Cmar010066.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000002.1:349648-352256[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.6e-06 0.00042 20.8 0.1 3 23 211 231 210 231 0.98 2 19 2.6 2e+02 3.0 5.9 1 23 239 262 239 262 0.91 3 19 0.013 0.96 10.3 0.1 2 23 267 289 266 289 0.96 4 19 3.7e-06 0.00028 21.4 0.1 1 23 293 315 293 315 0.98 5 19 2.2e-06 0.00016 22.2 0.2 3 23 326 347 324 347 0.95 6 19 0.0016 0.12 13.1 0.1 2 23 353 374 352 374 0.92 7 19 0.006 0.45 11.3 1.7 1 23 380 401 380 401 0.95 8 19 0.0013 0.094 13.5 1.4 1 23 409 432 409 432 0.94 9 19 0.00017 0.012 16.2 1.0 2 23 439 461 438 461 0.95 10 19 0.0012 0.091 13.5 0.2 1 23 463 485 463 485 0.91 11 19 0.00029 0.022 15.5 1.7 1 23 491 512 491 512 0.99 12 19 0.00017 0.013 16.2 1.4 1 23 520 543 520 543 0.95 13 19 0.38 28 5.7 0.3 2 23 550 572 549 572 0.91 14 19 0.001 0.078 13.7 0.2 1 23 574 596 574 596 0.95 15 19 0.0068 0.5 11.2 6.6 1 23 602 623 602 623 0.99 16 19 0.0025 0.19 12.5 0.9 1 23 633 656 633 656 0.95 17 19 0.0012 0.087 13.6 0.1 3 23 670 691 668 691 0.94 18 19 0.0015 0.11 13.2 1.0 3 23 706 726 705 726 0.94 19 19 0.0021 0.15 12.8 1.1 1 23 731 756 731 756 0.93
Sequence Information
- Coding Sequence
- ATGCGCATTATAAGGAGTGTCTTGGAAGCACAAGATTTGAATGTCAAGGTCGTCCTGGAGGACATATTTGCGGACTTCAAAAACTGTCACGAGAAATGTCGCTTGTGTTTCGTACCAGTTACCAAACGATACTCGAGAATAAAAATCACAGATGAAATACAAAACAAGATTAATTCTGTCTTGCAAGTTCACTTATCAATAGATAGAACAGGATCAGAATTTATATGTTCTGAATGTGggaacaatttaaataatgtcCATCTGTTTAAGtgcaaaataaaagagaaacagaattattttgaaaagtttagtAACAAAAAAGTTGGCGATACTGATGACGATCTACCATTGCCATTCCAAGAGCATGACATCAAAACTGAGTATGAATTAAATATATCAACAGAGACGGAGTTGACTACACCAATTTATGAAGTTAAGGATGAAATTTTTGATCCAGAACATGAAAGTCCAAACGATGTTAATGAAAGTCGGAATGTGGAGTCAAGTGAATTTTTAAAGCAGAAGCAGTCAAATCCACAGTTTGTTCGCCGTGATGTtactataaaaatattaagaacaGATCGTCCACTTCAGCAGCATAAATATAGAAAAGATTCCAAAGCTCGtttttgtgatatttgtggaaaagcatttaaaaacCGAGCCTACATTGCTGCTCATATGAACACGCATAAGAAATATAGAACAAAAGATTATCATTGCCatatttgtgaaaataaacACTTCGATAAAAAACAACTTAAAATTCATACAATAAATGCTCATGGTAAATCTGTTTCTTGCGATATTTGTGGAGAAGCATTAAAAAATGGTCTCGCACTAAAGCGGCATAAATTAACAATACATTCCAAAAAATTTCCATGTGAAATATGTGGAAAAGGTTCAAGAGATTCATACAGTCTTGCTTTGCATATGAACACgcacaagaaaaataaacctTGTATAAATGTTAACTGCTCAATatgtggaaaaacttttaagacgGAAGAGGGCTTGAAAAACCACATTTCACGTCCTCATCGTCCTCATCGTTTACCTTGTGAGGTCTGTGGAAAAATGCTTAGAAACGATTCACTCAAGACACATATGAGTGCAGTCCATTTCGATATTAAACCTTATCAGTGTGATATTTGTGCAAAAAAGTTCTGTAAACGAGCTCTTATTGCTCACATGAACACACATAAGGAACACAGAACAAAAGATCATCACTGCAATCTTTGTGAAGCTTCTTTCTTCGATAATGGACAACTTCGTGTCCATATATTAAATGTACATGAAAGACCAAAGCATCTTACCTGCTCAATATGCAGAACAACTTTTAGAACCGAAGAGGGCttaaaaaagcataaattacGTCCTCATCGTTTTCCTTGTAAGGTCTGTGggaaaatgtataaaaaggATTTACTCAAAATACATCTAGATGCAGTGCATCTAAAAATTAAACCATATGAGtgtgatatttgtggaaaaaaaTGCAGTAAAACAACTATTACTGCTCACATGAATACGCATAAAAAACAcagaacaaaagattttcaatgcaCCATTTGTGAAAGTTCTTTCTTTGATAATGGGCATCTTCGACAACATATTTTAGGTAAACATATAAAACCAAAGCATCTCACCTGTTCATTATGCGGAAGAATTTGTTGGACAGTAGAAGGTTTGAAGAGGCATGAGCAACTTCCTCATCTATTTCCTTGTGAGGTCTGTGGAAAAATGCTTCGAAAGAATGGACTCAAGTCACATATGAATGCAATgcatttcaaaattaaaccATTTCAGtgtgatatttgtggaaagAAATGCGAAAAAACACATCTTGCTCATCATGTGAAAACGCATATTGATTTTgaacacagaaaaaaagacTTTCAATGCTATATTTGTGAAACTTCattcttcaataaaaatatactTCGACGACATATCATAAATGTTCATGAAAGTCGAAAGAATCTCAacaattcatcaaaaattgacTGTAAAACTTGTGGTAAAGTTTTTCAAGGCCCAAATGCATACTTCAATCATATGATTAATATTCACAAAATCACCCCATCCAAAGAACAACTTCAAACAACAGTTGCATGTGATGTATGTGGGAAACGTTTCTTCACtattcaaaatttgaaaatgcataaattttatcatgaagagaaaaattatatttgtgATTATCCTGGAtgtgagaagaaatttaaagcaaaaagaaatctttcaaagcATACTTTtatgaatcataaataa
- Protein Sequence
- MRIIRSVLEAQDLNVKVVLEDIFADFKNCHEKCRLCFVPVTKRYSRIKITDEIQNKINSVLQVHLSIDRTGSEFICSECGNNLNNVHLFKCKIKEKQNYFEKFSNKKVGDTDDDLPLPFQEHDIKTEYELNISTETELTTPIYEVKDEIFDPEHESPNDVNESRNVESSEFLKQKQSNPQFVRRDVTIKILRTDRPLQQHKYRKDSKARFCDICGKAFKNRAYIAAHMNTHKKYRTKDYHCHICENKHFDKKQLKIHTINAHGKSVSCDICGEALKNGLALKRHKLTIHSKKFPCEICGKGSRDSYSLALHMNTHKKNKPCINVNCSICGKTFKTEEGLKNHISRPHRPHRLPCEVCGKMLRNDSLKTHMSAVHFDIKPYQCDICAKKFCKRALIAHMNTHKEHRTKDHHCNLCEASFFDNGQLRVHILNVHERPKHLTCSICRTTFRTEEGLKKHKLRPHRFPCKVCGKMYKKDLLKIHLDAVHLKIKPYECDICGKKCSKTTITAHMNTHKKHRTKDFQCTICESSFFDNGHLRQHILGKHIKPKHLTCSLCGRICWTVEGLKRHEQLPHLFPCEVCGKMLRKNGLKSHMNAMHFKIKPFQCDICGKKCEKTHLAHHVKTHIDFEHRKKDFQCYICETSFFNKNILRRHIINVHESRKNLNNSSKIDCKTCGKVFQGPNAYFNHMINIHKITPSKEQLQTTVACDVCGKRFFTIQNLKMHKFYHEEKNYICDYPGCEKKFKAKRNLSKHTFMNHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -