Cmar006132.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000040.1:856068-864810[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.0073 0.55 11.0 0.6 2 23 219 240 218 241 0.94 2 35 0.33 24 5.9 0.5 1 23 303 326 303 326 0.92 3 35 0.00018 0.014 16.1 0.8 1 23 333 356 333 356 0.93 4 35 0.019 1.4 9.8 0.3 1 23 369 392 369 392 0.92 5 35 6.7e-06 0.0005 20.6 1.1 2 23 399 421 398 421 0.96 6 35 0.0045 0.33 11.7 0.3 2 23 429 449 428 449 0.95 7 35 0.93 69 4.4 4.1 1 23 455 478 455 478 0.92 8 35 0.036 2.7 8.9 0.2 1 23 484 509 484 509 0.98 9 35 0.0073 0.55 11.0 0.6 2 23 757 778 756 779 0.94 10 35 0.33 24 5.9 0.5 1 23 841 864 841 864 0.92 11 35 0.00018 0.014 16.1 0.8 1 23 871 894 871 894 0.93 12 35 0.019 1.4 9.8 0.3 1 23 907 930 907 930 0.92 13 35 6.7e-06 0.0005 20.6 1.1 2 23 937 959 936 959 0.96 14 35 0.0045 0.33 11.7 0.3 2 23 967 987 966 987 0.95 15 35 0.93 69 4.4 4.1 1 23 993 1016 993 1016 0.92 16 35 0.036 2.7 8.9 0.2 1 23 1022 1047 1022 1047 0.98 17 35 1e-05 0.00075 20.1 1.2 2 23 1119 1141 1118 1141 0.96 18 35 2.2 1.6e+02 3.3 0.3 2 23 1149 1167 1148 1167 0.76 19 35 0.00095 0.071 13.8 2.6 1 23 1173 1196 1173 1196 0.96 20 35 0.0097 0.72 10.7 0.3 1 23 1202 1227 1202 1227 0.95 21 35 0.11 8.5 7.3 0.4 2 23 1317 1338 1316 1339 0.94 22 35 4.7e-05 0.0035 18.0 1.4 1 23 1431 1453 1431 1453 0.98 23 35 0.0014 0.1 13.4 1.0 1 23 1462 1484 1462 1484 0.98 24 35 0.011 0.8 10.5 0.3 2 23 1491 1513 1490 1513 0.96 25 35 0.024 1.8 9.4 0.6 2 23 1520 1540 1520 1540 0.95 26 35 0.00078 0.058 14.1 2.5 1 23 1546 1569 1546 1569 0.96 27 35 0.0026 0.19 12.5 0.4 1 23 1575 1600 1575 1600 0.98 28 35 0.11 8 7.4 0.2 2 23 1849 1870 1848 1871 0.94 29 35 4.1 3.1e+02 2.4 7.3 1 23 1933 1956 1933 1956 0.96 30 35 5.9e-05 0.0044 17.6 3.0 1 23 1963 1985 1963 1985 0.97 31 35 9.4 7e+02 1.3 5.0 1 23 1994 2016 1994 2017 0.93 32 35 9.6e-05 0.0072 17.0 0.2 3 23 2024 2045 2022 2045 0.96 33 35 0.064 4.7 8.1 0.7 2 23 2054 2074 2053 2074 0.96 34 35 0.00081 0.06 14.1 2.6 1 23 2080 2103 2080 2103 0.96 35 35 0.02 1.5 9.7 0.1 1 23 2109 2134 2109 2134 0.98
Sequence Information
- Coding Sequence
- atgagtgaCGTCTGTCGTTTATGTGGTGACTTGAAGTCTTACCATGAGcttcaagatatttatgatAGTGAATCAGACATAATAATGAAACTCGAAAATACtttgaaagttaaatttgaattcaacaAAATGCTTCCGAATTCTGTTTGTTGCGAATGTGTGAACAATTTGGAAAGGTGCAGCCAATTTGCAGAATTGATCTCATCTGTACAAGTCAAGCTTAAACTCGATCTTCAAGAACAATTACAAATGATTGTTCCAAATGATGAATTGCTGAATTATTCTCATGacattgaatttaaaagtttagaaattaaaatagaaaagctTGATCCTGATATCCTTGAACAGCTTACTGCTAGAAGACGAAGTAcgagaataagaaaatctgTTGTTCCATTAGATAATTCGAAGAATACTCAAAAAATTAGATCGAAGAAGAATCCTAAAATAAAACGAACATTTTTCAGAAAACCATTGAAGAATGcggaaaaatttcaaatgcacAATCTCTTTAAAAATGAACTAGAAGGTCGTTTTGTAGTTCAACCGCAAGATATGGACATTGGCGATCACCAACCGAGTGAAGGCGGAGTTTTACCAGATGCATTGCTGGAAAAGTTCAAGGGAATTAGttggaaaaattatgaatggaAATGTGAAGAATGTCAGGAATCTTTTGAGAATGGAATTGATCTCGAAAAGCACAGTTTAAAGCATCACAAGAAGCGAGTTATTAGAGATTGTTGTGCAATAACGTATCTCACCCACGCCAGATATATTTGCCACATAAATGAGAAACATCAGCCTGAACTCAAATATTGCTGTTTGATTTGTTCAGAATATCGAAcaagttttcttcatctctACCAACATATGAAATCTTCACATccaaattacaaattttattattgtttatatTGTGGAGAATATTTGAACAGCGGAACTATGCTTTTCAGGCACATTGATGACAAACATTTGCCGCTTCCCCTTTCATATCACTGCGATATATGTGGAGAAAGCTTTTCTACTAAGGATAAGATTTGGAAACATGTCATATTATTTCATATGAGACGTCGAGAattcttgaataaaaagaaatcattcatGTGTGAAATTTgtgctttaaatttcaaaactatAACTACGTTAAAAAATCATCAGGATGCTTTACATGGCGATAAACCTAATATAGTTTGTCCGCATTGTGGAAAAGAATTCAAActacaaaagaaattgagaatcCACATTAGAAGGATCCATGATTTTCAAGAGTCGCTAGTTACTTGTGAGATTTGTGGAAAATCTGTAAAATCTTTCTATTATAAAGCCCACATGAGGGCTCATACCGATGAAAAGCCGTTCAAATGCAAATTTTGTCCACgtgaattcaaatatttcagtgGATGCAGATATCATGTGCGAGCTGCGCATACAGGCGAACGTCCTTATCGTTGTCCAGTGGAAGGCTGTAATCAAGTCTTTATAGATTTTCCCAACTCTAGTAAACATATTAAAACTTCTCACGGTTTGAAGGATGTCAAACCTATTCGCATTAaaacatcagttaaattaatttatttgccaTCTCACAAgcatttaataaagaaaataagtaTGAGTGTGTGTCGTTTATGTGGTGACTTGAAGTCTTACCATGAGcttcaagatatttatgatAGTGAATCAGACATAATAATGAAACTCGAAAATACTTTGAAAGTTGAATTGGAATTCAACAAAATGCTTCCAAATTCTGTTTGTTGGGAATGTGTGAACAATTTGGAAAGGTGCAGCCAATTTTCCGAATTGATCTCATCTGTACAAGTCAAGCTTAAACTCGATCTTCAAGAACAATTACAAATGATTGTTCCAAATGATGAATTGCTGAATTATTCTCATGacattgaatttaaaagtttagaaattaaaatagaaaagctTGATCCTGATATCCTTGAACAGCTTACTGCTAGAAGACGAAGTAcgagaataagaaaatctgTTGTTCCATTAGATAATTCGAAGAATACTCAAAAAATAAGATCGAAGAAGAATCCTAAAATAAAACGAACATTTTTCAGAAAACCATTGAAGAATGcggaaaaatttcaaatgcacAATCTCTTTAAAAATGAACTAGAAGGTCGTTTTGTTGTTCAACCGCAAGATATGGACATTGGCGATCACCAACCGAGTGAAGGCGGAGTTTTACCAGATGCATTGCTGGAAAAGTTCAAGGGAATTAGttggaaaaattatgaatggaAATGTGAAGAATGTCAGGAATCTTTTGAGAATGGAATTGATCTCGAAAAGCACAGTTTAAAGCATCACAAGAAGCGAGTTATTAGAGATTGTTGTGCAATAACGTATCTCACCCACGCCAGATATATTTACCACATAAATGAGAAACATCAGCCTGAACTCAAATATTGCTGTTTGATTTGTTCAGAATATCGAAcaagttttcttcatctctACCAACATATGAAATCTTCACATccaaattacaaattttattattgtttatatTGTGGAGAATATTTGAACAGCGGAACTATGCTTTTCAGGCACATTGATGACAAACATTTGCCGCTTCCCCTTTCATATCACTGCGATATATGTGGAGAAAGCTTTTCTACTAAGGATAAGATTTGGAAACATGTCATATTATTTCATATGAGACGTCGAGAattcttgaataaaaagaaatcattcatGTGTGAAATTTgtgctttaaatttcaaaactatAACTACGTTAAAAAATCATCAGGATGCTTTACATGGCGATAAACCTAATATAGTTTGTCCGCATTGTGGAAAAGAATTCAAActacaaaagaaattgagaatcCACATTAGAAGGATCCATGATTTTCAAGAGTCGCTAGTTACTTGTGAGATTTGTGGAAAATCTGTAAAATCTTTCTATTATAAAGCCCACATGAGGGCTCATACCGATGAAAAGCCGTTCAAATGCAAATTTTGTCCACgtgaattcaaatatttcagtgGATGCAGATATCATGTGCGAGCTGCGCATACAGGCGAACGTCCTTATCGTTGTCCAGTGGAAGGCTGTAATCAAGTCTTTATAGATTTTCCCAACTCTAGTAAACATATTAAAACTTCTCACGGTTTGAAGGATGTCAAACCTATTCGCATTAaaaagctTGATCCTGATATCCTTGAACAGCTTACTGCTAGAAGACGAAGTAcgagaataagaaaatctgTTGTTCCATTAGATAATTCGAAGAATACTCAAAAAATTAgatcgaagaagaaaactcGAATAATTAAGTCGAAGAAGAACGTTCTCATTCTGAACGGTGATAAACCATATAAAGTTTGTCCGCATTGTGGAAAAGCATTCAAACTTCAGGCACAATTAAGAATCCACAAAAGAAGGATCCATGGTTTTCAAAAAACGTCAGTTACTTGCGAGATTTGTGGAAATTCTGTGAGAAATTATAAAACGCATATGATGATTCATACCGGTGAAAATCCATTCAAATGCAAGTTTTGTCCACGTGAATTCAAACACTCTTCTGGATATGAATATCACGTGCGAGCTGAGCATACAGGCGAACGTCCTTATCGTTGTCCGGTGAAAGGCTGTAATCGAGTATTCATAGACTCTCGCAACTCTAGTAAACATATTAAAGCATCTCACGGTTTGAAGGATGTCAAACCTATTCGCATTGaGAATCCGAAAAAGAAGTATAAAAGTCACAAAGAAATACCAATAACCTTTGAAATACCATTGAAGGTATCGGAAAAATTCCAAACATACATTCTCTTTAAAAATGAACTAGAAGGTCGTTTTGTTGTTCAACCGCAAGATATGGACATTGGCGATCACCAAGCGAATGAAGAAGGAGTTTTACCTGATGTAATGTTGGAAAAGTTGAAGGGAATTACCTGGCAAAATTATGAATGGAAATGTGAAgaatgtgaagaaaactttgagaACGTGGTGGATGTCGAAAAGCACAGTTTAAAGCATCACAAGAAGCGAGTCGTTAGAGATTGTTGTTTAGAAACATATAAGACCTACCccaaatatattttccacATAACTGAGAAACATCAGCCTGAACTCAAATATTGCTGTTTGATTTGTTCAGAATATCGAAcaagttttcttcatctctACCAACATATGAAATCTTCACATcctaatcataatttttacttttgtttatACTGTGGACAATATTTCGTCGGCGGCACAATTCTTTACAATCATATTCATACAAAACACATTTTGCTGCCACTCTCGTATCAATGCGATCTATGtggcaaacatttttctgtaaAAAATCAGCTTTGGGGACACATGACTAACCATGTAACCAGTAAAAATCCAAAATCATTCATGTGTGAAATTTGTGCCTTAAGTTTCCGAAGTATTTTTACTTTACAAAGTCATCAAAAAAGGCACCTGGAGCAATCTGAACAATCTTGTCCTTACTGTGGAAAGttatttggCAATAGATTTCTCGCACTAAGTCACATCAAAAGAGTACACGGAACTAGAATAAAAGAAACCTGTGAAATATGTGGAAAAGTTCTCTCAAATAATCGTTTTAAACGTCACATGGatGTTCATACCGGTGAAAATCCattcaaatgcaaattttGTCCACGTGAATTCAGACACTCTTCCGGATTCATTTATCATGTGCGAGCTGAGCATACAGGCGAACGTCCTTATCGTTGTCCAGTGGAAGGCTGTAATCAAGTATTTATAGACTATTCCAACTCTAGTAAacatattaaaacatttcacgGTTTGAAGGATGTCAAGCCTATTCGCATTGaaacatcagtaaaattaatttatttgccaTCTCACAAGctttcaataaagaaaataagtaTGAGTGTGTGTCGTTTATGTGGAGGCTTGAAGTCTTATGATGAGcttcaagatatttatgatAGTGAATCAGACATAATTATAAAACTCGAAAATACTTTGAAAGTTGAATTGGAATTCAACAAAATGCTTCCGAATTCTGTTTGTTGGGAATGTGTGAATAATTTGGAAAGGTGCATCCAATTTGCAGAATTGATCTCATCTGTACAAATCAAGCTTAAGCTCGATCTTCAAGAACAATTACAAATGATTGTTTCAAATGATGAATTGCTGAATTATTCTCATGacattgaatttaaaagtttagaaattaaaatagaaaaacttgATCCTGATATCTTTGAACAGCTTCATGGTGGAAGACAAAgtacgaaaacaaaaaaatctgttGTTTCATCCGATAATTCGAACAATACTCAAAAAATTAAGACGAAGAAGAATCCTAAAAAGAAGCAAGAAAGTTGCAAAGAAAAACCATTGAAGAATtctgaaaaatatcaaatgcaCATTGTCTTTAAAAATGAGCTAGAAGGTCGTTTTGTTGTTCAACCGCAAGATATGGACATTGGCGGTTACCAACCGAATGAAGATGGAGTTTTACCTGATGCAATGCTGGAAAAGTTGAAGGGAATTACctggaaaaattatgaatggaaatgtgaagaatgtgaagaaaactttgagaACGTGGTGGATGTCGAAAAGCACGGTTTAAAGCATCACAAAATGCGAGTCGTTAGAGATTGTTGTTTAAAAACATATAAGAACTACCCTAAATACGTTTTCCACATAATTGAGAAACATCAACCTGAACTCAAATATTGCTGTTTGATTTGTTCAGAATATCGAAcaagttttcttcatctctACCAACATATGAAATCTTCACATCCTaatcataacttttatttctgtttataTTGCGGACATTTTTTCTGTCGTGGAACTACGCTTGACGATCATGTTCACACAAAACACATTGTTCTGCCACTTTCGTATCAATGCGATCTAtgtggaaaacatttttctgtaaAAAATCTGCTTACTTCGCACATGTTCTACCACTTCTACCGTAACAATCCCAAATCGTACTTGTGTGAAATTTGTGCCTTGAATTTCAAAAGTGTAAATAGTTTACACTGTCATCAAAGAGTGCATCATAAGCCATCTGAAATAGCTTGTCCTAACTGTGGAAAGTTATTCAGCAATAGAGTAAGTGTTAAAACTCATATCAGAAGAGTGCACGGGAATagaaagaagataaaagtAACCTGTGAAATATGTGGaaaaactttgatgaaaaatcGTTTTAAACGTCACATGgatgTTCATACCGGTGAAAATCCattcaaatgcaaattttGTCCACGTGAATTCAAACACTCTTCCGGATTCATTTATCATGTGCGAGCTGAGCATACAGGCGAACGTCCTTATCGTTGTCCAGTGGAAGGCTGTAATCAAGTATTCATAGACTATCCCAATTCTAGTAAACATATTAAAACATCTCACGGTTTGAACGATGTCAAACCTatatatgaaaaaagtttaatgttgaATGATTAA
- Protein Sequence
- MSDVCRLCGDLKSYHELQDIYDSESDIIMKLENTLKVKFEFNKMLPNSVCCECVNNLERCSQFAELISSVQVKLKLDLQEQLQMIVPNDELLNYSHDIEFKSLEIKIEKLDPDILEQLTARRRSTRIRKSVVPLDNSKNTQKIRSKKNPKIKRTFFRKPLKNAEKFQMHNLFKNELEGRFVVQPQDMDIGDHQPSEGGVLPDALLEKFKGISWKNYEWKCEECQESFENGIDLEKHSLKHHKKRVIRDCCAITYLTHARYICHINEKHQPELKYCCLICSEYRTSFLHLYQHMKSSHPNYKFYYCLYCGEYLNSGTMLFRHIDDKHLPLPLSYHCDICGESFSTKDKIWKHVILFHMRRREFLNKKKSFMCEICALNFKTITTLKNHQDALHGDKPNIVCPHCGKEFKLQKKLRIHIRRIHDFQESLVTCEICGKSVKSFYYKAHMRAHTDEKPFKCKFCPREFKYFSGCRYHVRAAHTGERPYRCPVEGCNQVFIDFPNSSKHIKTSHGLKDVKPIRIKTSVKLIYLPSHKHLIKKISMSVCRLCGDLKSYHELQDIYDSESDIIMKLENTLKVELEFNKMLPNSVCWECVNNLERCSQFSELISSVQVKLKLDLQEQLQMIVPNDELLNYSHDIEFKSLEIKIEKLDPDILEQLTARRRSTRIRKSVVPLDNSKNTQKIRSKKNPKIKRTFFRKPLKNAEKFQMHNLFKNELEGRFVVQPQDMDIGDHQPSEGGVLPDALLEKFKGISWKNYEWKCEECQESFENGIDLEKHSLKHHKKRVIRDCCAITYLTHARYIYHINEKHQPELKYCCLICSEYRTSFLHLYQHMKSSHPNYKFYYCLYCGEYLNSGTMLFRHIDDKHLPLPLSYHCDICGESFSTKDKIWKHVILFHMRRREFLNKKKSFMCEICALNFKTITTLKNHQDALHGDKPNIVCPHCGKEFKLQKKLRIHIRRIHDFQESLVTCEICGKSVKSFYYKAHMRAHTDEKPFKCKFCPREFKYFSGCRYHVRAAHTGERPYRCPVEGCNQVFIDFPNSSKHIKTSHGLKDVKPIRIKKLDPDILEQLTARRRSTRIRKSVVPLDNSKNTQKIRSKKKTRIIKSKKNVLILNGDKPYKVCPHCGKAFKLQAQLRIHKRRIHGFQKTSVTCEICGNSVRNYKTHMMIHTGENPFKCKFCPREFKHSSGYEYHVRAEHTGERPYRCPVKGCNRVFIDSRNSSKHIKASHGLKDVKPIRIENPKKKYKSHKEIPITFEIPLKVSEKFQTYILFKNELEGRFVVQPQDMDIGDHQANEEGVLPDVMLEKLKGITWQNYEWKCEECEENFENVVDVEKHSLKHHKKRVVRDCCLETYKTYPKYIFHITEKHQPELKYCCLICSEYRTSFLHLYQHMKSSHPNHNFYFCLYCGQYFVGGTILYNHIHTKHILLPLSYQCDLCGKHFSVKNQLWGHMTNHVTSKNPKSFMCEICALSFRSIFTLQSHQKRHLEQSEQSCPYCGKLFGNRFLALSHIKRVHGTRIKETCEICGKVLSNNRFKRHMDVHTGENPFKCKFCPREFRHSSGFIYHVRAEHTGERPYRCPVEGCNQVFIDYSNSSKHIKTFHGLKDVKPIRIETSVKLIYLPSHKLSIKKISMSVCRLCGGLKSYDELQDIYDSESDIIIKLENTLKVELEFNKMLPNSVCWECVNNLERCIQFAELISSVQIKLKLDLQEQLQMIVSNDELLNYSHDIEFKSLEIKIEKLDPDIFEQLHGGRQSTKTKKSVVSSDNSNNTQKIKTKKNPKKKQESCKEKPLKNSEKYQMHIVFKNELEGRFVVQPQDMDIGGYQPNEDGVLPDAMLEKLKGITWKNYEWKCEECEENFENVVDVEKHGLKHHKMRVVRDCCLKTYKNYPKYVFHIIEKHQPELKYCCLICSEYRTSFLHLYQHMKSSHPNHNFYFCLYCGHFFCRGTTLDDHVHTKHIVLPLSYQCDLCGKHFSVKNLLTSHMFYHFYRNNPKSYLCEICALNFKSVNSLHCHQRVHHKPSEIACPNCGKLFSNRVSVKTHIRRVHGNRKKIKVTCEICGKTLMKNRFKRHMDVHTGENPFKCKFCPREFKHSSGFIYHVRAEHTGERPYRCPVEGCNQVFIDYPNSSKHIKTSHGLNDVKPIYEKSLMLND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -