTGTTCAaaatgtgaaaacattttaaatgattctcATCAGTCCAAgttcaaaataaatgataaattgaagtGTTATGAGAAGTTTagtaataaaaaagttgacaATGTCCGCATTGAACTATCAGTTCCAATACActacaatttcattaaagttgaagatgaattgAATATATCAACGGAGATGGAGTTGGTTTCACCAATGAATGAAGTCAAAGAAGAAAGTTCTGAAGATGAAAGTCTAAAGGATCATGATGAAGTTAAGAATGAAGAGGaaaatgaacttgaaaatcaGGATCAGTCAAATcctcaattaattttatgcgATGCtggtggaaaagtttttaaaaatgatcaCTCGGTCAAGCGACATCAGTGCGACATTTGTGGATTAACAGCGACATGtaaattcaacatttcttctcACATGAACACGCATAAAGAATTTAGGACAAAGGATTTTCAGTGTCAAATTTGTGGGAACTCttactttaataaaaatgtgcTTCGATatcatattttgaaaaatcatgaaaaaccAAAGCACCTTACCTGTTCACTATATAGTAGAACATTTACGACCGAAGAAGGTATTGAAAGTCATAAGTTACGTCCCTGTCATTTACCTTGTGAGGTCTgtggaaaaatgattttaaacaaAGAACTCAAGCCACATTTAAATACGGTGCACTTCAATATAAAACCATATCAGTGCGATATTTGTGGTaggaaattcaataaaaagacGCCTCTTGCTTATCACTTGAATACGCACATAGATTTcagaacaaaagattttgattgTCAAATTTGTGAAAGTTCCTATTTGAGTAAAGCGGCACTTCGAAGCcatatattaaaaaatcatgaaagacCAAAACATCTTACCTGTTCATTGTGTAGAAGATGTTTTAAGACcgaaaaaagcttaaaaaatcataagttACGTCCCTGTCGCTTACCTTGTGAGGTGTgtggaaaaattcttttaaaggaaaatctcAAACATCATATAAATAGGGTTCATTACAATATAAAACCATATCAGTGCGATATTTGTGGTTTGAAAACCAGTAGAAAAACACATCTTGCCAATCACGTGAATACGCACAATGATTTTagaacaaaaaagtttcattgtcAAATTTGTGAAAGTTCCTTCTTTGATAAAGGGTCACTTCAATTTCATATATTGAATGTGCATGAAAAACCAAAGCATCTTACCTGTTCATTATGTAGAAGGACTTTTGCTACCGAAGAAggtttaaaaaatcataagttACAACCTCATCGTTTAAATCATAAGGTAAGTTGTAAGCTCTGTGGAAAAATGATTTCCAAGGTAAATCTACAAATACATTTAAGAAGAATGCATTCGAGTATTAGACGATATCAATGCGAtatttgtgaaaagaaattctgtaCTAAAGCAGATCTTGCTCATCACATGATTAGACATATTAATTTGAAACATAGAACAAGAGATTATCATTGTCAAATTTGTGAAAGTTCCTTCTTTGATAAAGGAACACTTCAATTTCATATATTAAATGTGCATGAAAAACCAAAACATCTTACCTGTTCATTAtgtagaaaaagttttcggaCCGAAGAAGGcttaaaaaatcataagttACGTCCTCACAAGGTAAACGAACCTTGTGAGATTTGTGGGAAATCAATTAGAAATCTGAAGATGCATTTGAATATCATGCATTTCAGTACTATACGATATCAAtgtgatatttgtggaaagAAAATCAGTAGTAAAACATATCTCGCTTACCACGTGAACAATCACAAAGATTTTAGAACAAAAGATTTCCATTGTCAAATTTGTAGAAGTTCCTACTTTGATAAAAAAACACTTAAAAGTCATATACgaaatgttcatgaaaaaaaGCTTACCTGTTTATTatgtggaaaaacttttaaaaagaaagagtctttaaaaaatcataagttACTTCCTCATCATTTTCGttgtgatatttgtggaaaaCGTTTCCCTACTAAACACTTAATTCTACGTCATCAAAATATGCATCAAGAGAGAAATTTTACTTGTGATGTTCATGgatgtcaaaagaaattcaaaacaaaatctaatcttaaaaaacacattttaaccgttcataaaaaaattggtGAACCATGTCCTGTTGGAAATGGATGCAAATACTCAGTAAGAAGAAGAGATTCCATGAAAAGACATTTGAAGGTACACAAAGAACTTTCTCGTGAAGAACTGGAAAATTATTGGAACAAGATTCGGacaatgaattttgtttga
- Protein Sequence
- MRAKRIVMKKQDLKAVVVLEDIFSDFINCHEKCRLCFKDVTERDSRIQITDDIEKKINSVLQVHFSLDGTGSDFMCSKCENILNDSHQSKFKINDKLKCYEKFSNKKVDNVRIELSVPIHYNFIKVEDELNISTEMELVSPMNEVKEESSEDESLKDHDEVKNEEENELENQDQSNPQLILCDAGGKVFKNDHSVKRHQCDICGLTATCKFNISSHMNTHKEFRTKDFQCQICGNSYFNKNVLRYHILKNHEKPKHLTCSLYSRTFTTEEGIESHKLRPCHLPCEVCGKMILNKELKPHLNTVHFNIKPYQCDICGRKFNKKTPLAYHLNTHIDFRTKDFDCQICESSYLSKAALRSHILKNHERPKHLTCSLCRRCFKTEKSLKNHKLRPCRLPCEVCGKILLKENLKHHINRVHYNIKPYQCDICGLKTSRKTHLANHVNTHNDFRTKKFHCQICESSFFDKGSLQFHILNVHEKPKHLTCSLCRRTFATEEGLKNHKLQPHRLNHKVSCKLCGKMISKVNLQIHLRRMHSSIRRYQCDICEKKFCTKADLAHHMIRHINLKHRTRDYHCQICESSFFDKGTLQFHILNVHEKPKHLTCSLCRKSFRTEEGLKNHKLRPHKVNEPCEICGKSIRNLKMHLNIMHFSTIRYQCDICGKKISSKTYLAYHVNNHKDFRTKDFHCQICRSSYFDKKTLKSHIRNVHEKKLTCLLCGKTFKKKESLKNHKLLPHHFRCDICGKRFPTKHLILRHQNMHQERNFTCDVHGCQKKFKTKSNLKKHILTVHKKIGEPCPVGNGCKYSVRRRDSMKRHLKVHKELSREELENYWNKIRTMNFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -