Cmar001345.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- ZEB1
- Assembly
- GCA_900005825.1
- Location
- CVRI01000047.1:4534451-4542540[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0036 0.27 12.0 2.1 1 23 181 204 181 204 0.98 2 19 0.0012 0.089 13.5 3.5 1 23 210 232 210 232 0.97 3 19 0.32 24 5.9 2.8 1 23 237 260 237 260 0.92 4 19 2.1e-05 0.0016 19.0 1.8 1 23 266 288 266 288 0.96 5 19 0.0036 0.27 12.0 0.2 2 23 295 316 294 316 0.97 6 19 0.00032 0.023 15.4 1.3 1 23 322 345 322 345 0.97 7 19 0.01 0.75 10.6 0.4 1 23 444 467 444 467 0.91 8 19 4.2e-06 0.00031 21.3 2.2 1 23 473 495 473 495 0.98 9 19 2.9 2.2e+02 2.9 3.2 1 23 500 523 500 523 0.91 10 19 4.2e-05 0.0031 18.1 1.7 1 23 529 551 529 551 0.96 11 19 0.0005 0.037 14.7 1.1 1 23 751 773 751 773 0.98 12 19 0.0085 0.64 10.8 0.9 3 23 780 800 779 800 0.94 13 19 9.1e-05 0.0068 17.0 4.3 1 23 969 991 969 991 0.97 14 19 5.5e-06 0.00041 20.9 0.8 3 23 999 1019 997 1019 0.97 15 19 2e-06 0.00015 22.3 0.4 2 23 1025 1047 1024 1047 0.94 16 19 3.6e-05 0.0027 18.3 2.6 1 23 1053 1075 1053 1075 0.98 17 19 0.001 0.077 13.7 0.2 2 23 1084 1105 1083 1105 0.97 18 19 0.0012 0.091 13.5 1.7 1 23 1111 1134 1111 1134 0.96 19 19 0.011 0.79 10.5 0.8 2 23 1145 1167 1145 1167 0.95
Sequence Information
- Coding Sequence
- ATGGCTTCAATGATCTCTTCATGCGTTTGTGAATACATGGGGCCGTTTAAGAATGAACTCACCGTAGTTACGGGATACtctgaaaaacaaatttctcaaattttaGaaaattttcttcaagagAAACTCCCAGAATCTGTTATTGAAAATTCCGGAATATgtcaaaattgtttcataaaattcaacGAGTATGATGAACATCAAACCATGGCTCAACAGATTCAGAAAGAACTTCTTGGGATGTATTTTCAAACACCAACTGCTTACACAACTTACAATATTAAGGAAGtgaagattgaaaaagaagaaatactTTAcgaagaaatagaaaatgttaGTGGCACTAtcgttgaagaaattgaagttgacTTCCCCGAATATAGTAAAAAGTATGTGCCCAAAAAGAAAACCCCTAaggttgaaaataaaacaaataaatcatcatcagTTCTGGTGCAACCAAGAAAAACAAGCTactcaagaaaagaaaaagataaagaTGAGGGATTAATAGTAATTATGGTGAACGGTATGAAGCGTTATCAATGCGAATTTTGTGGCaagaaagaattcaattcaCGATCAAGATTAAAAACGCACAGATTAATTCACACATCtgagagaaattttatgtGTCAAACATGCGGTGCAAGTTTTAAAACActaaattgtttgaaaaatcattcgaGACTACATAACaatatcttttattattgtgaCCTGTGCCCATCTCGATTCAAAGGAAAACATGAACTTCGTTGTCATATGGATGCAATTCATTTAGGGAGAAAGGATCATATATGTCAaATTTGTGGGAAAGCTTTTTCAAGAGATAAAACGCTTCGACAGCACTTGATGTATCATCTCAATGAACGAAATATTGTTTGTGAAGTTTGTGGCTTCAAAACTGTGAACAGACCAAAGATGGCAAGACATATGAAATCACATACtggagaaagaaattatgagTGCTCAATTTGtgggaaaagatttttatacaGCTATAATGTCACTGCGCATATAAAACACGTCCATTATCATGAGAAACGACCAACaacaaacgaagaaaaattaactTGTACAGTCTGTGGAAAGattcagaaaaaaattcatacgATGTATTTTCAAGCACAAAAAGCTTGCACAGATTACAGTTTTGAGGATGGAACAAGCATTGAAACTgaggagaaagaaaatattggtGACGCTATCgttgaaattgaagttgaattacctgaaaagattaaaaactaTAAACCAAGCTACTcgcgaaaagaaaaagataaagaTAAGGGATTGATAGTAATTATGGTGGACGGCATGAAGCGTTACCAATGTGAGATTTGTGGCAAGAATATATTCAAAGCACGAAAAAATTTAGCAAGGCACAAATTAATTCACACATCTGAAcgcaattttatttgtaaattatgTGGAGCAagttttaaaacatcaaaaaatttaagaagCCATACGAAACgtcatgaaaatatcttttattacTGTAACCTGTGCCCATTTCGATCCAAAGGAAAACATGAACTTCGTTGTCATATGgATGCAATTCATTTAATGAGAAAGGATCATATATGTCAAatttgtggaaaagctttttcaagaGATAACACACTTCGACAGCACGTGAAGTATCATAAAAATGAACGAAATATTGTTTGTGATGTTTGTGGCTTCAAAACTGCATACAGtcttgaaaattgttttatttgctGCGGATTTATGGGATcctttaaaaatgaattaaccGAGTCAACAGGATTTTCTGAGAAAACCATATACCAGTTAATAGaaaatttcacGAACATAAATTTATCTCAAGAGATCATTGATGAAGCTGGAATTTGTCagaattgtttaataaaattcaatgagtACGATGAACACAGGTCTGTTGCAGAACAAATTCAAGCTGAGCTGTCTTCACTGTTCCAAAATACTTGTGAAGCTTATGGTAATAatataaaacaagaaaaacagGATACGTGGGAAGATCAATTCCATGCACAAGAAGAGATCAATAATTCTATTGACACTTATGAAGCttctcaaatttcaaatgaatataTTGCTGAAATGTGTATGGAATCAGCAGAAGAAGGAAGTTAtccaaaaaatgaaaaaatcatGACTACTCTAGGGGACAATGAATCTAAGCTTGTTCCcttcttgaaagaaaagagctcaacatttgaaaaaatcaataaaaaagttcatcaaTTAGAAAAAAGGGATTATATTTGTCAAATCtgtgaaaaagctttcttaGAATCTAAAACACTCCGACGGCATATGAAGTATCATCTTATTGAACGAAATATTTGCGAACTTTGTGGTTTTAAAACTTTCGAAAGAGCAAACATGACAAGACACATGAAATCACATACCCGAGAAAGAAATCATGAgATAGGTACCTACATGAAATCGTTAAAgctaatgaagaaaatgtcattaaaacaaaaaaatttcacGAACATAAATTTATCTCAAGAGATCATTGATGAAGCTGGAATTTGTCagaattgtttaataaaattcaatgagtACGATGAACACAGGTCTGTTGCAGAACAAATTCAAGCTGAGCTGTCTTCACTGTTCCAAAATACTTGTGAAGCTTATGGTAATAatataaaacaagaaaaacagGATACGTGGGAAGATCAATTCCATGCACAAGAAGAGATCAATAATTCTATTGACACTTATGAAGCttctcaaatttcaaatgaatgcaTTGCTGAAATGTATATGGAATCAGCAGAAGAAGGAAGTTATCCAAAAAATGAATATATTATAAGTACACTATGGGATGATGATTCCAAACGTGTTCCcttcttgaaagaaaagagCTCAACATTTGAAGAGactgaaagcaaaaaaaaaaatcatcaatgtgaaatttgtttcaaaacatttaaagagaaaagcaaaCTAAGGACACACCGTTTAATTCATACTACAGTTCGTAATGTTATTTGTCCGATTTGTAGCAAAGCCTTCAAAACGCAAGCTTGTCTACGTGCTCACAAACGAGTTCACAATCCAACTTATGTTTATTGCGATTATTGTGGTAAAAGTTACACTCAAAAGCCTGAATTATCTCGTCACATGAAATTCGCACATTTTAATATTCGTGATTTTTCATGCGAGTTTTGTTCAGCAACATTCGCTACAAAAAGTCATCTAACAGCACATAGATCAACACACACTGGACTCGACTACAAAACTATTGTTTGTGAAGTTTGCGATATCACTTTCCTTACAAAAGCAAAACTTGATCGACATATGAAAAGTCACACAGGCGAAAGAAACTTTGAGTGTTCgatttgtgataaaaaattcttatacAGCTATAATGTTACTGCACATATAAAGCATGTGCACTATcgagagaaaaggaaaagtgtCAACCGAGAATGCTCAATTTGTTCAAAgaaattctttaaagtgTGGAAGCTTCGTGAACATCTGAGAGATGAGCATAACGTTATGGAAACTGACAATGTAATttga
- Protein Sequence
- MASMISSCVCEYMGPFKNELTVVTGYSEKQISQILENFLQEKLPESVIENSGICQNCFIKFNEYDEHQTMAQQIQKELLGMYFQTPTAYTTYNIKEVKIEKEEILYEEIENVSGTIVEEIEVDFPEYSKKYVPKKKTPKVENKTNKSSSVLVQPRKTSYSRKEKDKDEGLIVIMVNGMKRYQCEFCGKKEFNSRSRLKTHRLIHTSERNFMCQTCGASFKTLNCLKNHSRLHNNIFYYCDLCPSRFKGKHELRCHMDAIHLGRKDHICQICGKAFSRDKTLRQHLMYHLNERNIVCEVCGFKTVNRPKMARHMKSHTGERNYECSICGKRFLYSYNVTAHIKHVHYHEKRPTTNEEKLTCTVCGKIQKKIHTMYFQAQKACTDYSFEDGTSIETEEKENIGDAIVEIEVELPEKIKNYKPSYSRKEKDKDKGLIVIMVDGMKRYQCEICGKNIFKARKNLARHKLIHTSERNFICKLCGASFKTSKNLRSHTKRHENIFYYCNLCPFRSKGKHELRCHMDAIHLMRKDHICQICGKAFSRDNTLRQHVKYHKNERNIVCDVCGFKTAYSLENCFICCGFMGSFKNELTESTGFSEKTIYQLIENFTNINLSQEIIDEAGICQNCLIKFNEYDEHRSVAEQIQAELSSLFQNTCEAYGNNIKQEKQDTWEDQFHAQEEINNSIDTYEASQISNEYIAEMCMESAEEGSYPKNEKIMTTLGDNESKLVPFLKEKSSTFEKINKKVHQLEKRDYICQICEKAFLESKTLRRHMKYHLIERNICELCGFKTFERANMTRHMKSHTRERNHEIGTYMKSLKLMKKMSLKQKNFTNINLSQEIIDEAGICQNCLIKFNEYDEHRSVAEQIQAELSSLFQNTCEAYGNNIKQEKQDTWEDQFHAQEEINNSIDTYEASQISNECIAEMYMESAEEGSYPKNEYIISTLWDDDSKRVPFLKEKSSTFEETESKKKNHQCEICFKTFKEKSKLRTHRLIHTTVRNVICPICSKAFKTQACLRAHKRVHNPTYVYCDYCGKSYTQKPELSRHMKFAHFNIRDFSCEFCSATFATKSHLTAHRSTHTGLDYKTIVCEVCDITFLTKAKLDRHMKSHTGERNFECSICDKKFLYSYNVTAHIKHVHYREKRKSVNRECSICSKKFFKVWKLREHLRDEHNVMETDNVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -