Cmar018584.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Clunio marinus
Gene Symbol
Zbtb41
Assembly
GCA_900005825.1
Location
CVRI01000043.1:421625-423802[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 3.1e-06 0.00023 21.7 0.3 1 23 207 229 207 229 0.99
2 18 0.0095 0.7 10.7 2.0 1 23 237 260 237 260 0.92
3 18 0.0073 0.55 11.1 0.9 2 21 267 286 266 287 0.91
4 18 0.056 4.2 8.3 0.0 2 23 292 313 291 313 0.93
5 18 1.5e-06 0.00011 22.6 2.5 1 23 319 341 319 341 0.99
6 18 0.0014 0.11 13.3 4.0 1 23 351 374 351 374 0.95
7 18 0.00025 0.019 15.7 0.9 2 23 381 403 380 403 0.95
8 18 0.0035 0.26 12.1 0.1 2 23 406 427 405 427 0.96
9 18 8.4e-08 6.3e-06 26.6 3.6 1 23 433 455 433 455 0.99
10 18 0.0084 0.62 10.9 2.4 1 23 463 486 463 486 0.95
11 18 0.0041 0.31 11.8 0.7 2 23 493 515 492 515 0.92
12 18 0.14 10 7.1 0.1 2 23 518 539 517 539 0.92
13 18 1.4e-05 0.001 19.6 1.2 1 23 545 567 545 567 0.99
14 18 0.01 0.77 10.6 3.4 1 23 577 600 577 600 0.93
15 18 0.00032 0.024 15.3 0.3 2 23 607 629 606 629 0.94
16 18 0.27 20 6.1 1.6 3 23 635 653 634 653 0.85
17 18 1.3e-06 9.6e-05 22.9 2.7 2 23 660 680 659 680 0.96
18 18 2.6e-06 0.0002 21.9 1.8 1 23 690 713 690 713 0.97

Sequence Information

Coding Sequence
atgcgTGCCAAAGAGAATATCTTGAAAAAACAAGATTTGAATGCCGTAGTCGTTCTGGAGGACATCTTTTCTGACTTCAGAAACTGTCACGAGAAATGTCGTTTGTGTTTTAAAGAAGTTACCGAACAAGATTCAAGAATACAAATCACGGATGACATAGAGAAAAAGATTAATTCAGTCTTGCAAGTTCACTTGTCATTGGATGGAATGGGATCAGAATTTATATGTTCAAAatgtgaaaacaatttaaatatttcccatcagtttacattcaaaataaatgagaaattaaagtGTTATGGGAAGTTTAGTAGCAAAAAAGTTGACGATGCCGATGATGGACTACCAGTCCCATTTCAGgagaatttcattaaagttgaagatgaattgaaattatcaaCAGAGATGGAGTTGACTTCACCAATAAATGAAGTCAAAGAAGAAAGTTCTGGAAATGGAAGTGCAACCGAACCTGATGAAAGTCAGAATAAAGAAGCAAATGAACCTGAAAAGCAGGATCTGTCAAATCCTCAGTTCATTTTAAGCGATAGtgatggaaaaatattaaaaaatggtTACACGACCAAACCACGTCGTATAAGATATTTCAATACTAAATTTCAGtgcgatatttgtggaaaaGTAATGAAAACCAAAGCTAACATTGCTCGTCACATGAATACGCATAAAGATCTTAGAACAAGATATTATCATTGTCAAATTTGCGAAAGTTCCTTCTTTGATAAACATGGACTTAAAACCCATGTGATTGGTGTTCATGAAAAACCAAAACATCTTAACTGTTCATTATGTAGAAGAACTTTTAGGACTGAAAGAGGCTTAAAAAGTCATAAGTTACGTCCTTGTCGTTTACCTTGTGAGATCTGTGGGAAATCGATTGGAAAAAATGGACTCAAGGAACATCTGAATGTGATGCATTTTAAGATTAAACCATATGAATGCGATATTTGTGGGAAGAAATTCAGAAGTAAAACTGAAATTACTCATCATTTGAATACACATATTAGTCTAGAACACAGAACAAGAGATTACCAATGCGATCATTGTGAAGCATCTTTTTTCGATAAATGTGGACTTCAAAGACATACATTAAATATGCATGAAAAACCAGAGCATCTTACCTGTTCATTATGTAGCAGAACTTTTAAAACCGAGGAAGGcttaaaaaatcataagttACGTCCTCATCGTTTGCCTTGTGAAGTCTGCGGGAAATCGATTGGAAAAAACGAACTCAGGCGACATTTAAATACGGTACATTTCAATATAAAACCATATCAGTGCAATATTTGTGGTAAGAAATTCGGTAAAAAATCACACCTTACTAGACACGTGAATACGCACAAAGATTTTAGAACAAAAGATTTCCATTGTCAAATTTGTGAAAGTTCCTACTTTAATAAAGAAACACTTCAAACGCATATATTAAATAATCATGAAAGACCAAAGCATCTTACCTGTACATTATGTAGAATAACTTTTAAGACTGAAAGAGGCTTAAAAAGTCATAAGTTACTTCCTCATCGTTTACCTTGTGAGATCTGTGGGAAATCGATGGGAAAAAATGCACTCAAGATGCATCTGAATGTGATGCATTTTAAGATGAAACCATATCAATGCGATATTTGTGATAACaaattcagaaataaaaatgaagttaCTAATCATTTAAATACACATATTAGTCTAGAACACAGAACAAGAGATTATCAATGCGATCTTTGTGAAGCTTCTTTCTTCGATAAATGTTCACTTCGAACTCATACATTCAATATgcatgaaaaacaaaagcacCTTATTTGTTCATTATGTAGCAAAGCTTTTAGAACCGAAGAAGGCCTAAAAAATCATAAGTTACGTCCTCACAAGGTAAACGAACCTTGTGAGATTTGTGGGAAATCAATTAGAAATCTTAAGCATCATCTGAATAAAATgcatttcaatattaaacGATGTCAGtgcgatatttgtggaaaGAAATTCCGTAAATCTAACCTTGCTCGTCACATAAGCACACATATTGGTTTGGGACCCAGAACGAAAGATTTCCATTGTCAAATATGTGGAAAATCCTTCTTCAGTAAACCTGGACTTAAAGCCCATACAAGAACtgttcatgaaaaaaattcccTACAGATTCATCAGAATATGCATTAA
Protein Sequence
MRAKENILKKQDLNAVVVLEDIFSDFRNCHEKCRLCFKEVTEQDSRIQITDDIEKKINSVLQVHLSLDGMGSEFICSKCENNLNISHQFTFKINEKLKCYGKFSSKKVDDADDGLPVPFQENFIKVEDELKLSTEMELTSPINEVKEESSGNGSATEPDESQNKEANEPEKQDLSNPQFILSDSDGKILKNGYTTKPRRIRYFNTKFQCDICGKVMKTKANIARHMNTHKDLRTRYYHCQICESSFFDKHGLKTHVIGVHEKPKHLNCSLCRRTFRTERGLKSHKLRPCRLPCEICGKSIGKNGLKEHLNVMHFKIKPYECDICGKKFRSKTEITHHLNTHISLEHRTRDYQCDHCEASFFDKCGLQRHTLNMHEKPEHLTCSLCSRTFKTEEGLKNHKLRPHRLPCEVCGKSIGKNELRRHLNTVHFNIKPYQCNICGKKFGKKSHLTRHVNTHKDFRTKDFHCQICESSYFNKETLQTHILNNHERPKHLTCTLCRITFKTERGLKSHKLLPHRLPCEICGKSMGKNALKMHLNVMHFKMKPYQCDICDNKFRNKNEVTNHLNTHISLEHRTRDYQCDLCEASFFDKCSLRTHTFNMHEKQKHLICSLCSKAFRTEEGLKNHKLRPHKVNEPCEICGKSIRNLKHHLNKMHFNIKRCQCDICGKKFRKSNLARHISTHIGLGPRTKDFHCQICGKSFFSKPGLKAHTRTVHEKNSLQIHQNMH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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