Basic Information

Insect: Clunio marinus
Gene Symbol: -
Assembly: GCA_900005825.1
Location: CVRI01000041.1:817883-820750[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.0047 0.35 11.6 1.0 1 23 137 160 137 160 0.92

2 29 8.2e-05 0.0061 17.2 1.0 1 23 182 205 182 205 0.98

3 29 0.046 3.4 8.5 3.6 1 23 210 233 210 233 0.95

4 29 1.3e-05 0.00095 19.7 3.9 1 23 235 257 235 257 0.98

5 29 0.00025 0.019 15.7 5.1 1 23 265 288 265 288 0.97

6 29 0.43 32 5.5 2.4 1 21 293 313 293 314 0.94

7 29 0.02 1.5 9.7 0.4 1 23 318 340 318 340 0.92

8 29 0.0023 0.17 12.6 7.0 1 23 348 371 348 371 0.97

9 29 1.3 94 4.0 1.8 1 21 376 396 376 397 0.91

10 29 4.8e-06 0.00036 21.1 2.5 1 23 403 425 403 425 0.97

11 29 0.00015 0.011 16.4 3.1 1 23 433 456 433 456 0.98

12 29 0.13 9.8 7.1 3.0 1 20 461 480 461 482 0.92

13 29 1e-06 7.8e-05 23.2 0.2 1 23 486 508 486 508 0.98

14 29 0.25 18 6.2 1.0 1 16 516 531 516 534 0.86

15 29 0.11 8 7.4 3.2 1 19 544 562 544 565 0.93

16 29 1.5e-05 0.0011 19.5 0.4 1 23 569 591 569 591 0.98

17 29 0.015 1.1 10.1 0.9 1 23 599 622 599 622 0.93

18 29 0.032 2.4 9.1 3.5 1 19 627 645 627 647 0.94

19 29 0.0062 0.46 11.3 0.3 1 23 652 674 652 674 0.98

20 29 2.1e-05 0.0016 19.1 2.6 1 23 682 705 682 705 0.96

21 29 0.041 3.1 8.7 1.4 1 20 710 729 710 731 0.93

22 29 0.00022 0.016 15.9 0.9 2 23 736 757 735 757 0.96

23 29 0.01 0.75 10.6 3.5 1 23 765 788 765 788 0.96

24 29 0.013 0.98 10.2 2.8 1 21 793 813 793 814 0.95

25 29 2.8e-05 0.002 18.7 1.4 1 23 818 840 818 840 0.97

26 29 0.0022 0.16 12.7 4.0 1 23 848 871 848 871 0.96

27 29 7.6 5.6e+02 1.6 1.8 1 19 876 894 876 897 0.78

28 29 0.0002 0.015 16.0 1.6 1 23 899 921 899 921 0.98

29 29 0.0025 0.18 12.5 6.2 1 23 929 952 929 952 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.0047	0.35	11.6	1.0	1	23	137	160	137	160	0.92
2	29	8.2e-05	0.0061	17.2	1.0	1	23	182	205	182	205	0.98
3	29	0.046	3.4	8.5	3.6	1	23	210	233	210	233	0.95
4	29	1.3e-05	0.00095	19.7	3.9	1	23	235	257	235	257	0.98
5	29	0.00025	0.019	15.7	5.1	1	23	265	288	265	288	0.97
6	29	0.43	32	5.5	2.4	1	21	293	313	293	314	0.94
7	29	0.02	1.5	9.7	0.4	1	23	318	340	318	340	0.92
8	29	0.0023	0.17	12.6	7.0	1	23	348	371	348	371	0.97
9	29	1.3	94	4.0	1.8	1	21	376	396	376	397	0.91
10	29	4.8e-06	0.00036	21.1	2.5	1	23	403	425	403	425	0.97
11	29	0.00015	0.011	16.4	3.1	1	23	433	456	433	456	0.98
12	29	0.13	9.8	7.1	3.0	1	20	461	480	461	482	0.92
13	29	1e-06	7.8e-05	23.2	0.2	1	23	486	508	486	508	0.98
14	29	0.25	18	6.2	1.0	1	16	516	531	516	534	0.86
15	29	0.11	8	7.4	3.2	1	19	544	562	544	565	0.93
16	29	1.5e-05	0.0011	19.5	0.4	1	23	569	591	569	591	0.98
17	29	0.015	1.1	10.1	0.9	1	23	599	622	599	622	0.93
18	29	0.032	2.4	9.1	3.5	1	19	627	645	627	647	0.94
19	29	0.0062	0.46	11.3	0.3	1	23	652	674	652	674	0.98
20	29	2.1e-05	0.0016	19.1	2.6	1	23	682	705	682	705	0.96
21	29	0.041	3.1	8.7	1.4	1	20	710	729	710	731	0.93
22	29	0.00022	0.016	15.9	0.9	2	23	736	757	735	757	0.96
23	29	0.01	0.75	10.6	3.5	1	23	765	788	765	788	0.96
24	29	0.013	0.98	10.2	2.8	1	21	793	813	793	814	0.95
25	29	2.8e-05	0.002	18.7	1.4	1	23	818	840	818	840	0.97
26	29	0.0022	0.16	12.7	4.0	1	23	848	871	848	871	0.96
27	29	7.6	5.6e+02	1.6	1.8	1	19	876	894	876	897	0.78
28	29	0.0002	0.015	16.0	1.6	1	23	899	921	899	921	0.98
29	29	0.0025	0.18	12.5	6.2	1	23	929	952	929	952	0.97

Sequence Information

Coding Sequence: ATGGAAAACTTGAGAAAACATGATTTGAATGTCAAAGTCGTccttgaagatattttctctGACTTCAAAAACATTCATCAGAAATGCCGTTTGTGTTTCAAGGAAGTATACCATCAAGAGCCAAAAATATATCTTACAAATGACATGATAAACAAGATTCATGCTGTCTTTCAAGTTAACATGTCAATAGATGGAAAAGGATCAGAATTCGTGTGCTCAAGATGTGAAAGCAATTCAAATAACTGTTTTGAAAGGTTCAGAAGTATGAAAAATGACAACAATGATGAGGAACTTGCGAGCATACACGAAAATTCgatcaaaattgaaattgaagaagcaaCTTGTGAAGTGGAAGATGGAAATCAAATTCTCAAGTCCCGAGATATTATTCAGAGAGgtcaacaattttttccttGTGATGTTTGTGGAAAGCAATTTAAGAATGTAATTGGAGTCCAGCGGCATTGCAGGAGAGTACATTCAAACAGTCGAAATGGAGTTGCTAAAGATTTGAACAAGCAAAGAGAACATAAATCAAAggattttcaatgtcaaattTGTAAATCTTCTTACGTCCTTAAATCCTCATTACAACGCCatataatgaaaattcatgaagataaaaaattctcCTGTACATCATGTAAGCAAGTTTACAAGTCAGAAAAAGGGCTAAAAGCTCATAGTTGTcggaatcataaatttatttgcgaTATTTGTAGCAAAATATTCCACCGTCGAGATCATCTTACTAAACATATAGAGACGCACAGAAAATACAGAACAAAAGATTATCATTGTCATATCTGTAAAACTTCCTTCTATAACAAAGGTGGGCTTCAAAGTCATATATCAAAATATCATaaaggaagaaagttttcatgtaCGTCATGCAGAAAATCATTTATGTTGGGACGATCATTGAAATCTCATATTTGTAGTGATCCCACATTTGCTTGCGATATTTGTGGTAAAAAATTCCACGGACGAAATATTCTTGCTGAACACTTAGACACGCACAGAATACATAGATCAAAAGATTATCAATGTCACATTtgtaaaacttctttctttaataaatttgggTTACATAGACATGTATCAAAATatcatgaagaaagaaagttttcatgtaCATCATGCAGAAAATCATTCCTGTTGGAACGATCATTGAAATCTCACATTTGTGGTAATCAAAATCCAATATTTGATTGTGATATTTGTGGTAAAATATTCCACCGTCGAGATCATCTTACTGGACATATGGAGACGCACAGAAAAGATAGACCAAGAGATTATAAATGTCACATTTGtaaatcttctttcttcaataaGGTCGCATTAAAACTtcatataaagaaaattcatgaagataaaaaatttttctgtTCAACATGTAAACAAGTTTACAAATCAGAAGAAGGTCTTAAAACTCATTTTTGTagcaatttgaaatttgtttgcGATATTTGTGGTAAAAGATTCAACGGCCGATATAATCTTTCTATACATATAGAGACTcacagaaaatataaaacaaaagattatCATTGCAATATCTGTGAAACTTCTTTCTATAATAAAATTAGGTTACGATTTCATTCATGGAAATTTCATgcagaaagaaagttttcatgtgCATCATGTCGAAGAACATTCAAATtcgaaagaaacttgaaatctCATAATTGTATTAAAACCACATTTGTTTGCGATATTTGTGGTAAAATATTCTACAATCGAGCGCATATCATTTTGCACATGATCAAGCATAGGAAATATCAAACAAGAGACTATCAGTGtttcatttgtgaaaattcCTACCCTCGTAAGCTATCATTAAATGAACATCtatttcaaaatcatcaaattaaaaagtttttctgcaatttatgcaaaaaaggtttcaaatcagaagaaaatatgaaatctcATAGTTGTGGTAACAAGAAATTCGTTTGTGACGTTTGCGGTAAAATAATTCGCAGTCGATGTGACATTGCTTTGCACATGATCAAGCATAGAAAACATAGATCAAAGGATTTTCAATGTCACATTTGTTCAAAATCTTACTTCAATAAGATCTCGTTGCAACGCCACATTTTGAACAttcatgaagataaaaattattcctgTACAACATGTAAACAAGTTTACATGTcagaagaaagtttaaaagctCACAGTTGTCggtataataaattaatttgcgATATTTGTGGTAAAAGATGCCACGACCGATCCGGTCTTGCTATTCACATAGACACGCACAGAAAATATAGAACAAAAGACTATCATTGCGATATTTGTAAAACTTCTTTCTATAACCTATCTGGGTTTCAAGGACATAGAACAAGATatcatgaagaaagaaagttttcatgccCATCATGtcgaaaaacattcaaattggAACAGAAATTGAAATCTCACATTTGTAGTATTTCCAATTTTGCATGTGATATTTGTGGTATGAGATTCAACAACCGATACTGCCTTGCTAAACATATAGACAGGCACAGAAAATATAGAACAAGAGACTATCATTGCGATATTTGTAAAACTTCTTTCTATAACAAAGCTGGGTTTCGAGTTCATAgatcaaaatttcatgaagaaagaaagttttcatgtgCATCATGCCGAAAATCATTCAAGTTGGAACGAATATTGAAATCTCATAATTGTAGCACATATTTCTGCGATTTTTGTGGTAAAATATTCTACCGTCGAACGTATATCATTGATCACATGATGAAACATAGGAAATATAGgacaagaaattttaaatgcaacAAGTGTGAAAAAAACTACTTCCATAGACGAGATATGAGAAAGCATATACGTCAAAGTCATGGAGAAAAATAA
Protein Sequence: MENLRKHDLNVKVVLEDIFSDFKNIHQKCRLCFKEVYHQEPKIYLTNDMINKIHAVFQVNMSIDGKGSEFVCSRCESNSNNCFERFRSMKNDNNDEELASIHENSIKIEIEEATCEVEDGNQILKSRDIIQRGQQFFPCDVCGKQFKNVIGVQRHCRRVHSNSRNGVAKDLNKQREHKSKDFQCQICKSSYVLKSSLQRHIMKIHEDKKFSCTSCKQVYKSEKGLKAHSCRNHKFICDICSKIFHRRDHLTKHIETHRKYRTKDYHCHICKTSFYNKGGLQSHISKYHKGRKFSCTSCRKSFMLGRSLKSHICSDPTFACDICGKKFHGRNILAEHLDTHRIHRSKDYQCHICKTSFFNKFGLHRHVSKYHEERKFSCTSCRKSFLLERSLKSHICGNQNPIFDCDICGKIFHRRDHLTGHMETHRKDRPRDYKCHICKSSFFNKVALKLHIKKIHEDKKFFCSTCKQVYKSEEGLKTHFCSNLKFVCDICGKRFNGRYNLSIHIETHRKYKTKDYHCNICETSFYNKIRLRFHSWKFHAERKFSCASCRRTFKFERNLKSHNCIKTTFVCDICGKIFYNRAHIILHMIKHRKYQTRDYQCFICENSYPRKLSLNEHLFQNHQIKKFFCNLCKKGFKSEENMKSHSCGNKKFVCDVCGKIIRSRCDIALHMIKHRKHRSKDFQCHICSKSYFNKISLQRHILNIHEDKNYSCTTCKQVYMSEESLKAHSCRYNKLICDICGKRCHDRSGLAIHIDTHRKYRTKDYHCDICKTSFYNLSGFQGHRTRYHEERKFSCPSCRKTFKLEQKLKSHICSISNFACDICGMRFNNRYCLAKHIDRHRKYRTRDYHCDICKTSFYNKAGFRVHRSKFHEERKFSCASCRKSFKLERILKSHNCSTYFCDFCGKIFYRRTYIIDHMMKHRKYRTRNFKCNKCEKNYFHRRDMRKHIRQSHGEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -