Cmar004090.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- ZFY
- Assembly
- GCA_900005825.1
- Location
- CVRI01000041.1:826248-829226[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.0017 0.12 13.1 1.3 1 23 150 173 150 173 0.93 2 30 0.00066 0.049 14.3 3.8 1 20 195 214 195 216 0.96 3 30 0.11 8.5 7.3 1.9 2 20 225 243 224 245 0.92 4 30 2.1e-06 0.00016 22.2 2.1 1 23 249 271 249 271 0.98 5 30 0.017 1.3 9.9 5.1 1 23 279 302 279 302 0.97 6 30 0.24 18 6.3 2.8 1 20 307 326 307 328 0.93 7 30 1.2e-05 0.00087 19.9 1.0 1 23 332 354 332 354 0.98 8 30 0.013 0.97 10.3 3.9 1 23 362 385 362 385 0.93 9 30 0.095 7.1 7.5 4.0 1 19 390 408 390 411 0.94 10 30 0.0079 0.59 10.9 0.4 1 23 415 437 415 437 0.98 11 30 0.18 13 6.7 5.8 1 23 445 468 445 468 0.97 12 30 0.27 20 6.1 0.6 3 19 475 491 473 491 0.95 13 30 7.6e-07 5.7e-05 23.6 0.9 1 23 498 520 498 520 0.98 14 30 0.0036 0.27 12.0 3.8 1 23 528 551 528 551 0.96 15 30 0.13 9.6 7.1 3.2 1 21 556 576 556 577 0.94 16 30 5.3e-07 4e-05 24.1 1.4 1 23 581 603 581 603 0.98 17 30 0.0031 0.23 12.2 2.6 1 23 611 634 611 634 0.97 18 30 0.86 64 4.5 2.7 1 19 639 657 639 660 0.93 19 30 4e-06 0.00029 21.3 0.6 1 23 664 686 664 686 0.98 20 30 0.0027 0.2 12.4 1.9 1 23 694 717 694 717 0.93 21 30 0.02 1.5 9.7 4.0 1 21 722 742 722 743 0.94 22 30 0.0082 0.61 10.9 0.4 1 23 747 769 747 769 0.98 23 30 0.023 1.7 9.5 4.0 1 23 777 800 777 800 0.97 24 30 0.36 26 5.7 2.2 1 19 805 823 805 823 0.97 25 30 5.4e-05 0.004 17.8 1.0 1 23 830 852 830 852 0.98 26 30 0.016 1.2 10.0 5.3 1 23 860 883 860 883 0.93 27 30 0.066 4.9 8.1 2.2 1 21 888 908 888 909 0.93 28 30 2.4e-05 0.0018 18.9 0.8 1 23 912 934 912 934 0.97 29 30 0.0014 0.1 13.3 2.5 1 23 942 965 942 965 0.96 30 30 0.59 44 5.1 5.9 1 19 970 988 970 991 0.93
Sequence Information
- Coding Sequence
- atgaaaagtttgagaaaacGAGATTTGAATGTCAAAGTCGTccttgaagatattttctctGACTTCAAAAACATTCATCAGAAATGCCGTTTATGTTTCAAGGAAGTATACAATCAGGAGCCAAAAATATATCTTACAAATGATATGATAAGCAGGATGCATGATGTCTTTCAAGTTAACATGTCATTAGATGGAACAGGATCAGAATTTGTGTGCTCAAAatgtgaaaacaatttaaatattctttatcaGTTCAGGGTACAAATGAAGGGAAAACAAAAGTGTTATGAAAAGTTCAGAAGTATGAAAATTGACGACACTGATGAGAGACTTGCGAGCATACACGAGAATTCGAtcaaaattgaagttgaagaagcAACTTGTCAACTGgaagatgaaaatcaaattctcAAGTCCCAAGttattaataagaaaagtCAACAGCTTTTTCCTTGCGATGtttgtggaaagaaatttaaaaatgttgttggAGTCCAGCGGCATTGCAGGAGAGAACATTCAAACAGTCGATATGGAGCTGCTTTGCCTACGAATAAGCGTAAAGAACataaatcaaagaattttcaatgtcaaatttgtaaaaaaaatttctaccataagaaaaaattaaacagtCACATATATAACTGTCgtgaagatagaaaaaaaatttcatgcaCATCATGCAAAAGACCATTCCAGTCTGAACGAAACCTGAAAGTTCATTTTTGTTCTTATTCCAAATTTGTTTGCGATACATGTGGTAAAAGATTCAACAACCGACACAGTCTTACTGAACATATAGACACGCACAGAAAATATAGAACAAGAGACTATCATTGCGATATTTGTAAAACTTCTTACTATAACAAAGCTGGGTTTCGATTACATATATCAAGATgtcatgaagaaagaaagttttcatgtgTATCGTGTAGAAAGACATTCAAGTTGGAACGAACATTGAAATCTCATGTGTGCAATAATTCCACATTTGTCTGCGATATTTGTGGTAAAAGTTTCCATCGTCGAGGGGAAGTCTTCGATCACATGATCAAGCATAGGAAATATAAGACAAGAGACTATCAGTGtttcatttgtgaaaattcCTATCCTCgtaagaaatcattaaattcacATCTATTTCAatgtcatgaaattaaaaagtttttctgctatttatgcaaaaaagctttcaagtcaGAACGAAAGCTTAAATCTCATAATTGTGGTAAATACACATTTGTTTGTGACTTTTGTggtaaaagaattcaaaaaaaaattaacgttGCTTTGCATATGAATAGGCATAGAAAACATagatcaaaagattttcaatgtcaCATTTGTAAATCTTCTTACCTCCATAAGGTCACATTACAACAtcatataattaaaattcatgacgataaaaaaatttgctgCACATCATGTAAACAAGTTTTCATGTCAGAAGAAAGTCTTAAAGCTCATGATTGTTgttatttcaaatttgtttgcGATATTTGTGGTAAAAGATTCAACAACCGATACTGTCTTGCTGCTCACATAGAAACGCACAGAAAATATAGAACAAAAGATTATCATTGCGATATCTGTAAAACTTCTTTCTATAATCAAGCTGGGTTTCGATTACATAGATCAAAATAtcacgaagaaagaaaattttcatgtgtATCATgtagaaaaacattcaaattggAACGAAAATTGAAATCTCACATTTGTAGTATTCCCAAATTTGTTTGCGATATTTGTGGTAAAAGATTCAACAACCGACACAGTCTTACTGAACATATAGACACGCACAGAAAATATAGAACAAGAGACTATCATTGCGATATTTGTAAAACTTCTTACTATAACCAAGCTGGGTTTCGATTACATATATCAAGATatcatgaagaaagaaagttttcatgtgCATCGTGTAGAAAGATATTCATGTTcgaaaaaaacttgaaatctcATAATTGTAGTAATTCCACATTTGTCTGCGATATTTGTGGTAAAAGTTTCCATCGTCGAGGGGAAGTCATCAATCACATGATCAAGCATAGGAAATATAAGACAAGAGACTATCAGTGtttcatttgtgaaaattcCTATACTCGTAAGCAATCATTAAATCTACATCTATTTCaaagtcatgaaaataaaaagtttttctgctATTTTtgcaaaaaagctttcaagtcaGAACGAAAGCTTAAATCTCATATTTGTGGTAATTCCACATTTGTTTGTGACTTTTGTggtaaaagaattcaaaaaaaaattaacgttGCTTTGCATATGAATAAGCATAAAAAACATagatcaaaagattttcaatgtcaCATTTGTAAATCTTCTTACCTCCATAAAGTCACATTGCAACGtcatataattaaaattcatgacGATACAAAATTTTGCTGCACATCATGTAAGCAAGTTTTCATGTCAGAAGAAAGTCTAAAATCTCATGATTGTTgttatttcaaatttgtttgcGATATTTGTGGTAAAAGAAGCCACAACCGAAACAGTCTTGCTAGACATATAGACACGCACAGAAAATATAGAACAAAAGACTATCATTGCGATATTtgtaaaacttctttctttaataaatttgggTTACACAGACATGTATCAGAATTTcacgaagaaagaaagttttcatgtgCATCATGCCGAAAATCATTCACGTTGGAACGATCATTGAAATCTCATGTTTGCAGTACCACATTTGTTTGTGATGCTTGTGATAAAAGATTCTACAGTCGATCTAAACTTACTAACCATATAGATATGCACAGAAAATATAGAACAAGAGATTATCATTGCGATATTTGTAAAACTTCTTACTATAACAAAGCTGGGTTACAAACTCATGTGTCAAAATatcatgaagaaagaaagttttcatgtaCATCATGCCGAAAGACATTCAAATTGGAACATTACTTGAAATCTCATAATTGCAGTATCTAG
- Protein Sequence
- MKSLRKRDLNVKVVLEDIFSDFKNIHQKCRLCFKEVYNQEPKIYLTNDMISRMHDVFQVNMSLDGTGSEFVCSKCENNLNILYQFRVQMKGKQKCYEKFRSMKIDDTDERLASIHENSIKIEVEEATCQLEDENQILKSQVINKKSQQLFPCDVCGKKFKNVVGVQRHCRREHSNSRYGAALPTNKRKEHKSKNFQCQICKKNFYHKKKLNSHIYNCREDRKKISCTSCKRPFQSERNLKVHFCSYSKFVCDTCGKRFNNRHSLTEHIDTHRKYRTRDYHCDICKTSYYNKAGFRLHISRCHEERKFSCVSCRKTFKLERTLKSHVCNNSTFVCDICGKSFHRRGEVFDHMIKHRKYKTRDYQCFICENSYPRKKSLNSHLFQCHEIKKFFCYLCKKAFKSERKLKSHNCGKYTFVCDFCGKRIQKKINVALHMNRHRKHRSKDFQCHICKSSYLHKVTLQHHIIKIHDDKKICCTSCKQVFMSEESLKAHDCCYFKFVCDICGKRFNNRYCLAAHIETHRKYRTKDYHCDICKTSFYNQAGFRLHRSKYHEERKFSCVSCRKTFKLERKLKSHICSIPKFVCDICGKRFNNRHSLTEHIDTHRKYRTRDYHCDICKTSYYNQAGFRLHISRYHEERKFSCASCRKIFMFEKNLKSHNCSNSTFVCDICGKSFHRRGEVINHMIKHRKYKTRDYQCFICENSYTRKQSLNLHLFQSHENKKFFCYFCKKAFKSERKLKSHICGNSTFVCDFCGKRIQKKINVALHMNKHKKHRSKDFQCHICKSSYLHKVTLQRHIIKIHDDTKFCCTSCKQVFMSEESLKSHDCCYFKFVCDICGKRSHNRNSLARHIDTHRKYRTKDYHCDICKTSFFNKFGLHRHVSEFHEERKFSCASCRKSFTLERSLKSHVCSTTFVCDACDKRFYSRSKLTNHIDMHRKYRTRDYHCDICKTSYYNKAGLQTHVSKYHEERKFSCTSCRKTFKLEHYLKSHNCSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -